GeneSeqer. Version of October 20, 2003. Date run: Mon Nov 10 17:48:30 2003 (Bayesian) Splice site model (species): Zea mays Fast search parameters: MinMatchLen 12, MinQualityHSP 12, MinQualityCHAIN 30. ________________________________________________________________________________ Sequence 1: 1006005A10YNX, from 1 to 312, both strands analyzed. ... started at: Mon Nov 10 17:48:30 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 5268575-) 1 GTTTTGTAGG ATGTCCAAAC AGATGCTTCC ATCCGCATAA ATGTTTGGGT GAAACATCCT 61 CGAAACAAAC CGAACAGTCG GAGGTTTGTT GGGGTAATCT TCTGTAAATT GCAGAGTCAG 121 CTTGAACGTG CCTCCGTCCC ACGGCGTGTC ATCCGGCCCG AATATGACGG CGTTCCAGAG 181 CATGATGTTG TTGTCGTGCG GCGCGCCGCT GATGCCGGCG GGCGGGTCCT GCTGCAACCG 241 CTTGAAGTCC CGCATCAGGC GCTTCCTCGC CGGCGTCGAC ATCTCCGCCT CCCAGTCCCA 301 GACCCTAGCT CAGTCCCCGA TCTCTGGTCC TGCAGGCCGC AGGCCGCAGG CCGCAGCACG 361 CACGCCTCCG CTCCCTGGTT CTCCCGTCTC CCTCCCTCCC TCCTGACCTG GTACGAGACG 421 CGAGAGGAGA AGCTTCGGAG CGAGAAACGG GCAGGTGGAT GTGGGGGAGG ACGGAGCCGA 481 GCGCCCGAGC CTGGTCCCCG GGTGCGAAAA CGACGCGGCG CGAGCGGCGT GACGTGACGT 541 GCCCCCTTCA CCCGAGCGGC CGTGATCGCG TTACCTCCTA GCGCGCGTCG CCTCCTGAGT 601 CTGATGTCGT GCCGAATTCT TTGGAT Predicted gene structure (within gDNA segment 1 to 312): Exon 1 135 312 ( 178 n); cDNA 354 527 ( 174 n); score: 0.978 MATCH 1006005A10YNX+ 5268575- 0.978 178 0.571 G PGS_1006005A10YNX+_5268575- (135 312) Alignment (genomic DNA sequence = upper lines): CAGCACGCAC GCCTCCGCTC CCTGGTTCTC CCGTCTCCCT CCCTCCCTCC CTCCTGACCT 194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||| CAGCACGCAC GCCTCCGCTC CCTGGTTCTC CCGTCTCCCT CCCTCCCT-- --CCTGACCT 409 GGTACGAGAC GCGAGAGGAG AAGCTTCGGA GCGAGAAACG GGCAGGTGGA TGTGGGGGAG 254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTACGAGAC GCGAGAGGAG AAGCTTCGGA GCGAGAAACG GGCAGGTGGA TGTGGGGGAG 469 GACGGAGCCG AGCGCCCGAG CCTGGTCCCC GGGTGCGAAA ACGACGCGGC GCGAGCGG 312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACGGAGCCG AGCGCCCGAG CCTGGTCCCC GGGTGCGAAA ACGACGCGGC GCGAGCGG 527 hqPGS_1006005A10YNX+_5268575- (135 312) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 312: PGL 1 (+ strand): 135 312 AGS-1 (135 312) SCR (e 0.978) Exon 1 135 312 ( 178 n); score: 0.978 PGS (135 312) 5268575- 3-phase translation of AGS-1 (+strand): . . . . . . 135 CAGCACGCACGCCTCCGCTCCCTGGTTCTCCCGTCTCCCTCCCTCCCTCCCTCCTGACCT Q H A R L R S L V L P S P S L P P S - P S T H A S A P W F S R L P P S L P P D L A R T P P L P G S P V S L P P S L L T . . . . . . 195 GGTACGAGACGCGAGAGGAGAAGCTTCGGAGCGAGAAACGGGCAGGTGGATGTGGGGGAG G T R R E R R S F G A R N G Q V D V G E V R D A R G E A S E R E T G R W M W G R W Y E T R E E K L R S E K R A G G C G G . . . . . . 255 GACGGAGCCGAGCGCCCGAGCCTGGTCCCCGGGTGCGAAAACGACGCGGCGCGAGCGG D G A E R P S L V P G C E N D A A R A T E P S A R A W S P G A K T T R R E R G R S R A P E P G P R V R K R R G A S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 312 CCGCTCGCGCCGCGTCGTTTTCGCACCCGGGGACCAGGCTCGGGCGCTCGGCTCCGTCCT P L A P R R F R T R G P G S G A R L R P R S R R V V F A P G D Q A R A L G S V L A R A A S F S H P G T R L G R S A P S . . . . . . 252 CCCCCACATCCACCTGCCCGTTTCTCGCTCCGAAGCTTCTCCTCTCGCGTCTCGTACCAG P P H P P A R F S L R S F S S R V S Y Q P H I H L P V S R S E A S P L A S R T R S P T S T C P F L A P K L L L S R L V P . . . . . . 192 GTCAGGAGGGAGGGAGGGAGGGAGACGGGAGAACCAGGGAGCGGAGGCGTGCGTGCTG V R R E G G R E T G E P G S G G V R A S G G R E G G R R E N Q G A E A C V L G Q E G G R E G D G R T R E R R R A C Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:31 2003 ________________________________________________________________________________ Sequence 2: 1006027G11YNX, from 1 to 830, both strands analyzed. ... started at: Mon Nov 10 17:48:31 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:31 2003 ________________________________________________________________________________ Sequence 3: 1006028E01YNX, from 1 to 1061, both strands analyzed. ... started at: Mon Nov 10 17:48:31 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:31 2003 ________________________________________________________________________________ Sequence 4: 1006039C05YNX, from 1 to 760, both strands analyzed. ... started at: Mon Nov 10 17:48:31 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 14701006-) 1 GGCGGCTCCT ATTGCTGCAC GTGGAGGCAG CGGCGGGTTC GCTCGGAGGA TGAGCGCGCC 61 GGCGGGCCAG GAGGACAGTA ACGGCAGCAG CTCCGAACCC GAGAGGGACA TCAGGACGCG 121 CGTCGTTAAC CTGGTCAAGA AGTTCGACAA GATCGACGCC GACAAGGTGA CCGAGACTGC 181 AGACTTCCAA AAGGACCTGA GCTTGGACAG CTTAGACCGG GTGGAACTTG TTATGGCCTT 241 TGAACAAGAG TTCTCCGTTG AGATCCCTGA TGACAAGGCT GACAAGCTGA CCTGTTGTGC 301 GGATGTTGCC AAGTACATCA TATCTGAATC TCAAACGAGT GATACAAAAA ACCGGTGGAT 361 CCTGAGGGAC AGATGGAACC GAGTGCAATG TTTGCTTTTG TGTGTGTGTG TTTATCATAA 421 TGAGTCTGGG TTACAAAGGC GATCTGTGCG CATGATTTCC TTTTAGTTTT TCCAGTATGG 481 AA Predicted gene structure (within gDNA segment 1 to 760): Exon 1 62 157 ( 96 n); cDNA 1 96 ( 96 n); score: 0.969 MATCH 1006039C05YNX+ 14701006- 0.969 96 0.199 C PGS_1006039C05YNX+_14701006- (62 157) Alignment (genomic DNA sequence = upper lines): GGCGGCTCCT ATTGCTGCAC GTGGAGGCGG CGGCGGGTTC GCTCGGAGAA TGAGCGCGCC 121 |||||||||| |||||||||| |||||||| | |||||||||| |||||||| | |||||||||| GGCGGCTCCT ATTGCTGCAC GTGGAGGCAG CGGCGGGTTC GCTCGGAGGA TGAGCGCGCC 60 GGCGGGCCAG GAGGACAGTA GCGGCAGCAG CTCCGA 157 |||||||||| |||||||||| ||||||||| |||||| GGCGGGCCAG GAGGACAGTA ACGGCAGCAG CTCCGA 96 hqPGS_1006039C05YNX+_14701006- (62 157) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 760: PGL 1 (+ strand): 62 157 AGS-1 (62 157) SCR (e 0.969) Exon 1 62 157 ( 96 n); score: 0.969 PGS (62 157) 14701006- 3-phase translation of AGS-1 (+strand): . . . . . . 62 GGCGGCTCCTATTGCTGCACGTGGAGGCGGCGGCGGGTTCGCTCGGAGAATGAGCGCGCC G G S Y C C T W R R R R V R S E N E R A A A P I A A R G G G G G F A R R M S A P R L L L L H V E A A A G S L G E - A R . . . . 122 GGCGGGCCAGGAGGACAGTAGCGGCAGCAGCTCCGA G G P G G Q - R Q Q L R A G Q E D S S G S S S R R A R R T V A A A A P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 157 TCGGAGCTGCTGCCGCTACTGTCCTCCTGGCCCGCCGGCGCGCTCATTCTCCGAGCGAAC S E L L P L L S S W P A G A L I L R A N R S C C R Y C P P G P P A R S F S E R T G A A A A T V L L A R R R A H S P S E . . . . 97 CCGCCGCCGCCTCCACGTGCAGCAATAGGAGCCGCC P P P P P R A A I G A A R R R L H V Q Q - E P P A A A S T C S N R S R Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:32 2003 ________________________________________________________________________________ Sequence 5: 1006078B06YNX, from 1 to 476, both strands analyzed. ... started at: Mon Nov 10 17:48:32 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 ******************************************************************************** EST sequence 1 -strand (File: 5757399-) 1 TCAGCATCAA GCTGCTGCCT CTTAGCCAAG CCCAAGGCCG CCAAGCCCAA GGCACCCAAG 61 GCCGCGCCCG AGCCCAAGCC CTCGCCGAAG GCGAAGGCCA AGACCGCTGC GAAGCCCAAG 121 GCGGCGTCGC CCAAACCCAA GGCCAAGGCC AAGGCCAAGC CTGTCGCTCC TGCCGCCGCG 181 TCGCCCAAGC CCCGCGGGCG CCCTCCCAAG GTCGCCAAGA CCTCCGCCAA GGCCTCCCCC 241 GCCAAGGCAG CCAAGAAGCC GGCTGCTCCT GCCAAGAAGG GAAAGGCAGC GGCGGCTCCT 301 AAGAAGGTGG CAACCCCGAA GAAGGCTGCT GCTGCTGCCG CCCCGGCCAG GAAGGGCGTG 361 GCCAGGAAGG CCAAGAAGTA GTCTGCCTGC CTTGTCGCTG GCGAGATCCC CCCCTCAATT 421 CCG Predicted gene structure (within gDNA segment 476 to 1): Exon 1 476 205 ( 272 n); cDNA 7 276 ( 270 n); score: 0.960 Intron 1 204 134 ( 71 n); Pd: 0.000 (s: 0.98), Pa: 0.902 (s: 1.00) Exon 2 133 1 ( 133 n); cDNA 277 408 ( 132 n); score: 0.992 MATCH 1006078B06YNX- 5757399- 0.970 405 0.957 C PGS_1006078B06YNX-_5757399- (476 205,133 1) Alignment (genomic DNA sequence = upper lines): TCAAGCTGCG GGCCACCGAC GCCAAGCCCA AGGCCGCCAA GCCCAAGGCA CCCAAGGCGG 417 ||||||||| ||| | | |||||||||| |||||||||| |||||||||| |||||||| | TCAAGCTGC- TGCCTCTTA- GCCAAGCCCA AGGCCGCCAA GCCCAAGGCA CCCAAGGCCG 64 CGCCCAAGCC CAAGCCCTCG CCGAAGGCGA AGGCCAAGCC CGCTGCGAAG CCCAAGGCGG 357 ||||| |||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| CGCCCGAGCC CAAGCCCTCG CCGAAGGCGA AGGCCAAGAC CGCTGCGAAG CCCAAGGCGG 124 CGTCGCCCAA ACCCAAGGCC AAGGCCAAGG CCAAGCGTGT CGCTCCTGCC GCCGCGTCGC 297 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| CGTCGCCCAA ACCCAAGGCC AAGGCCAAGG CCAAGCCTGT CGCTCCTGCC GCCGCGTCGC 184 CCAAGCCCCG CGGGCGCCCT CCCAAGGTCG CCAAGACCTC CGCCAAGGCC TCCCCCGCCA 237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAGCCCCG CGGGCGCCCT CCCAAGGTCG CCAAGACCTC CGCCAAGGCC TCCCCCGCCA 244 AGGCAGCCAA GAAGGCGGCT GCTCCTGCCA AGAAGNNNNN NNNNNNNNNN NNNNNNNNNN 177 |||||||||| |||| ||||| |||||||||| || AGGCAGCCAA GAAGCCGGCT GCTCCTGCCA AG........ .......... .......... 276 NNNNNNNNNN NNNNNNNNNN NNNNNGCAAT CTATCTCGCC AAGAAGGGAA AGGCAGCGGC 117 ||||||| |||||||||| .......... .......... .......... .......... ...AAGGGAA AGGCAGCGGC 293 GGCTCCTAAG AAGGTGGCAA CCCCGAAGAA GGCTGCTGCT GCTGCCGCCC CGGCCAGGAA 57 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTCCTAAG AAGGTGGCAA CCCCGAAGAA GGCTGCTGCT GCTGCCGCCC CGGCCAGGAA 353 GGGCGTGGCC AGGAAGGCCA AGAAGTAGTC TGCCTGCCTT GCTCGCTGGC GAGATC 1 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||| GGGCGTGGCC AGGAAGGCCA AGAAGTAGTC TGCCTGCCTT G-TCGCTGGC GAGATC 408 hqPGS_1006078B06YNX-_5757399- (476 205,133 1) ******************************************************************************** EST sequence 2 -strand (File: 5936795-) 1 CGAGGGTGAA GAACTCCTTC AAGCTGCCGG CCNCCGACGC CAAGCCCAAG GCCGCCAAGC 61 CCAAGGCACC CAAGGCCGCG CCCAAGCCCA AGCCCTCGCC GAAGGCGAAG GCCAAGACCG 121 CTGCGAAGCC CAAGGCGGCG TCGCCCAAGC CCAAGGCCAA GGCCAAGGCC AAGGCCAAGC 181 CTGTCGCTCC TGCCGCCGCG TCGCCCAAGC CCCGCGGGCG CCCTCCCAAG GTCGCCAAGA 241 CCTCCGCCAA GGCCTCCCCC GCCAAGGCAG CCAAGAAGGC GGCTGCTCCT GCCAAGAAGG 301 GAAAGGCAGC GGCGGCTCCT AAGAAGGTGG CAACCCCGAA GAAGGCTGCT GCTGCTGCCG 361 CTCCGGTCAG GAAGGGCGTG GCCAGGAAGG CCAAGAAGTA GTCTGCCCGC CTTGTCGCTG 421 GCGAGATCCC CCCCTCAATT CCGCCTATAG ATTCCCCTCT TTCATGGATT TTGATCCAAT 481 CGTAATATTG TCAGTAGCTC TAGATTCGTC GGTAGCTCCA GCATGAGTGT CGGTGGTAGT 541 TCTGTGCCTG TAAAAACTTG GGATGGTTGA TCGCGTGTGA TCAGCCGTCA TGCTCCTCCA 601 GTCTCTATGA CAAGCTTAAG CTATAAATAA TATTTTGCTA AAAA Predicted gene structure (within gDNA segment 476 to 1): Exon 1 476 205 ( 272 n); cDNA 19 296 ( 278 n); score: 0.938 Intron 1 204 134 ( 71 n); Pd: 0.000 (s: 1.00), Pa: 0.902 (s: 1.00) Exon 2 133 1 ( 133 n); cDNA 297 428 ( 132 n); score: 0.970 MATCH 1006078B06YNX- 5936795- 0.948 405 0.851 G PGS_1006078B06YNX-_5936795- (476 205,133 1) Alignment (genomic DNA sequence = upper lines): TCAAGCTGCG GGCCACCGAC GCCAAGCCCA AGGCCGCCAA GCCCAAGGCA CCCAAGGCGG 417 ||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||| | TCAAGCTGCC GGCCNCCGAC GCCAAGCCCA AGGCCGCCAA GCCCAAGGCA CCCAAGGCCG 78 CGCCCAAGCC CAAGCCCTCG CCGAAGGCGA AGGCCAAGCC CGCTGCGAAG CCCAAGGCGG 357 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| CGCCCAAGCC CAAGCCCTCG CCGAAGGCGA AGGCCAAGAC CGCTGCGAAG CCCAAGGCGG 138 CGTCGCCCAA ACCCAAGGCC AAGGCCAAGG CCAA-G-C-- G--TGTCGCT CCTGCCGCCG 303 |||||||||| ||||||||| |||||||||| |||| | | | ||||||| |||||||||| CGTCGCCCAA GCCCAAGGCC AAGGCCAAGG CCAAGGCCAA GCCTGTCGCT CCTGCCGCCG 198 CGTCGCCCAA GCCCCGCGGG CGCCCTCCCA AGGTCGCCAA GACCTCCGCC AAGGCCTCCC 243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCGCCCAA GCCCCGCGGG CGCCCTCCCA AGGTCGCCAA GACCTCCGCC AAGGCCTCCC 258 CCGCCAAGGC AGCCAAGAAG GCGGCTGCTC CTGCCAAGAA GNNNNNNNNN NNNNNNNNNN 183 |||||||||| |||||||||| |||||||||| |||||||| CCGCCAAGGC AGCCAAGAAG GCGGCTGCTC CTGCCAAG.. .......... .......... 296 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NGCAATCTAT CTCGCCAAGA AGGGAAAGGC 123 | |||||||||| .......... .......... .......... .......... .........A AGGGAAAGGC 307 AGCGGCGGCT CCTAAGAAGG TGGCAACCCC GAAGAAGGCT GCTGCTGCTG CCGCCCCGGC 63 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| |||| AGCGGCGGCT CCTAAGAAGG TGGCAACCCC GAAGAAGGCT GCTGCTGCTG CCGCTCCGGT 367 CAGGAAGGGC GTGGCCAGGA AGGCCAAGAA GTAGTCTGCC TGCCTTGCTC GCTGGCGAGA 3 |||||||||| |||||||||| |||||||||| |||||||||| |||||| || |||||||||| CAGGAAGGGC GTGGCCAGGA AGGCCAAGAA GTAGTCTGCC CGCCTTG-TC GCTGGCGAGA 426 TC 1 || TC 428 hqPGS_1006078B06YNX-_5936795- (476 205,133 1) ******************************************************************************** EST sequence 4 +strand (File: 409594+) 1 CNCCCTCCCA AGGTCGCCAA GACTCCGCCA AGGCCTCCCC CGCCAAGGCA GCCAAGAAGG 61 CGCTNNTCCT GCCAAGAAGG GAAAGGCAGC GGCGGCTCCT AAGAAGGTGG CAACCCCGAA 121 GAAGGCTGCT GCTGCTGNNN CCCNNNCAGG AAGGGCGTGG CAGGAA Predicted gene structure (within gDNA segment 476 to 1): Exon 1 280 205 ( 76 n); cDNA 3 76 ( 74 n); score: 0.947 Intron 1 204 134 ( 71 n); Pd: 0.000 (s: 0.94), Pa: 0.902 (s: 1.00) Exon 2 133 42 ( 92 n); cDNA 77 166 ( 90 n); score: 0.913 MATCH 1006078B06YNX- 409594+ 0.929 168 1.012 C PGS_1006078B06YNX-_409594+ (280 205,133 42) Alignment (genomic DNA sequence = upper lines): CCCTCCCAAG GTCGCCAAGA CCTCCGCCAA GGCCTCCCCC GCCAAGGCAG CCAAGAAGGC 221 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CCCTCCCAAG GTCGCCAAGA -CTCCGCCAA GGCCTCCCCC GCCAAGGCAG CCAAGAAGGC 61 GGCTGCTCCT GCCAAGAAGN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 161 ||| |||| |||||| -GCTNNTCCT GCCAAG.... .......... .......... .......... .......... 76 NNNNNNNNNG CAATCTATCT CGCCAAGAAG GGAAAGGCAG CGGCGGCTCC TAAGAAGGTG 101 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......AAG GGAAAGGCAG CGGCGGCTCC TAAGAAGGTG 109 GCAACCCCGA AGAAGGCTGC TGCTGCTGCC GCCCCGGCCA GGAAGGGCGT GGCCAGGAA 42 |||||||||| |||||||||| |||||||| ||| || |||||||||| || |||||| GCAACCCCGA AGAAGGCTGC TGCTGCTG-N NNCCCNNNCA GGAAGGGCGT GG-CAGGAA 166 hqPGS_1006078B06YNX-_409594+ (280 205,133 42) ******************************************************************************** EST sequence 3 +strand (File: 6021436+) 1 ATTCGGCACG AGGAGAGGGT TGGGGAGAGT AGTAGTGATC CGCAATGTCG ACGGAGGAGG 61 CTGTTGTGGC TGAGGTCCCG GTGACCGAGG TGCCAGCGGA GGTCCCGGCG GCCCAGGTGG 121 CCGAGGCGCC CAAGGCGAAG AAGGCGCCCA AGGAGAAGAA GGCGCCTAAG GAGAAGAAGC 181 CGTCCGCGGC GAAGAAGCCG GCGGCGCACC CTCCCTATGC TGAGATGATT GTAGAGGCGA 241 TCGCTGCCCT CAAGGAGAGG AAGGGGTCGA GCTCGGTGGC CATCAGCAAG TACGTCGAGG 301 GGAAGCACGG CGGCAAGCTC CCCACCAACT TCCGCAAGCA GCTCACCGTG CAGCTGAAGA 361 AGCTCGCTGC CGCCGGTAAG CTGACGAGGG TGAAGAACTC CTTCAAGCTG CCGGCCACCG 421 ACGCCAAGCC CAAGGCCGCC AAGCCCAAGG CACCCAAGGC CGCGCCCAAG CCCAAGCCCT 481 CGCCGAAGGC GAAGGCCAAG ACCGCTGCGA AGCCCAAGGC GGCGTCGCCC AAGCCCAAGG 541 CCAAGGCCAA GGCCAAGGCC AAGCCTGTCG CTCCTGCCGN CGCGTCGCCC AAGCCCCGCG 601 GGCGCCCTCC AAGGTCGCCA AGAC Predicted gene structure (within gDNA segment 476 to 1): Exon 1 476 260 ( 217 n); cDNA 403 624 ( 222 n); score: 0.917 MATCH 1006078B06YNX- 6021436+ 0.917 217 0.456 G PGS_1006078B06YNX-_6021436+ (476 260) Alignment (genomic DNA sequence = upper lines): TCAAGCTGCG GGCCACCGAC GCCAAGCCCA AGGCCGCCAA GCCCAAGGCA CCCAAGGCGG 417 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | TCAAGCTGCC GGCCACCGAC GCCAAGCCCA AGGCCGCCAA GCCCAAGGCA CCCAAGGCCG 462 CGCCCAAGCC CAAGCCCTCG CCGAAGGCGA AGGCCAAGCC CGCTGCGAAG CCCAAGGCGG 357 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| CGCCCAAGCC CAAGCCCTCG CCGAAGGCGA AGGCCAAGAC CGCTGCGAAG CCCAAGGCGG 522 CGTCGCCCAA ACCCAAGGCC AAGGCCAAGG CCAA-G-C-- G--TGTCGCT CCTGCCGCCG 303 |||||||||| ||||||||| |||||||||| |||| | | | ||||||| ||||||| || CGTCGCCCAA GCCCAAGGCC AAGGCCAAGG CCAAGGCCAA GCCTGTCGCT CCTGCCGNCG 582 CGTCGCCCAA GCCCCGCGGG CGCCCTCCCA AGGTCGCCAA GAC 260 |||||||||| |||||||||| |||||| ||| |||||||||| ||| CGTCGCCCAA GCCCCGCGGG CGCCCT-CCA AGGTCGCCAA GAC 624 hqPGS_1006078B06YNX-_6021436+ (476 260) Total number of EST alignments reported: 4 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 476: PGL 1 (- strand): 476 1 AGS-1 (476 205,133 1) SCR (e 0.960 d 0.000 a 0.902,e 0.992) Exon 1 476 205 ( 272 n); score: 0.960 Intron 1 204 134 ( 71 n); Pd: 0.000 Pa: 0.902 Exon 2 133 1 ( 133 n); score: 0.992 PGS (476 205,133 1) 5757399- PGS (476 205,133 1) 5936795- PGS (280 205,133 42) 409594+ PGS (476 260) 6021436+ 3-phase translation of AGS-1 (-strand): . . . . . . 476 TCAAGCTGCGGGCCACCGACGCCAAGCCCAAGGCCGCCAAGCCCAAGGCACCCAAGGCGG S S C G P P T P S P R P P S P R H P R R Q A A G H R R Q A Q G R Q A Q G T Q G G K L R A T D A K P K A A K P K A P K A . . . . . . 416 CGCCCAAGCCCAAGCCCTCGCCGAAGGCGAAGGCCAAGCCCGCTGCGAAGCCCAAGGCGG R P S P S P R R R R R P S P L R S P R R A Q A Q A L A E G E G Q A R C E A Q G G A P K P K P S P K A K A K P A A K P K A . . . . . . 356 CGTCGCCCAAACCCAAGGCCAAGGCCAAGGCCAAGCGTGTCGCTCCTGCCGCCGCGTCGC R R P N P R P R P R P S V S L L P P R R V A Q T Q G Q G Q G Q A C R S C R R V A A S P K P K A K A K A K R V A P A A A S . . . . . . 296 CCAAGCCCCGCGGGCGCCCTCCCAAGGTCGCCAAGACCTCCGCCAAGGCCTCCCCCGCCA P S P A G A L P R S P R P P P R P P P P Q A P R A P S Q G R Q D L R Q G L P R Q P K P R G R P P K V A K T S A K A S P A . . . . : . . 236 AGGCAGCCAAGAAGGCGGCTGCTCCTGCCAAG : AAGGGAAAGGCAGCGGCGGCTCCTAAGA R Q P R R R L L L P R : R E R Q R R L L R G S Q E G G C S C Q : E G K G S G G S - E K A A K K A A A P A K : K G K A A A A P K . . . . . . 105 AGGTGGCAACCCCGAAGAAGGCTGCTGCTGCTGCCGCCCCGGCCAGGAAGGGCGTGGCCA R W Q P R R R L L L L P P R P G R A W P G G N P E E G C C C C R P G Q E G R G Q K V A T P K K A A A A A A P A R K G V A . . . . . 45 GGAAGGCCAAGAAGTAGTCTGCCTGCCTTGCTCGCTGGCGAGATC G R P R S S L P A L L A G E I E G Q E V V C L P C S L A R R K A K K - S A C L A R W R D Maximal non-overlapping open reading frames (>= 64 codons): >1006078B06YNX-_PGL-1_AGS-1_PPS_1 (476 205,133 1) (frame '1'; 405 bp, 135 residues) 1 SSCGPPTPSP RPPSPRHPRR RPSPSPRRRR RPSPLRSPRR RRPNPRPRPR PSVSLLPPRR 61 PSPAGALPRS PRPPPRPPPP RQPRRRLLLP RRERQRRLLR RWQPRRRLLL LPPRPGRAWP 121 GRPRSSLPAL LAGEI ... finished at: Mon Nov 10 17:48:33 2003 ________________________________________________________________________________ Sequence 6: 1006078D07YNX, from 1 to 889, both strands analyzed. ... started at: Mon Nov 10 17:48:33 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:33 2003 ________________________________________________________________________________ Sequence 7: 1006081H12YNX, from 1 to 897, both strands analyzed. ... started at: Mon Nov 10 17:48:33 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:33 2003 ________________________________________________________________________________ Sequence 8: 1006085G09YNX, from 1 to 554, both strands analyzed. ... started at: Mon Nov 10 17:48:33 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: 5030702-) 1 ACCTTCGGCT CCATCGGCAA GCAGGTGTGG TACGACAGGG AGGTGACGGC GTTCGTGGAG 61 CCCGGGCGGA TGCACGGCCT CGCCGGGGTG AAGAGCAAGG AGCTCCTCAT CTGGGTCACC 121 ATCTCCGAGA TCGTCCTCAG CCCCTCCGGC ACCAAGATCG TGTTCCGCAC CCCCGCGGGG 181 CTCGGCCGCG CCTTCCCTGT CCCCGCCTTC CAGCTCGAGC CCGCGGCGGC GGAGGGGGAC 241 CCCAAGGAGG AGGCCGAGGA CGCCGCCGCC GCCGCCGCCA ACTGATCTGC TCTAGCTTCC 301 GGCGGCGGCG GCCGTGCGTG GGCTGCTCGA TCCGGTAGTG GCAGTGGCTT TGTGAGACAG 361 TCGAGTCGAT TGTGGTTTCC CCTCCTCCGC CATGTGCGTG TAGTGGATGA TGATGCAGGA 421 ATAAACGGTG TCCCTGGATC CAGAACTCAC GGTTCGATCC ATCCAGTTTA TCTCATGCTT 481 GTGTATCTCT NATGTATGCA TTGCCTGTTT GTTCGCTGGA AAAAAAAAAA AAAAAAAAAA 541 AAAA Predicted gene structure (within gDNA segment 381 to 1): Exon 1 76 1 ( 76 n); cDNA 1 76 ( 76 n); score: 0.987 PPA cDNA 520 544 MATCH 1006085G09YNX- 5030702- 0.987 76 0.199 G PGS_1006085G09YNX-_5030702- (76 1) Alignment (genomic DNA sequence = upper lines): ACCTTCGGCT CCATCGGCAA GCAGGTGTGG TACGACAGGG AGGTGACGGC GTTCGTGGAG 17 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTCGGCT CCATCGGCAA GCAGGTGTGG TACGACAGGG AGGTGACGGC GTTCGTGGAG 60 CCGGGGCGGA TGCACG 1 || ||||||| |||||| CCCGGGCGGA TGCACG 76 hqPGS_1006085G09YNX-_5030702- (76 1) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 554: PGL 1 (- strand): 76 1 AGS-1 (76 1) SCR (e 0.987) Exon 1 76 1 ( 76 n); score: 0.987 PGS (76 1) 5030702- 3-phase translation of AGS-1 (-strand): . . . . . . 76 ACCTTCGGCTCCATCGGCAAGCAGGTGTGGTACGACAGGGAGGTGACGGCGTTCGTGGAG T F G S I G K Q V W Y D R E V T A F V E P S A P S A S R C G T T G R - R R S W S L R L H R Q A G V V R Q G G D G V R G . . 16 CCGGGGCGGATGCACG P G R M H R G G C T A G A D A Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 1 CGTGCATCCGCCCCGGCTCCACGAACGCCGTCACCTCCCTGTCGTACCACACCTGCTTGC R A S A P A P R T P S P P C R T T P A C V H P P R L H E R R H L P V V P H L L A C I R P G S T N A V T S L S Y H T C L . . 61 CGATGGAGCCGAAGGT R W S R R D G A E G P M E P K Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:33 2003 ________________________________________________________________________________ Sequence 9: 1006090F05YNX, from 1 to 780, both strands analyzed. ... started at: Mon Nov 10 17:48:33 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:34 2003 ________________________________________________________________________________ Sequence 10: 1006091D11YNX, from 1 to 932, both strands analyzed. ... started at: Mon Nov 10 17:48:34 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:34 2003 ________________________________________________________________________________ Sequence 11: 1006094A01YNX, from 1 to 938, both strands analyzed. ... started at: Mon Nov 10 17:48:34 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: 5030786-) 1 GCAAACTGGA CGAGGCGGCG GTGCAGCGCT TCTGCCAGGA GGTCGGCGTG AAGCGGCGCG 61 TGCTCAAGGT GTGGATGCAC AACAACAAGC ACACCCTGGC GCGGCGCGGC CACGCCGGGC 121 TCCCCGGCGA CCCGGAGCTG CTGGGGCCGC ACGACGGCCA GCTCGGCATG CCGCTCCCGG 181 AGCCGGCGGC GGAGCCCGCA GCTGCTGCTG CGGCTGGACT TGGAGTGACC GACCAAGCCA 241 TGTCTTTCGG GACTGGACGA CATTGATCAA CAGAGTCTAA TGCTGACTGA ATCAGCCTTG 301 CGGCATAGGG AAGCTGTTTT CTTTGTTAAT CTGCTGCTGA TCTCATCAAT CTAGCCGTAG 361 CTTTAGCTGC ATTTGCATTC CACTGTTCCA TCCATCCATC CATCCATCCT AGCTATCCAT 421 CAACCACAAA CTGATGATGC GGAGTCTCCA TGGATTTCTA TTCCTTGTTG ATTTCTGTAG 481 CTGCTCTCCC CGCTCTTGAC TTTAATTTTT TAGTGCTCGA GTGACTGGTG G Predicted gene structure (within gDNA segment 938 to 1): Exon 1 933 869 ( 65 n); cDNA 33 97 ( 65 n); score: 0.908 MATCH 1006094A01YNX- 5030786- 0.908 65 0.122 C PGS_1006094A01YNX-_5030786- (933 869) Alignment (genomic DNA sequence = upper lines): TGCGACGAGG TCTGCGTCAA GCGCCACGTG CTCAAGGTGT GGATGCACAA CAACAAGCAC 874 ||| | |||| || |||| || ||| | |||| |||||||||| |||||||||| |||||||||| TGCCAGGAGG TCGGCGTGAA GCGGCGCGTG CTCAAGGTGT GGATGCACAA CAACAAGCAC 92 ACCCT 869 ||||| ACCCT 97 hqPGS_1006094A01YNX-_5030786- (933 869) ******************************************************************************** EST sequence 2 -strand (File: 12969228-) 1 GGGTGGCGGC TGCAGAAGCT GGACGAGGCG GCGGTGCAGC GCTTCTGCCA GGAGGTCGGC 61 GTGAAGCGGC GCGTGCTCAA GGTGTGGATG CACAACAACA AGCACACCCT GGCGCGGCGC 121 GGCCACGCCG GGCTCCCCGG CGACCCGGAG CTGCTGGGGC CGCACGACGG CCAGCTCGGC 181 ATGCCGCTCC CGGAGCCGGC GGCGGAGCCC GCAGCTGCTG CTGCGGCTGG ACTTGGAGTG 241 ACCGACCAAG CCATGTCTTT CGGGACTGGA CGACATTGAT CAACAGAGTC TAATGCTGAC 301 TGAATCAGCC TTGCGGCATA GGGAAGCTGT TTTCTTTGTT AATCTGCTGC TGATCTCATC 361 AATCTAGCCG TAGCTTTAGC TGCATTTGCA TTCCACTGTT CCATCAAAAA ATACATCCAT 421 CCTAGCTATC CATCAACCAC AAACTGATGA TGCGGAGTCT CCATGGATTT CTATTCCTTG 481 TTGATTTCTG TAGCTGCTCT CCCCGCTCTT GACTTTAATT TTTTAGTGCT CGAGTGACTG 541 GTGGTTTGGG AGATGAGACT GAAAAAAAAA AAAAAAAAAA CTC Predicted gene structure (within gDNA segment 938 to 1): Exon 1 933 869 ( 65 n); cDNA 46 110 ( 65 n); score: 0.908 PPA cDNA 562 581 MATCH 1006094A01YNX- 12969228- 0.908 65 0.111 C PGS_1006094A01YNX-_12969228- (933 869) Alignment (genomic DNA sequence = upper lines): TGCGACGAGG TCTGCGTCAA GCGCCACGTG CTCAAGGTGT GGATGCACAA CAACAAGCAC 874 ||| | |||| || |||| || ||| | |||| |||||||||| |||||||||| |||||||||| TGCCAGGAGG TCGGCGTGAA GCGGCGCGTG CTCAAGGTGT GGATGCACAA CAACAAGCAC 105 ACCCT 869 ||||| ACCCT 110 hqPGS_1006094A01YNX-_12969228- (933 869) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 938: PGL 1 (- strand): 933 869 AGS-1 (933 869) SCR (e 0.908) Exon 1 933 869 ( 65 n); score: 0.908 PGS (933 869) 5030786- PGS (933 869) 12969228- 3-phase translation of AGS-1 (-strand): . . . . . . 933 TGCGACGAGGTCTGCGTCAAGCGCCACGTGCTCAAGGTGTGGATGCACAACAACAAGCAC C D E V C V K R H V L K V W M H N N K H A T R S A S S A T C S R C G C T T T S T R R G L R Q A P R A Q G V D A Q Q Q A . 873 ACCCT T P H P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 869 AGGGTGTGCTTGTTGTTGTGCATCCACACCTTGAGCACGTGGCGCTTGACGCAGACCTCG R V C L L L C I H T L S T W R L T Q T S G C A C C C A S T P - A R G A - R R P R G V L V V V H P H L E H V A L D A D L . 929 TCGCA S R V A Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:35 2003 ________________________________________________________________________________ Sequence 12: 1006095B03YNX, from 1 to 589, both strands analyzed. ... started at: Mon Nov 10 17:48:35 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:35 2003 ________________________________________________________________________________ Sequence 13: 1006101H05YNX, from 1 to 855, both strands analyzed. ... started at: Mon Nov 10 17:48:35 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 5439466+) 1 TGACGGCGCA GGCTGCGGAG GAGCTCGCCG CCCAGATCGA GCAGCAGAAG CTCGAGGAGC 61 AGAAGACCGA GGCAGAAGAG GTTGCGGTGG AGGAGGATGA CGAGGATGAT GAGGATGACG 121 ATGATGATGA CAAGGATGAT GATGAACTGG ATGGACAAGA AGGGGATGGG AGTGGCAAGT 181 CGAAGCAAAG CAGGAGTGAG AAGAAGAGCC GCAAGGCCAT GCTGAAGCTT GGCATGAAGC 241 CCATCACTGG TGTCAGCCGG GTCACTGTGA AGAAAAGCAA GAATATGCTT TTTGTCATCT 301 CGAAGCCAGA TGTGTTCAAG AGCCCAAACT CGGACACCTA AGTCATATTC GGCGAGGCGA 361 AGATCGAGGA CCTCAGCTCC CAGCTGCAGA CCCAAGCTGC AGAGCAGTTC AAGGCTCCTG 421 ACCTGAGCCA AATGATCCCG AAGCCTGAGA CATCTGGCCT GGGCCTGGAG GACAACGAGG 481 AGGAGGAGGT TGACGAAACT GGTGTCGAGG CCAAGGATGT CGAGCCTGGT GATGACTCAG 541 GCATCTGTTT CGAGGCCCAG GGCGGTCAAG G Predicted gene structure (within gDNA segment 429 to 855): Exon 1 788 855 ( 68 n); cDNA 4 71 ( 68 n); score: 0.882 MATCH 1006101H05YNX+ 5439466+ 0.882 68 0.159 G PGS_1006101H05YNX+_5439466+ (788 855) Alignment (genomic DNA sequence = upper lines): CGTCGCAACC CGCGGAGGAG CTCGCCACCC AGATCGAGCA GCAGAAGGGC GATGAGCAGA 847 || |||| | ||||||||| |||||| ||| |||||||||| ||||||| | || ||||||| CGGCGCAGGC TGCGGAGGAG CTCGCCGCCC AGATCGAGCA GCAGAAGCTC GAGGAGCAGA 63 AGACCGAG 855 |||||||| AGACCGAG 71 hqPGS_1006101H05YNX+_5439466+ (788 855) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 855: PGL 1 (+ strand): 788 855 AGS-1 (788 855) SCR (e 0.882) Exon 1 788 855 ( 68 n); score: 0.882 PGS (788 855) 5439466+ 3-phase translation of AGS-1 (+strand): . . . . . . 788 CGTCGCAACCCGCGGAGGAGCTCGCCACCCAGATCGAGCAGCAGAAGGGCGATGAGCAGA R R N P R R S S P P R S S S R R A M S R V A T R G G A R H P D R A A E G R - A E S Q P A E E L A T Q I E Q Q K G D E Q . 848 AGACCGAG R P D R K T E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 855 CTCGGTCTTCTGCTCATCGCCCTTCTGCTGCTCGATCTGGGTGGCGAGCTCCTCCGCGGG L G L L L I A L L L L D L G G E L L R G S V F C S S P F C C S I W V A S S S A G R S S A H R P S A A R S G W R A P P R . 795 TTGCGACG L R C D V A T Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:36 2003 ________________________________________________________________________________ Sequence 14: 1006102E03YNX, from 1 to 825, both strands analyzed. ... started at: Mon Nov 10 17:48:36 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 474252+) 1 CTGGGCCGCC GCGCCGCCCT AAGCCACGTG CTGAGGCTTT CGTTGGTCTC TTCGCCGGCG 61 ACGAGCACCC AGCAGTTCTG TAGAAATGGC TGATGGTGAG GACATCCAGC CTCTTGTCTG 121 CGACAATGGC ACTGGAATGG TCAAGGCTGG TTTTGCTGGC GATGATGCAC CAAGGGCGGT 181 TTT Predicted gene structure (within gDNA segment 825 to 268): Exon 1 790 718 ( 73 n); cDNA 73 145 ( 73 n); score: 0.973 Intron 1 717 635 ( 83 n); Pd: 1.000 (s: 0.96), Pa: 0.995 (s: 0) Exon 2 634 597 ( 38 n); cDNA 146 183 ( 38 n); score: 0.921 MATCH 1006102E03YNX- 474252+ 0.973 111 0.607 C PGS_1006102E03YNX-_474252+ (790 718,634 597) Alignment (genomic DNA sequence = upper lines): CAGTTCTGTA GAAATGGCTG ATGGTGAGGA CATCCAGCCT CTTGTCTGCG ACAATGGAAC 731 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || CAGTTCTGTA GAAATGGCTG ATGGTGAGGA CATCCAGCCT CTTGTCTGCG ACAATGGCAC 132 CGGAATGGTC AAGGTCAGTG CTTTCCCCCC TTAATTTGTA CAGCCATAGT CTCCCCCACC 671 ||||||||| ||| TGGAATGGTC AAG....... .......... .......... .......... .......... 145 CAAATATGCC ACTAATTATG TGTATCTATC TTCTAGGCTG GTTTTGCCGG CGATGATGCA 611 |||| ||||||| || |||||||||| .......... .......... .......... ......GCTG GTTTTGCTGG CGATGATGCA 169 CCAAGGGCTG TATT 597 |||||||| | | || CCAAGGGCGG TTTT 183 hqPGS_1006102E03YNX-_474252+ (790 718,634 597) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 825: PGL 1 (- strand): 790 597 AGS-1 (790 718,634 597) SCR (e 0.973 d 1.000 a 0.995,e 0.921) Exon 1 790 718 ( 73 n); score: 0.973 Intron 1 717 635 ( 83 n); Pd: 1.000 Pa: 0.995 Exon 2 634 597 ( 38 n); score: 0.921 PGS (790 718,634 597) 474252+ 3-phase translation of AGS-1 (-strand): . . . . . . 790 CAGTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAAC Q F C R N G - W - G H P A S C L R Q W N S S V E M A D G E D I Q P L V C D N G T V L - K W L M V R T S S L L S A T M E . . : . . . . 730 CGGAATGGTCAAG : GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATT R N G Q : G W F C R R - C T K G C I G M V K : A G F A G D D A P R A V P E W S R : L V L P A M M H Q G L Y Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:36 2003 ________________________________________________________________________________ Sequence 15: 1006107C06YNX, from 1 to 980, both strands analyzed. ... started at: Mon Nov 10 17:48:36 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 13198608+) 1 ACTACTCCTC GGATAGCCAC GGCAGCAGCA GCAGCCATGG CTTGCTCCGC GCACCTTGTG 61 TCCCAGAGCC TCTACTCGTC CCACCGCGCC AGCCCGGGCG GGCCTAGGAA TCTCCGTTCC 121 CAGGGCCGAC CGCCGGCGCG GGCGTCTCCC TCTGCGAGGC CTGGCTCAAG GGTCAGTGGC 181 TGCCGGGGTG TCAGCCTGAG AGTCGCCGCG TCGTTCGAGC AGGGAAGGAG GCAAGTGGAG 241 GTCTCTTATG ACCCACAAGC GAGGTTTAAC CAGATAGCAG ACCAAATTGA CAAGGATGCT 301 GGGATGACAC GGCTTAACCT ATTCTCACCT TGCAAAATTA ATGTGTTCTT GAGGATAACG 361 GGCAAGAGAC CAGATGGGTT CCATGACCTG GCTTCTCTAT TTCATGTCAT AAGTTTGGGT 421 GATACTATCA AATTCTCATT GTCACCAAGT AAAAGTAGAG ATCGCCTGTC AACCAAT Predicted gene structure (within gDNA segment 1 to 980): Exon 1 1 95 ( 95 n); cDNA 146 240 ( 95 n); score: 0.989 MATCH 1006107C06YNX+ 13198608+ 0.989 95 0.199 C PGS_1006107C06YNX+_13198608+ (1 95) Alignment (genomic DNA sequence = upper lines): CTCCCTCTGC GAGGCCTGGC TCGAGGGTCA GTGGCTGCCG GGGTGTCAGC CTGAGAGTCG 60 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| CTCCCTCTGC GAGGCCTGGC TCAAGGGTCA GTGGCTGCCG GGGTGTCAGC CTGAGAGTCG 205 CCGCGTCGTT CGAGCAGGGA AGGAGGCAAG TGGAG 95 |||||||||| |||||||||| |||||||||| ||||| CCGCGTCGTT CGAGCAGGGA AGGAGGCAAG TGGAG 240 hqPGS_1006107C06YNX+_13198608+ (1 95) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 980: PGL 1 (+ strand): 1 95 AGS-1 (1 95) SCR (e 0.989) Exon 1 1 95 ( 95 n); score: 0.989 PGS (1 95) 13198608+ 3-phase translation of AGS-1 (+strand): . . . . . . 1 CTCCCTCTGCGAGGCCTGGCTCGAGGGTCAGTGGCTGCCGGGGTGTCAGCCTGAGAGTCG L P L R G L A R G S V A A G V S A - E S S L C E A W L E G Q W L P G C Q P E S R P S A R P G S R V S G C R G V S L R V . . . . 61 CCGCGTCGTTCGAGCAGGGAAGGAGGCAAGTGGAG P R R S S R E G G K W R V V R A G K E A S G A A S F E Q G R R Q V E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 95 CTCCACTTGCCTCCTTCCCTGCTCGAACGACGCGGCGACTCTCAGGCTGACACCCCGGCA L H L P P S L L E R R G D S Q A D T P A S T C L L P C S N D A A T L R L T P R Q P L A S F P A R T T R R L S G - H P G . . . . 35 GCCACTGACCCTCGAGCCAGGCCTCGCAGAGGGAG A T D P R A R P R R G P L T L E P G L A E G S H - P S S Q A S Q R E Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:37 2003 ________________________________________________________________________________ Sequence 16: 1006109A02YNX, from 1 to 926, both strands analyzed. ... started at: Mon Nov 10 17:48:37 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:37 2003 ________________________________________________________________________________ Sequence 17: 1006116H11YNX, from 1 to 771, both strands analyzed. ... started at: Mon Nov 10 17:48:37 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 5455745+) 1 AAACTTGAAA AAGTTTATAT AGCCGACAAA TTAAACACTC GACAACTGGT TACACTTGCA 61 GACAAACAAC CGAGCAAAAA ATCAAACAAC AAAAGTATGA AGCATATCGG GATGGGATGG 121 GATGCGATGC GATGCAATGC AATGCAATGC AAGGGCCCCT TGTGATTTGG ATTTGGCGCC 181 CCAGATTTAC TCCCGGATCA CATGACGATC TCGGGCTTGA GGATGCTGGA TTTGATCTCC 241 TTGTGCGGGA GCACGACGCC GCCGTTGCTG TAGATCTCGT CGCAGACGTG GACGTCCTCG 301 CCGAGGATGG TCATGTTCTC GACGCGCGCC CACTTGCCGA CGGTGGAGTG CCAGCCGATG 361 ATGCTGCTGG AGACGCAGGC GTGCTGCTTG ACGCGCGCGG CGCGCATGAC GGTGCAGCGG 421 GACAGGCGCA CCCCGGCCTC CACCACGCAG CCTGGCCCGA CCGCGACGTC GGGCCCGATG 481 AGGCAGCCGT CCCCGATGAC CGCGGTCTCG TGCACCAGCA CGTTGCCCAG GACGTGCGCG 541 CCCGACGCGA GCCTGGCCTC GTGCCGAATT Predicted gene structure (within gDNA segment 771 to 60): Exon 1 771 544 ( 228 n); cDNA 294 521 ( 228 n); score: 0.978 Intron 1 543 466 ( 78 n); Pd: 0.956 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 465 432 ( 34 n); cDNA 522 555 ( 34 n); score: 1.000 MATCH 1006116H11YNX- 5455745+ 0.978 262 0.460 C PGS_1006116H11YNX-_5455745+ (771 544,465 432) Alignment (genomic DNA sequence = upper lines): GTCCTCGCCG AGGATGGTCA TGTTCTCGTC GCGTGCCTAC TATCCGACGG TGGAGTGCCA 712 |||||||||| |||||||||| |||||||| | ||| ||| || | ||||||| |||||||||| GTCCTCGCCG AGGATGGTCA TGTTCTCGAC GCGCGCCCAC TTGCCGACGG TGGAGTGCCA 353 GCCGATGATG CTGCTGGAGA CGCAGGCGTG CTGCTTGACG CGCGCGGCGC GCATGACGGT 652 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGATGATG CTGCTGGAGA CGCAGGCGTG CTGCTTGACG CGCGCGGCGC GCATGACGGT 413 GCAGCGGGAC AGGCGCACCC CGGCCTCCAC CACGCAGCCT GGCCCGACCG CGACGTCGGG 592 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCGGGAC AGGCGCACCC CGGCCTCCAC CACGCAGCCT GGCCCGACCG CGACGTCGGG 473 CCCGATGAGG CAGCCGTCCC CGATGACCGC GGTCTCGTGC ACCAGCACGT TGCCCAGGAG 532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CCCGATGAGG CAGCCGTCCC CGATGACCGC GGTCTCGTGC ACCAGCAC.. .......... 521 AGATAATTGC CATTATGGNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 472 .......... .......... .......... .......... .......... .......... 521 NNNNNNNNTG CCCAGGACGT GCGCGCCCGA CGCGAGCCTG 432 || |||||||||| |||||||||| |||||||||| ......GTTG CCCAGGACGT GCGCGCCCGA CGCGAGCCTG 555 hqPGS_1006116H11YNX-_5455745+ (771 544,465 432) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 771: PGL 1 (- strand): 771 432 AGS-1 (771 544,465 432) SCR (e 0.978 d 0.956 a 0.000,e 1.000) Exon 1 771 544 ( 228 n); score: 0.978 Intron 1 543 466 ( 78 n); Pd: 0.956 Pa: 0.000 Exon 2 465 432 ( 34 n); score: 1.000 PGS (771 544,465 432) 5455745+ 3-phase translation of AGS-1 (-strand): . . . . . . 771 GTCCTCGCCGAGGATGGTCATGTTCTCGTCGCGTGCCTACTATCCGACGGTGGAGTGCCA V L A E D G H V L V A C L L S D G G V P S S P R M V M F S S R A Y Y P T V E C Q P R R G W S C S R R V P T I R R W S A . . . . . . 711 GCCGATGATGCTGCTGGAGACGCAGGCGTGCTGCTTGACGCGCGCGGCGCGCATGACGGT A D D A A G D A G V L L D A R G A H D G P M M L L E T Q A C C L T R A A R M T V S R - C C W R R R R A A - R A R R A - R . . . . . . 651 GCAGCGGGACAGGCGCACCCCGGCCTCCACCACGCAGCCTGGCCCGACCGCGACGTCGGG A A G Q A H P G L H H A A W P D R D V G Q R D R R T P A S T T Q P G P T A T S G C S G T G A P R P P P R S L A R P R R R . . . . . : . 591 CCCGATGAGGCAGCCGTCCCCGATGACCGCGGTCTCGTGCACCAGCAC : NNTGCCCAGGAC P D E A A V P D D R G L V H Q H : X A Q D P M R Q P S P M T A V S C T S X : X P R T A R - G S R P R - P R S R A P A : X C P G . . . 453 GTGCGCGCCCGACGCGAGCCTG V R A R R E P C A P D A S L R A R P T R A Maximal non-overlapping open reading frames (>= 64 codons): >1006116H11YNX-_PGL-1_AGS-1_PPS_2 (771 544,465 433) (frame '1'; 261 bp, 87 residues) 1 VLAEDGHVLV ACLLSDGGVP ADDAAGDAGV LLDARGAHDG AAGQAHPGLH HAAWPDRDVG 61 PDEAAVPDDR GLVHQHXAQD VRARREP >1006116H11YNX-_PGL-1_AGS-1_PPS_1 (770 544,465 432) (frame '2'; 261 bp, 87 residues) 1 SSPRMVMFSS RAYYPTVECQ PMMLLETQAC CLTRAARMTV QRDRRTPAST TQPGPTATSG 61 PMRQPSPMTA VSCTSXXPRT CAPDASL ... finished at: Mon Nov 10 17:48:38 2003 ________________________________________________________________________________ Sequence 18: 1006117D12YNX, from 1 to 679, both strands analyzed. ... started at: Mon Nov 10 17:48:38 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 3 ******************************************************************************** EST sequence 2 -strand (File: 5555585-) 1 AGGTGCGGCT CGAAGTCGGC GTCGAAGAGG ATGTTCTGCG GCTTCACGTC GCCGTGCACG 61 ACGCCGGACT GATGCAGGAA CGCAAGGCCG CGCGAGACGC CCAGCGCGAT GAGGTGCCTC 121 ATTGGCCAGT TGAGGATGTG CCCGTCCTGG TGTGACGCTT CCTGCAGCAA CGTGGCGAGG 181 TTGCCGTTGG GCATGTAGTC GTAGACCAGC AGCCGGACAT CCGGCGGAGG ACCGGCGTAG 241 TAGCCACGGA GCACAGTGAG GTTCCTGTGC TTCACTTTCC CGAGAGATTC AGCCTCTTTC 301 CTGAACGACC CTTCATCAAT CACCACGGCA CCATCAGCAG ACGTGGACGG AAGCCGCAGA 361 ATCGCTAGCA CGGTGCCGTC ACTGTAACAA GCCTTGAACA CGAGGCCATG GCGGCCTCGG 421 CTGAGCACGT TCTCCTCGTC AAACTGGCGG GTTGCCTCAA CAGTGTCGGC ATAAGTGATC 481 CTTGAGTTGA ACATAATCAG CTTCGGCTGG CTGACACCGT TCTCCGTGCT TGTGCCACTC 541 GACCCACTGC CGCGTCCCGG GCTGCGTCTC CTCTTCTTCA CACCATCACG GCTCTCGTCA Predicted gene structure (within gDNA segment 1 to 666): Exon 1 3 190 ( 188 n); cDNA 409 596 ( 188 n); score: 0.920 MATCH 1006117D12YNX+ 5555585- 0.920 188 0.313 C PGS_1006117D12YNX+_5555585- (3 190) Alignment (genomic DNA sequence = upper lines): TGGCGGCCTC GGCTGAGCAC GTTCTCCTCG TCGAACTGGC GGGTCGCCTC AACCGTGTCA 62 |||||||||| |||||||||| |||||||||| || ||||||| |||| ||||| ||| ||||| TGGCGGCCTC GGCTGAGCAC GTTCTCCTCG TCAAACTGGC GGGTTGCCTC AACAGTGTCG 468 GCGTAAGTGA TCCTGGAATT GAACATGATC AGCTTCGGCT GGCTGACGCC GTTCTCCGTG 122 || ||||||| |||| || || |||||| ||| |||||||||| ||||||| || |||||||||| GCATAAGTGA TCCTTGAGTT GAACATAATC AGCTTCGGCT GGCTGACACC GTTCTCCGTG 528 CTCGTGCCGC TCGACCCACT GCCGCGTCCT GGGCTGCGTC TTCTCTTCTT GACACCGTCA 182 || ||||| | |||||||||| ||||||||| |||||||||| | |||||||| ||||| ||| CTTGTGCCAC TCGACCCACT GCCGCGTCCC GGGCTGCGTC TCCTCTTCTT CACACCATCA 588 CGGCTCTC 190 |||||||| CGGCTCTC 596 hqPGS_1006117D12YNX+_5555585- (3 190) ******************************************************************************** EST sequence 1 -strand (File: 5268606-) 1 GGCTTCACGT CACCGTGCCG ACGCCGGACT GATGCAGAAN CCAAGCCCGC GCGAAACGCC 61 CAGCGCGATG AGGTGCCTCA TTGGCCAGTT GAGAATGTGC CCGTCCTGGT GTGACGCTTC 121 CTGCAGCAAC GTGGCGAGGT TGCCGTTGGG CATGTAGTCG TAGGCCAGCA GCCGGACATC 181 CGGCGGAGGA CCGGCGTAGT AGCCACGGAG CACAGTGAGG TTCCTGTGCT TCNCTTTCCC 241 GAGAGATTCA GCCTCTTTCC TGAACGACCC TTCATCAATC ACCACGGCAC CATCAGCAGA 301 CGTGGACGGA AGCCGCANAA TCGCTAGCAC GGTGCCGTCA CTGTAACAAG CCTTGAACAC 361 GAGGCCATGG CGGCCTCGGC TGAGCACGTT CTCCTCGTCA AACTGGCGGG TTGCCTCAAC 421 AGTGTCGGCA TAAGTGATCC TTGAGTTGAA CATAATCAGC TTCGGCTGGC TGACACCGTT 481 CTCCGTGCTT GTGCCACTCG ACCCTCTGCC GCGTCCCGGG CTGCGTCTCC TCTTCTTCA Predicted gene structure (within gDNA segment 1 to 679): Exon 1 3 172 ( 170 n); cDNA 368 537 ( 170 n); score: 0.918 MATCH 1006117D12YNX+ 5268606- 0.918 170 0.315 C PGS_1006117D12YNX+_5268606- (3 172) Alignment (genomic DNA sequence = upper lines): TGGCGGCCTC GGCTGAGCAC GTTCTCCTCG TCGAACTGGC GGGTCGCCTC AACCGTGTCA 62 |||||||||| |||||||||| |||||||||| || ||||||| |||| ||||| ||| ||||| TGGCGGCCTC GGCTGAGCAC GTTCTCCTCG TCAAACTGGC GGGTTGCCTC AACAGTGTCG 427 GCGTAAGTGA TCCTGGAATT GAACATGATC AGCTTCGGCT GGCTGACGCC GTTCTCCGTG 122 || ||||||| |||| || || |||||| ||| |||||||||| ||||||| || |||||||||| GCATAAGTGA TCCTTGAGTT GAACATAATC AGCTTCGGCT GGCTGACACC GTTCTCCGTG 487 CTCGTGCCGC TCGACCCACT GCCGCGTCCT GGGCTGCGTC TTCTCTTCTT 172 || ||||| | ||||||| || ||||||||| |||||||||| | |||||||| CTTGTGCCAC TCGACCCTCT GCCGCGTCCC GGGCTGCGTC TCCTCTTCTT 537 hqPGS_1006117D12YNX+_5268606- (3 172) ******************************************************************************** EST sequence 3 -strand (File: 5566683-) 1 GACATCCGGC GGAGGACCGG CGTAGTAGCC ACGGAGCACA GTGAGGTTCC TGTGCTTCAC 61 TTTCCCGAGA GATTCAGCCT CTTTCCTGAA CGACCCTTCA TCAATCACCA CGGCACCATC 121 AGCAGACGTG GACGGAAGCC GCAGAATCGC TAGCACGGTG CCGTCACTGT AACAAGCCTT 181 GAACACGAGG CCATGGCGGC CTCGGCTGAG CACGTTCTCC TCGTCAAACT GGCGGGTTGC 241 CTCAACAGTG TCGGCATAAG TGATCCTTGA GTTGAACATA ATCAGCTTCG GCTGGCTGAC 301 ACCGTTCTCC GTGCTTGTGC CACTCGACCC ACTGCCGCGT CCCGGGCTGC GTCTCCTCTT 361 CTT Predicted gene structure (within gDNA segment 1 to 556): Exon 1 3 172 ( 170 n); cDNA 194 363 ( 170 n); score: 0.924 MATCH 1006117D12YNX+ 5566683- 0.924 170 0.468 C PGS_1006117D12YNX+_5566683- (3 172) Alignment (genomic DNA sequence = upper lines): TGGCGGCCTC GGCTGAGCAC GTTCTCCTCG TCGAACTGGC GGGTCGCCTC AACCGTGTCA 62 |||||||||| |||||||||| |||||||||| || ||||||| |||| ||||| ||| ||||| TGGCGGCCTC GGCTGAGCAC GTTCTCCTCG TCAAACTGGC GGGTTGCCTC AACAGTGTCG 253 GCGTAAGTGA TCCTGGAATT GAACATGATC AGCTTCGGCT GGCTGACGCC GTTCTCCGTG 122 || ||||||| |||| || || |||||| ||| |||||||||| ||||||| || |||||||||| GCATAAGTGA TCCTTGAGTT GAACATAATC AGCTTCGGCT GGCTGACACC GTTCTCCGTG 313 CTCGTGCCGC TCGACCCACT GCCGCGTCCT GGGCTGCGTC TTCTCTTCTT 172 || ||||| | |||||||||| ||||||||| |||||||||| | |||||||| CTTGTGCCAC TCGACCCACT GCCGCGTCCC GGGCTGCGTC TCCTCTTCTT 363 hqPGS_1006117D12YNX+_5566683- (3 172) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 679: PGL 1 (+ strand): 3 190 AGS-1 (3 190) SCR (e 0.924) Exon 1 3 190 ( 188 n); score: 0.924 PGS (3 190) 5555585- PGS (3 172) 5268606- PGS (3 172) 5566683- 3-phase translation of AGS-1 (+strand): . . . . . . 3 TGGCGGCCTCGGCTGAGCACGTTCTCCTCGTCGAACTGGCGGGTCGCCTCAACCGTGTCA W R P R L S T F S S S N W R V A S T V S G G L G - A R S P R R T G G S P Q P C Q A A S A E H V L L V E L A G R L N R V . . . . . . 63 GCGTAAGTGATCCTGGAATTGAACATGATCAGCTTCGGCTGGCTGACGCCGTTCTCCGTG A - V I L E L N M I S F G W L T P F S V R K - S W N - T - S A S A G - R R S P C S V S D P G I E H D Q L R L A D A V L R . . . . . . 123 CTCGTGCCGCTCGACCCACTGCCGCGTCCTGGGCTGCGTCTTCTCTTCTTGACACCGTCA L V P L D P L P R P G L R L L F L T P S S C R S T H C R V L G C V F S S - H R H A R A A R P T A A S W A A S S L L D T V . 183 CGGCTCTC R L G S T A L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 190 GAGAGCCGTGACGGTGTCAAGAAGAGAAGACGCAGCCCAGGACGCGGCAGTGGGTCGAGC E S R D G V K K R R R S P G R G S G S S R A V T V S R R E D A A Q D A A V G R A E P - R C Q E E K T Q P R T R Q W V E . . . . . . 130 GGCACGAGCACGGAGAACGGCGTCAGCCAGCCGAAGCTGATCATGTTCAATTCCAGGATC G T S T E N G V S Q P K L I M F N S R I A R A R R T A S A S R S - S C S I P G S R H E H G E R R Q P A E A D H V Q F Q D . . . . . . 70 ACTTACGCTGACACGGTTGAGGCGACCCGCCAGTTCGACGAGGAGAACGTGCTCAGCCGA T Y A D T V E A T R Q F D E E N V L S R L T L T R L R R P A S S T R R T C S A E H L R - H G - G D P P V R R G E R A Q P . 10 GGCCGCCA G R A A R P P Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:39 2003 ________________________________________________________________________________ Sequence 19: 1006120C05YNX, from 1 to 254, both strands analyzed. ... started at: Mon Nov 10 17:48:39 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 5 ******************************************************************************** EST sequence 2 -strand (File: 4314896-) 1 AGACTGGTCT TATTATGCTC CGAAACACCT TGAACATCAA GTGCTCGCAG TCGTGCCCGC 61 GACTCCACTC GTGTCATGAT GTCGGCACAA GTCCGACCTA CCCACTGAGG TCGGTTNCAG 121 AGGAAGATGG GCAGGCGTTA NCGGAGAAGG AAGGCCTATC CTTCCTCGAG ACATCCGCCC 181 TCGAAGCCCT TAACGTCGAG AAGGCGTTTC AGACCGTCCT CTCCGACATC CATCAGATCA 241 TAAGCAAGAA GGCGCTTGCA GCCCAAGAGG CAGCAGGTAG TGGACCTCCA GGTCAAGGAA 301 CCACCATCAA CGTTGCGGAT TCGTCTGCCA ACATGAAGGG AGGGTGCTGC TCTTCCTAGG 361 TGTGCAGACA AAGACATGCT GCTGCTGCTG CAAAAAAGAG AGAGAGAAAC CTCATGGATC 421 GTACGATACT TTAGGTGTTA TGTAGGTGAC GACTCCTTTT GGCCTGTAAC TCCGGTGGGT 481 TGTAATCACA GTTCATACTT CTGCAAAGAA ATCCTCCTCT CAGGTAGATA TGGCGTGTAG 541 TTTTTGAAAT TTTGGTAGAG AGCGATGGTT GGCAGACTTG CGTGGAGCCC AGCTTGGTGT 601 TTTCTTTCAG TGTTCTATCT TAAGTAGCCC TCTGCTGGAA AAAGGACCCA GATATTTCTT 661 GTATTTGTAC TCGAGTTTGC GGTGTTACCA GATATNCTTT GATTCCGGTG CTAAATAAAA 721 AAAAAAAAAA AACT Predicted gene structure (within gDNA segment 1 to 254): Exon 1 17 82 ( 66 n); cDNA 72 133 ( 62 n); score: 0.758 Intron 1 83 147 ( 65 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.86) Exon 2 148 254 ( 107 n); cDNA 134 230 ( 97 n); score: 0.752 PPA cDNA 713 732 MATCH 1006120C05YNX+ 4314896- 0.754 173 0.681 G PGS_1006120C05YNX+_4314896- (17 82,148 254) Alignment (genomic DNA sequence = upper lines): TGTTATGATG GTCGGTAACA AGTCGGACTT GAACCACCTT AGGTCGGTCC CCGAGGAAGA 76 ||| ||||| ||||| | || |||| ||| | | ||| || |||||||| | |||||||| TGTCATGAT- GTCGGCA-CA AGTCCGACCT -ACCCA-CTG AGGTCGGTTN CAGAGGAAGA 127 CAGACAGCCA GGCATTTTCG TTCGGAGNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 136 | || TGGGCA.... .......... .......... .......... .......... .......... 133 NNNNNNNNNN NNNNNNNGTC GGAGAAGGAA GGCCTGTCCT TCCTCGAGAC ATCTGCCCCT 196 | |||||||||| ||||| |||| |||||||||| ||| | |||| .......... .GGCGTTANC GGAGAAGGAA GGCCTATCCT TCCTCGAGAC ATCCG-CCCT 181 GGAGGGGGGC AATAAACGTC GAGAAGGCGT TCCACACCAC ACCATCTTGA GCGAGATC 254 || | | ||| |||| |||||||||| | || ||| || || | ||| ||| CGA---AGCC CTTAA-CGTC GAGAAGGCGT TTCAGACC-G TCC-TC-T-- CCGACATC 230 hqPGS_1006120C05YNX+_4314896- (17 82,148 254) ******************************************************************************** EST sequence 1 -strand (File: 4314875-) 1 GACCTGAACC GCCTAGGTCG GTTCCAGAGG AAGATGGGCA GGCGTTACGA AGAAGGAAGG 61 CCTATCCTTC CTCGAGACAT CCGCCCTCGA AGCCCTTAAC GTCGAGAAGG CGTTTCAGCC 121 GGTCCTGTCC GACATCCATC AGATCATAAG CAAGAAGGCG CTTGCAGCCC AAGAGGCAGC 181 AGGTAGTGGA CCTCCAGGTC AAGGAACCAC CATCAACGTT GCGGATTCGT CTGCCAACAT 241 GAAGGGAGGG TGCTGCTCTT CCTAGGTGTG CAGACAAAGA CATGCTGCTG CTGCTGCAAA 301 AAAGAGAGAG AGAAACCTCA TGGATCGTNC GATACTTTAG GTGTTATGTA GGTGACGACT 361 CCTTTTGGCC TGTAACTCCG GTGGGTTGTA CTCCCAGTTC ATACTTCTGC AAAGAAATCC 421 TCATAACCCC CACATATGGC GTGTAGTTTT TGAAATTTTG GTAGAGAGCG ATGGTTGGCA 481 GACTTGCGTG GAGCCCAGCT TGGTGTTTTC TTTCAGTGTT CTATCTTAAG TAGCCCTCTG 541 CTGGAAAAAG GACCCNAGAT ATTTCCCCCC CCCCCCCACA AAAAGTTTNC CGGTGTTCCC 601 AAATATCTT Predicted gene structure (within gDNA segment 1 to 254): Exon 1 156 254 ( 99 n); cDNA 48 136 ( 89 n); score: 0.737 MATCH 1006120C05YNX+ 4314875- 0.737 99 0.390 G PGS_1006120C05YNX+_4314875- (156 254) Alignment (genomic DNA sequence = upper lines): CGGAGAAGGA AGGCCTGTCC TTCCTCGAGA CATCTGCCCC TGGAGGGGGG CAATAAACGT 215 || ||||||| |||||| ||| |||||||||| |||| | ||| | || | | | ||||| CGAAGAAGGA AGGCCTATCC TTCCTCGAGA CATCCG-CCC TCGA----AG CCCTTAACGT 102 CGAGAAGGCG TTCCACACCA CACCATCTTG AGCGAGATC 254 |||||||||| || || | | || || ||| ||| CGAGAAGGCG TT--TCA--G C-CGGTCCTG TCCGACATC 136 hqPGS_1006120C05YNX+_4314875- (156 254) ******************************************************************************** EST sequence 3 -strand (File: 4321044-) 1 GTGTCATATG TCGCACAGTC CGACNTGANC CNCTGAGTCG GTTCCAGAGG AAGATGGGCA 61 GGCGTTAGCG GAGAAGGAAG GCCTATCCTT CCTCGAGACA TCCGCCCTCG AAGCCCTTAA 121 CGTCGAGAAG GCGTTTCAGA CCGTCCTCTC CGACATCCAT CAGATCATAA GCAAGAAGGC 181 GCTTGCAGCC CAAGAGGCAG CAGGTAGTGG ACCTCCAGGT CAAGGAACCA CCATCAACGT 241 TGCGGATTCG TCTGCCAACA TGAAGGGAGG GTGCTGCTCT TCCTAGGTGT GCAGACAAAG 301 ACATGCTGCT GCTGCTGCAA AAAAGAGAGA GAGAAACCTC ATGGATCGTA CGATACTTTA 361 GGTGTTATGT AGGTGACGAC TCCTTTTGGC CTGTAACTCC GGTGGGTTGT AATCACAGTT 421 CATACTTCTG CAAAGAAATC CTCCTCTCAG GTAGATATGG CGTGTAGTTT TTGAAATTTT 481 GGTAGAGAGC GATGGTTGGC AGACTTGCGT GGAGCCCAGC TTGGTGTTTT CTTTCAGTGT 541 TCTATCTTAA GTAGCCCTCT GCTGGAAAAA GGACCCAGAT ATTTCTTGTA TTTGTACTCG 601 AGTTTGCGGT GT Predicted gene structure (within gDNA segment 1 to 254): Exon 1 156 254 ( 99 n); cDNA 69 157 ( 89 n); score: 0.768 MATCH 1006120C05YNX+ 4321044- 0.768 99 0.390 G PGS_1006120C05YNX+_4321044- (156 254) Alignment (genomic DNA sequence = upper lines): CGGAGAAGGA AGGCCTGTCC TTCCTCGAGA CATCTGCCCC TGGAGGGGGG CAATAAACGT 215 |||||||||| |||||| ||| |||||||||| |||| | ||| | || | | | ||||| CGGAGAAGGA AGGCCTATCC TTCCTCGAGA CATCCG-CCC TCGA----AG CCCTTAACGT 123 CGAGAAGGCG TTCCACACCA CACCATCTTG AGCGAGATC 254 |||||||||| || || ||| || || | ||| ||| CGAGAAGGCG TTTCAGACC- GTCC-TC-T- -CCGACATC 157 hqPGS_1006120C05YNX+_4321044- (156 254) ******************************************************************************** EST sequence 4 -strand (File: 6538984-) 1 AGGTCGGTTC CAGAGGAAGA TGGGCAGGCG TTAGCGGAGA AGGAAGGCCT ATCCTTCCTC 61 GAGACATCCG CCCTCGAAGC CCTTAACGTC GAGAAGGCGT TTCAGACCGT CCTCTCCGAC 121 ATCCATCAGA TCATAAGCAA GAAGGCGCTT GCAGCCCAGG AGGCAGCAGG CAGTGGACCT 181 CCAGGTCAAG GAACCACCAT CAACGTTGCG GATTCGTCTG CCAACATGAA GGGAGGGTGC 241 TGCTCTTCCT AGGTGCAGAC AAAGACATGC TGCTGCTGCT GCTGCTGCTG CAAAGAAGAG 301 AGAGAGAAAC CTCATGGATC GTACGATACT TTAGGTGTTA TGTAGGTGAC GACTCCTTTT 361 GGCCTGTAAC TCCGGTGGGT TGTAATCACA GTTCATACTT CTGCAAAGAA ATCCTCCTCT 421 CAGGTAGATA TGGCGTGTAG TTTCTGAAAT TTTGGTAGAG ACCGATGGTT GGCAGACTTG 481 CGTGGAGCCC AGCTTAGTGT TTTCTTTCAG TGTTCTATCT TAAGTAGCCC TCTGCTGGAA 541 AAAGGACCCA GATTTTCTTG TTTTGT Predicted gene structure (within gDNA segment 1 to 254): Exon 1 156 254 ( 99 n); cDNA 35 123 ( 89 n); score: 0.768 MATCH 1006120C05YNX+ 6538984- 0.768 99 0.390 G PGS_1006120C05YNX+_6538984- (156 254) Alignment (genomic DNA sequence = upper lines): CGGAGAAGGA AGGCCTGTCC TTCCTCGAGA CATCTGCCCC TGGAGGGGGG CAATAAACGT 215 |||||||||| |||||| ||| |||||||||| |||| | ||| | || | | | ||||| CGGAGAAGGA AGGCCTATCC TTCCTCGAGA CATCCG-CCC TCGA----AG CCCTTAACGT 89 CGAGAAGGCG TTCCACACCA CACCATCTTG AGCGAGATC 254 |||||||||| || || ||| || || | ||| ||| CGAGAAGGCG TTTCAGACC- GTCC-TC-T- -CCGACATC 123 hqPGS_1006120C05YNX+_6538984- (156 254) Total number of EST alignments reported: 4 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 254: PGL 1 (+ strand): 17 254 AGS-1 (17 82,148 254) SCR (e 0.758 d 0.000 a 0.000,e 0.768) Exon 1 17 82 ( 66 n); score: 0.758 Intron 1 83 147 ( 65 n); Pd: 0.000 Pa: 0.000 Exon 2 148 254 ( 107 n); score: 0.768 PGS (17 82,148 254) 4314896- PGS (156 254) 4314875- PGS (156 254) 4321044- PGS (156 254) 6538984- 3-phase translation of AGS-1 (+strand): . . . . . . 17 TGTTATGATGGTCGGTAACAAGTCGGACTTGAACCACCTTAGGTCGGTCCCCGAGGAAGA C Y D G R - Q V G L E P P - V G P R G R V M M V G N K S D L N H L R S V P E E D L - W S V T S R T - T T L G R S P R K . : . . . . . 77 CAGACA : NNNNNNGTCGGAGAAGGAAGGCCTGTCCTTCCTCGAGACATCTGCCCCTGGAGG Q T : X X V G E G R P V L P R D I C P W R R X : X X S E K E G L S F L E T S A P G G T D : X X X R R R K A C P S S R H L P L E . . . . . . 202 GGGGCAATAAACGTCGAGAAGGCGTTCCACACCACACCATCTTGAGCGAGATC G A I N V E K A F H T T P S - A R G Q - T S R R R S T P H H L E R D G G N K R R E G V P H H T I L S E I Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:40 2003 ________________________________________________________________________________ Sequence 20: 1006125G02YNX, from 1 to 910, both strands analyzed. ... started at: Mon Nov 10 17:48:40 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:40 2003 ________________________________________________________________________________ Sequence 21: 1006126B03YNX, from 1 to 790, both strands analyzed. ... started at: Mon Nov 10 17:48:40 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 15590230+) 1 GCCGATCGAG CACCGGTGGA ACCAGCACGG CCTCGGCGGC GACAATGTCC TGGGCAGCTG 61 CCGCGACCTG CACCCGGGGC CCGTGAGCCT GCTGCATTGG TCCGGGTCCG GCAAGCCGTG 121 GGCGCGGCTG GGCGCCGGGC GGCCGTGCCC GCTCGATGCG CTCTGGGCAC CCTTCGACCT 181 GTACGGCCCC GGCCCCGGCG GCGGCGCCGA GGAGTCCCCG TACAAATTCT GAGCTCCTGA 241 TTTCTTGCTC TCCATTTACC TACATGTTTT TTTATTCGCA AAAAACAGAC TATATGTTCT 301 CCATCCTTTT CTTCTTCTTC TTCTTCTTTT TTCCCCTCTG GGCTGTTGGA TTAAATGTTT 361 TGTGTTAGAT TGTTCATGTT CGTTCTCGGT GAAAAAAAAA AAAAAAAAAA AAAAAAACTC 421 GAGCCCGG Predicted gene structure (within gDNA segment 790 to 1): Exon 1 630 433 ( 198 n); cDNA 10 209 ( 200 n); score: 0.788 PPA cDNA 392 418 MATCH 1006126B03YNX- 15590230+ 0.788 198 0.463 C PGS_1006126B03YNX-_15590230+ (630 433) Alignment (genomic DNA sequence = upper lines): GCACCGGTGG AACCAGCACG GGCTCGGCGG CGACAACGTG GCGGGGCAG- TGCCGGGAGC 572 |||||||||| |||||||||| | |||||||| |||||| || | |||||| ||||| || | GCACCGGTGG AACCAGCACG GCCTCGGCGG CGACAATGT- CCTGGGCAGC TGCCGCGACC 68 TGCACCCCGG TCCGGTCAGC CTGCTGCACT GGAGCGGAAA GGGGAAGCCG TGGCTGCGGC 512 ||||||| || || || ||| |||||||| | || ||| || |||||| ||| ||||| TGCACCCGGG GCCCGTGAGC CTGCTGCATT GGTCCGGGTC CGGCAAGCCG TGGGCGCGGC 128 TGGACGCCGG CCGGCCGTGC CCGCTCGACG CGCTCTGGGC GCCCTACGAC C--TCCTTTC 454 ||| |||||| ||||||||| |||||||| | |||||||||| |||| |||| | | | | TGGGCGCCGG GCGGCCGTGC CCGCTCGATG CGCTCTGGGC ACCCTTCGAC CTGTACGGCC 188 CCCGCCGCGG CGCCCGGGAC G 433 || ||| ||| || | | | | | CCGGCCCCGG CGGCGGCGCC G 209 hqPGS_1006126B03YNX-_15590230+ (630 433) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 790: PGL 1 (- strand): 630 433 AGS-1 (630 433) SCR (e 0.788) Exon 1 630 433 ( 198 n); score: 0.788 PGS (630 433) 15590230+ 3-phase translation of AGS-1 (-strand): . . . . . . 630 GCACCGGTGGAACCAGCACGGGCTCGGCGGCGACAACGTGGCGGGGCAGTGCCGGGAGCT A P V E P A R A R R R Q R G G A V P G A H R W N Q H G L G G D N V A G Q C R E L T G G T S T G S A A T T W R G S A G S . . . . . . 570 GCACCCCGGTCCGGTCAGCCTGCTGCACTGGAGCGGAAAGGGGAAGCCGTGGCTGCGGCT A P R S G Q P A A L E R K G E A V A A A H P G P V S L L H W S G K G K P W L R L C T P V R S A C C T G A E R G S R G C G . . . . . . 510 GGACGCCGGCCGGCCGTGCCCGCTCGACGCGCTCTGGGCGCCCTACGACCTCCTTTCCCC G R R P A V P A R R A L G A L R P P F P D A G R P C P L D A L W A P Y D L L S P W T P A G R A R S T R S G R P T T S F P . . 450 GCCGCGGCGCCCGGGACG A A A P G T P R R P G R R G A R D Maximal non-overlapping open reading frames (>= 64 codons): >1006126B03YNX-_PGL-1_AGS-1_PPS_1 (630 433) (frame '1'; 198 bp, 66 residues) 1 APVEPARARR RQRGGAVPGA APRSGQPAAL ERKGEAVAAA GRRPAVPARR ALGALRPPFP 61 AAAPGT >1006126B03YNX-_PGL-1_AGS-1_PPS_3 (629 435) (frame '2'; 195 bp, 65 residues) 1 HRWNQHGLGG DNVAGQCREL HPGPVSLLHW SGKGKPWLRL DAGRPCPLDA LWAPYDLLSP 61 PRRPG >1006126B03YNX-_PGL-1_AGS-1_PPS_2 (628 434) (frame '0'; 195 bp, 65 residues) 1 TGGTSTGSAA TTWRGSAGSC TPVRSACCTG AERGSRGCGW TPAGRARSTR SGRPTTSFPR 61 RGARD 3-phase translation of AGS-1 (+strand): . . . . . . 433 CGTCCCGGGCGCCGCGGCGGGGAAAGGAGGTCGTAGGGCGCCCAGAGCGCGTCGAGCGGG R P G R R G G E R R S - G A Q S A S S G V P G A A A G K G G R R A P R A R R A G S R A P R R G K E V V G R P E R V E R . . . . . . 493 CACGGCCGGCCGGCGTCCAGCCGCAGCCACGGCTTCCCCTTTCCGCTCCAGTGCAGCAGG H G R P A S S R S H G F P F P L Q C S R T A G R R P A A A T A S P F R S S A A G A R P A G V Q P Q P R L P L S A P V Q Q . . . . . . 553 CTGACCGGACCGGGGTGCAGCTCCCGGCACTGCCCCGCCACGTTGTCGCCGCCGAGCCCG L T G P G C S S R H C P A T L S P P S P - P D R G A A P G T A P P R C R R R A R A D R T G V Q L P A L P R H V V A A E P . . 613 TGCTGGTTCCACCGGTGC C W F H R C A G S T G V L V P P V Maximal non-overlapping open reading frames (>= 64 codons): >1006126B03YNX+_PGL-1_AGS-1_PPS_1 (435 629) (frame '0'; 195 bp, 65 residues) 1 SRAPRRGKEV VGRPERVERA RPAGVQPQPR LPLSAPVQQA DRTGVQLPAL PRHVVAAEPV 61 LVPPV ... finished at: Mon Nov 10 17:48:41 2003 ________________________________________________________________________________ Sequence 22: 1006140C05YNX, from 1 to 655, both strands analyzed. ... started at: Mon Nov 10 17:48:41 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:41 2003 ________________________________________________________________________________ Sequence 23: 1006156A07YNX, from 1 to 679, both strands analyzed. ... started at: Mon Nov 10 17:48:41 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:41 2003 ________________________________________________________________________________ Sequence 24: 1006158C10YNX, from 1 to 1104, both strands analyzed. ... started at: Mon Nov 10 17:48:41 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: 6653973-) 1 ACTTGCAAGC TTTAAATTGT GCCTCTTTCC TTGGGGCAAA GTTGCAAAAG ATGAATGTCA 61 GCATGAATGT CTATAGCTCT TGTCAAATAA CATTAAAAGA TTTTTCNCTG CAAGTTGGAT 121 CTCAAGAATC TGGATGCCTC CTTCCAAGTA TGCCCTCTGA TGCATCCTTC GACAGCACTT 181 CTGGGATTAG CTTCACATGC GATCTGAATG ACAACATCGC AGCCCCATGG CCATCTTCCA 241 TGCAAGCACC ATCTTCATCG TGCAACAAGT CTGTCAATAT CCCAGAGCGA CCTGCTGCGA 301 CATCGGCACA AAGTGGTGTG AACCACAAGA ACCTAAAGCT AAGACTGCTT GCCTCTTTGG 361 TCTCCCTTCT TCTGGTGCTC TTGGTACAAG TTTAGCAAGG TCCAGTTGCC CTATTATCGC 421 GATGATTCGT TCAGGAGAGC TAACTGGAAG TCAGTGAAGC GCTGAGTTTT TTGCGATCTC 481 GCGGTCGCAT CGAAGTGTAG TAGGTTTCAC GTGTATTTTA TTTTATTTTA TTTTTTGAAT 541 CTCCTGGTAG CAATTAGTGT AGTTTGTTGT AAGGAATATA TGTATAAT Predicted gene structure (within gDNA segment 1104 to 1): Exon 1 494 237 ( 258 n); cDNA 332 588 ( 257 n); score: 0.992 MATCH 1006158C10YNX- 6653973- 0.992 258 0.439 C PGS_1006158C10YNX-_6653973- (494 237) Alignment (genomic DNA sequence = upper lines): CCTAAAGCTA AGACTGCTTG CCTCTTTGGT CTCCCTTCTT CTGGTGCTCT TGGTACAAGT 435 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTAAAGCTA AGACTGCTTG CCTCTTTGGT CTCCCTTCTT CTGGTGCTCT TGGTACAAGT 391 TTAGCAAGGT CCAGTGTGCC CTATTATCGC GATGATTCGT TCAGGAGAGC TAACTGGAAG 375 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGCAAGGT CCAGT-TGCC CTATTATCGC GATGATTCGT TCAGGAGAGC TAACTGGAAG 450 TCAGTGAAGC GCTGAGTTTT TTGCGATCTC GCGGTCGCAT CGAAGTGTAG TAGGTTTCAC 315 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTGAAGC GCTGAGTTTT TTGCGATCTC GCGGTCGCAT CGAAGTGTAG TAGGTTTCAC 510 GTGTATTTTA TTTTATTTTA TTTTTTGAAT CTCCTGGTAG CAATTAGTGT AGTTTGCTGT 255 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| GTGTATTTTA TTTTATTTTA TTTTTTGAAT CTCCTGGTAG CAATTAGTGT AGTTTGTTGT 570 AAGGAATATA TGTATAAT 237 |||||||||| |||||||| AAGGAATATA TGTATAAT 588 hqPGS_1006158C10YNX-_6653973- (494 237) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 1104: PGL 1 (- strand): 494 237 AGS-1 (494 237) SCR (e 0.992) Exon 1 494 237 ( 258 n); score: 0.992 PGS (494 237) 6653973- 3-phase translation of AGS-1 (-strand): . . . . . . 494 CCTAAAGCTAAGACTGCTTGCCTCTTTGGTCTCCCTTCTTCTGGTGCTCTTGGTACAAGT P K A K T A C L F G L P S S G A L G T S L K L R L L A S L V S L L L V L L V Q V - S - D C L P L W S P F F W C S W Y K . . . . . . 434 TTAGCAAGGTCCAGTGTGCCCTATTATCGCGATGATTCGTTCAGGAGAGCTAACTGGAAG L A R S S V P Y Y R D D S F R R A N W K - Q G P V C P I I A M I R S G E L T G S F S K V Q C A L L S R - F V Q E S - L E . . . . . . 374 TCAGTGAAGCGCTGAGTTTTTTGCGATCTCGCGGTCGCATCGAAGTGTAGTAGGTTTCAC S V K R - V F C D L A V A S K C S R F H Q - S A E F F A I S R S H R S V V G F T V S E A L S F L R S R G R I E V - - V S . . . . . . 314 GTGTATTTTATTTTATTTTATTTTTTGAATCTCCTGGTAGCAATTAGTGTAGTTTGCTGT V Y F I L F Y F L N L L V A I S V V C C C I L F Y F I F - I S W - Q L V - F A V R V F Y F I L F F E S P G S N - C S L L . . 254 AAGGAATATATGTATAAT K E Y M Y N R N I C I - G I Y V - Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 237 ATTATACATATATTCCTTACAGCAAACTACACTAATTGCTACCAGGAGATTCAAAAAATA I I H I F L T A N Y T N C Y Q E I Q K I L Y I Y S L Q Q T T L I A T R R F K K - Y T Y I P Y S K L H - L L P G D S K N . . . . . . 297 AAATAAAATAAAATACACGTGAAACCTACTACACTTCGATGCGACCGCGAGATCGCAAAA K - N K I H V K P T T L R C D R E I A K N K I K Y T - N L L H F D A T A R S Q K K I K - N T R E T Y Y T S M R P R D R K . . . . . . 357 AACTCAGCGCTTCACTGACTTCCAGTTAGCTCTCCTGAACGAATCATCGCGATAATAGGG N S A L H - L P V S S P E R I I A I I G T Q R F T D F Q L A L L N E S S R - - G K L S A S L T S S - L S - T N H R D N R . . . . . . 417 CACACTGGACCTTGCTAAACTTGTACCAAGAGCACCAGAAGAAGGGAGACCAAAGAGGCA H T G P C - T C T K S T R R R E T K E A T L D L A K L V P R A P E E G R P K R Q A H W T L L N L Y Q E H Q K K G D Q R G . . 477 AGCAGTCTTAGCTTTAGG S S L S F R A V L A L K Q S - L - Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:42 2003 ________________________________________________________________________________ Sequence 25: 1006160D10YNX, from 1 to 757, both strands analyzed. ... started at: Mon Nov 10 17:48:42 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:42 2003 ________________________________________________________________________________ Sequence 26: 1006160F11YNX, from 1 to 555, both strands analyzed. ... started at: Mon Nov 10 17:48:42 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:42 2003 ________________________________________________________________________________ Sequence 27: 1006161B02YNX, from 1 to 502, both strands analyzed. ... started at: Mon Nov 10 17:48:42 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:42 2003 ________________________________________________________________________________ Sequence 28: 1006165D11YNX, from 1 to 295, both strands analyzed. ... started at: Mon Nov 10 17:48:42 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 2 +strand (File: 8665310+) 1 TATGGATGGC AATGTAATGT TTACAAACAT ATGAAAGAAT ATGATCACAC AAATCTATCT 61 GTTTCACGAT CTCGCATTCT CACACAGAAC TTCTATATCT TTGCATTCCC CCAGGTTCGG 121 TACCCTCTCT CTCTCTCAGT CTCTCTCTCC TAGCGGGTGT TTTTTTATTA TTTCAACAGA 181 AGATTATACT AGCAAACATG GATTACAACA GTCAAATCAG ACTACCGAGA CAAAGCTGCT 241 CACCTGACCT GGCCAAATCT GGTTCTGGTC CTCATAAACC CTCCTCTCGT GACCGGATCA 301 GACTCCTTGG CACTGCAGTT CCAGTAAGCC CCCACC Predicted gene structure (within gDNA segment 295 to 1): Exon 1 295 180 ( 116 n); cDNA 140 255 ( 116 n); score: 0.957 Intron 1 179 106 ( 74 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0.96) Exon 2 105 26 ( 80 n); cDNA 256 336 ( 81 n); score: 0.975 MATCH 1006165D11YNX- 8665310+ 0.964 196 0.664 G PGS_1006165D11YNX-_8665310+ (295 180,105 26) Alignment (genomic DNA sequence = upper lines): TCTCTCTCTC CTAGCGGGAG GTGTTCCATT ATTTCAACAG AAGATTATAC TAGCAAACAT 236 |||||||||| |||||||| | | || ||| |||||||||| |||||||||| |||||||||| TCTCTCTCTC CTAGCGGGTG TTTTTTTATT ATTTCAACAG AAGATTATAC TAGCAAACAT 199 GGATTACAAC AGTCAAATCA GACTACCGAG ACAAAGCTGC TCACCTGACC TGGCCAATCG 176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGATTACAAC AGTCAAATCA GACTACCGAG ACAAAGCTGC TCACCTGACC TGGCCA.... 255 ACGATAGATT GCCATTATGA NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 116 .......... .......... .......... .......... .......... .......... 255 NNNNNNNNNN AATCTGGTTC TGGTCCT-AT AAACCCTCCT CTCGTGACCG GATCAGACTC 57 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| .......... AATCTGGTTC TGGTCCTCAT AAACCCTCCT CTCGTGACCG GATCAGACTC 305 CTTGGCACTG CAGTTCCAGT AAGCCCCCAC C 26 |||||||||| |||||||||| |||||||||| | CTTGGCACTG CAGTTCCAGT AAGCCCCCAC C 336 hqPGS_1006165D11YNX-_8665310+ (295 180,105 26) ******************************************************************************** EST sequence 1 -strand (File: 9028585-) 1 TTTTTTTTTT TTTTTTTTTT TCAAAAGAAT GACACTGAAG CTACAAAAAA TACCATCCTA 61 GAATATGGAT GGCAATGTAA TGTTTACAAA CATATGAAAG AATATGATCA CACAAATCTA 121 TCTGGTTTCA CGATCTCGCA TTCTCACACA GACTTCTATA TCTTTGCATT CCCCCAGGTT 181 CGGTACCCTC TCTCTCTCTC AGTCTCTCTC TCCTAGCGGG AGGTGTTCCA TTATTTCAAC 241 AGAAGATTAT ACTAGCAAAC ATGGATTACA ACAGTCAAAT CAGACTACCG AGACAAAGCT 301 GCTCACCTGA CCTGGCCAAA TCTGGTTCTG GTCCTCATAA ACCCTCCTCT CGTGACCGGA 361 TCAGACTCCT TGGCACTGCA GTTCCAGTAA GCCCCCA Predicted gene structure (within gDNA segment 295 to 1): Exon 1 295 180 ( 116 n); cDNA 203 318 ( 116 n); score: 1.000 Intron 1 179 106 ( 74 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0.96) Exon 2 105 28 ( 78 n); cDNA 319 397 ( 79 n); score: 0.974 PPA cDNA 21 1 MATCH 1006165D11YNX- 9028585- 0.990 194 0.658 G PGS_1006165D11YNX-_9028585- (295 180,105 28) Alignment (genomic DNA sequence = upper lines): TCTCTCTCTC CTAGCGGGAG GTGTTCCATT ATTTCAACAG AAGATTATAC TAGCAAACAT 236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCTCTCTC CTAGCGGGAG GTGTTCCATT ATTTCAACAG AAGATTATAC TAGCAAACAT 262 GGATTACAAC AGTCAAATCA GACTACCGAG ACAAAGCTGC TCACCTGACC TGGCCAATCG 176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGATTACAAC AGTCAAATCA GACTACCGAG ACAAAGCTGC TCACCTGACC TGGCCA.... 318 ACGATAGATT GCCATTATGA NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 116 .......... .......... .......... .......... .......... .......... 318 NNNNNNNNNN AATCTGGTTC TGGTCCT-AT AAACCCTCCT CTCGTGACCG GATCAGACTC 57 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| .......... AATCTGGTTC TGGTCCTCAT AAACCCTCCT CTCGTGACCG GATCAGACTC 368 CTTGGCACTG CAGTTCCAGT AAGCCCCCA 28 |||||||||| |||||||||| ||||||||| CTTGGCACTG CAGTTCCAGT AAGCCCCCA 397 hqPGS_1006165D11YNX-_9028585- (295 180,105 28) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 295: PGL 1 (- strand): 295 26 AGS-1 (295 180,105 26) SCR (e 1.000 d 0.000 a 0.000,e 0.975) Exon 1 295 180 ( 116 n); score: 1.000 Intron 1 179 106 ( 74 n); Pd: 0.000 Pa: 0.000 Exon 2 105 26 ( 80 n); score: 0.975 PGS (295 180,105 26) 8665310+ PGS (295 180,105 28) 9028585- 3-phase translation of AGS-1 (-strand): . . . . . . 295 TCTCTCTCTCCTAGCGGGAGGTGTTCCATTATTTCAACAGAAGATTATACTAGCAAACAT S L S P S G R C S I I S T E D Y T S K H L S L L A G G V P L F Q Q K I I L A N M S L S - R E V F H Y F N R R L Y - Q T . . . . . . : 235 GGATTACAACAGTCAAATCAGACTACCGAGACAAAGCTGCTCACCTGACCTGGCCA : AATC G L Q Q S N Q T T E T K L L T - P G Q : I D Y N S Q I R L P R Q S C S P D L A : K S W I T T V K S D Y R D K A A H L T W P : N . . . . . . 101 TGGTTCTGGTCCTATAAACCCTCCTCTCGTGACCGGATCAGACTCCTTGGCACTGCAGTT W F W S Y K P S S R D R I R L L G T A V G S G P I N P P L V T G S D S L A L Q F L V L V L - T L L S - P D Q T P W H C S . . 41 CCAGTAAGCCCCCACC P V S P H Q - A P T S S K P P Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:43 2003 ________________________________________________________________________________ Sequence 29: 1006166F10YNX, from 1 to 820, both strands analyzed. ... started at: Mon Nov 10 17:48:43 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 6538824-) 1 CTTGGAGATG GCAGCAGGGC AAGAGCAAGC TGCAGAGCGC GGAAGGGGCC AGTCTGTTCA 61 CGCCGTTCGG CGGCGGGCCG CGGCTGTGCC CGGGCTACGA GCTCGCCCGG GTGGTGGTTT 121 CCGTCTTCCT CCACCACCTC GTCACGCGCT TTAGCTGGGA GGAAGCCGAG GAGGACAGGA 181 TTGTCTTCTT CCCCACCATC CGGACCCTCA AGGGATACCC CATCATCCTA CGGCGGCGAC 241 CGGATTGCGA TGATCTCTGA CCTCATGGCT AGGTTCTCCC CCCTTATCTT CTTCGGATCA 301 AGGCTGAAGG CTAAGCATTA GATAGAGTAA GGTGGATGTC GTCGTGGCTA GTAGGTGCAT 361 GGTGGTTTCT GCCACTCACT CACTCACTCA CTCACTCTGT TGTCTGTTTG TTCCTGTTCC 421 TCTCTGTTTT CTCTTGCTCT GTAACCTGGA CCTGGTACGA GTCAGCAGCC AGCAGCAAAC 481 TCGCTTTTTG TTTGTA Predicted gene structure (within gDNA segment 1 to 820): Exon 1 96 232 ( 137 n); cDNA 18 154 ( 137 n); score: 0.993 Intron 1 233 426 ( 194 n); Pd: 0.486 (s: 0.98), Pa: 0.841 (s: 0.98) Exon 2 427 764 ( 338 n); cDNA 155 496 ( 342 n); score: 0.944 MATCH 1006166F10YNX+ 6538824- 0.958 475 0.958 C PGS_1006166F10YNX+_6538824- (96 232,427 764) Alignment (genomic DNA sequence = upper lines): GGCAAGAGCA AGCTGCAGAG CGCGGAAGGG GCCAGTCTGT TCACGCCGTT CGGCGGCGGG 155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAAGAGCA AGCTGCAGAG CGCGGAAGGG GCCAGTCTGT TCACGCCGTT CGGCGGCGGG 77 CCGCGGCTGT GCCCGGGCTA CGAGCTCGCC CGGGTGGTGG TTTCCGTCTT CCTCCGCCAC 215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| CCGCGGCTGT GCCCGGGCTA CGAGCTCGCC CGGGTGGTGG TTTCCGTCTT CCTCCACCAC 137 CTCGTCACGC GCTTTAGGTG AGCCGTCCTT CTCTTTATTC TCTCCCGCCG GCGAGANNNN 275 |||||||||| ||||||| CTCGTCACGC GCTTTAG... .......... .......... .......... .......... 154 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNCCCG CCGGCTGCTC 335 .......... .......... .......... .......... .......... .......... 154 TTGAGGCGGC TCTGTGTGTG TGTGTGCTCG GAAGTCGGAA CGATGCTATG CCGCTCGCTC 395 .......... .......... .......... .......... .......... .......... 154 TGATTGGATT GGATTCTTGA CCAACAAACA GCTGGGAGGA AGCCGAGGAG GACAGGATTG 455 ||||||||| |||||||||| |||||||||| .......... .......... .......... .CTGGGAGGA AGCCGAGGAG GACAGGATTG 183 TCTTCTTCCC CACCACCCGG ACCCTCAAGG GATACCCCAT CATCCTACGG CGGCGACCGG 515 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTTCCC CACCATCCGG ACCCTCAAGG GATACCCCAT CATCCTACGG CGGCGACCGG 243 ATTGCGATGA TCTCTGACCT CATGGCTAGG TTCTCCCCCC TTATCTTCTT CGGATCAAGG 575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCGATGA TCTCTGACCT CATGGCTAGG TTCTCCCCCC TTATCTTCTT CGGATCAAGG 303 CTGAAGGCTA AGCATTAGGT AGAGTAAAGG GGATGTCG-- G-GGCTAGTA GGTGCATGGG 632 |||||||||| |||||||| | ||||||| | |||||||| | |||||||| ||||||||| CTGAAGGCTA AGCATTAGAT AGAGTAAGGT GGATGTCGTC GTGGCTAGTA GGTGCATGGT 363 GGTTTCTGCC ACT--CTCAC TCACTCACTC ACTCTGTTGT CTGTTTGTTC CTGTTCCTCT 690 |||||||||| ||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTCTGCC ACTCACTCAC TCACTCACTC ACTCTGTTGT CTGTTTGTTC CTGTTCCTCT 423 CTGTTTTCTT CTTGCTCTGT AACCTGGACC TGGTACGAGT CAGCAGCCAG CAGCAAACTC 750 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTTTC-T CTTGCTCTGT AACCTGGACC TGGTACGAGT CAGCAGCCAG CAGCAAACTC 482 GCGTTTTGCC TGTA 764 || ||||| |||| GCTTTTTGTT TGTA 496 hqPGS_1006166F10YNX+_6538824- (96 232,427 764) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 820: PGL 1 (+ strand): 96 764 AGS-1 (96 232,427 764) SCR (e 0.993 d 0.486 a 0.841,e 0.944) Exon 1 96 232 ( 137 n); score: 0.993 Intron 1 233 426 ( 194 n); Pd: 0.486 Pa: 0.841 Exon 2 427 764 ( 338 n); score: 0.944 PGS (96 232,427 764) 6538824- 3-phase translation of AGS-1 (+strand): . . . . . . 96 GGCAAGAGCAAGCTGCAGAGCGCGGAAGGGGCCAGTCTGTTCACGCCGTTCGGCGGCGGG G K S K L Q S A E G A S L F T P F G G G A R A S C R A R K G P V C S R R S A A G Q E Q A A E R G R G Q S V H A V R R R . . . . . . 156 CCGCGGCTGTGCCCGGGCTACGAGCTCGCCCGGGTGGTGGTTTCCGTCTTCCTCCGCCAC P R L C P G Y E L A R V V V S V F L R H R G C A R A T S S P G W W F P S S S A T A A A V P G L R A R P G G G F R L P P P . . : . . . . 216 CTCGTCACGCGCTTTAG : CTGGGAGGAAGCCGAGGAGGACAGGATTGTCTTCTTCCCCACC L V T R F S : W E E A E E D R I V F F P T S S R A L : A G R K P R R T G L S S S P P P R H A L - : L G G S R G G Q D C L L P H . . . . . . 470 ACCCGGACCCTCAAGGGATACCCCATCATCCTACGGCGGCGACCGGATTGCGATGATCTC T R T L K G Y P I I L R R R P D C D D L P G P S R D T P S S Y G G D R I A M I S H P D P Q G I P H H P T A A T G L R - S . . . . . . 530 TGACCTCATGGCTAGGTTCTCCCCCCTTATCTTCTTCGGATCAAGGCTGAAGGCTAAGCA - P H G - V L P P Y L L R I K A E G - A D L M A R F S P L I F F G S R L K A K H L T S W L G S P P L S S S D Q G - R L S . . . . . . 590 TTAGGTAGAGTAAAGGGGATGTCGGGGCTAGTAGGTGCATGGGGGTTTCTGCCACTCTCA L G R V K G M S G L V G A W G F L P L S - V E - R G C R G - - V H G G F C H S H I R - S K G D V G A S R C M G V S A T L . . . . . . 650 CTCACTCACTCACTCTGTTGTCTGTTTGTTCCTGTTCCTCTCTGTTTTCTTCTTGCTCTG L T H S L C C L F V P V P L C F L L A L S L T H S V V C L F L F L S V F F L L C T H S L T L L S V C S C S S L F S S C S . . . . . . 710 TAACCTGGACCTGGTACGAGTCAGCAGCCAGCAGCAAACTCGCGTTTTGCCTGTA - P G P G T S Q Q P A A N S R F A C N L D L V R V S S Q Q Q T R V L P V V T W T W Y E S A A S S K L A F C L Maximal non-overlapping open reading frames (>= 64 codons): >1006166F10YNX+_PGL-1_AGS-1_PPS_1 (97 232,427 593) (frame '2'; 300 bp, 100 residues) 1 ARASCRARKG PVCSRRSAAG RGCARATSSP GWWFPSSSAT SSRALAGRKP RRTGLSSSPP 61 PGPSRDTPSS YGGDRIAMIS DLMARFSPLI FFGSRLKAKH - ... finished at: Mon Nov 10 17:48:43 2003 ________________________________________________________________________________ Sequence 30: 1006169C12YNX, from 1 to 440, both strands analyzed. ... started at: Mon Nov 10 17:48:43 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:44 2003 ________________________________________________________________________________ Sequence 31: 1006170E02YNX, from 1 to 777, both strands analyzed. ... started at: Mon Nov 10 17:48:44 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:44 2003 ________________________________________________________________________________ Sequence 32: 1006170E08YNX, from 1 to 891, both strands analyzed. ... started at: Mon Nov 10 17:48:44 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 440767+) 1 NGCGAGGACG AGGCCGCCCC GCCTCCGAGA TACAGCGGTC GCATCGAGCT CGCGCCAGAG 61 GTTTACAGGA TGGACAAGAT CAAGGCGGAG ATGAAGAACG GCGTGCTCAA GGTGGTCGTG 121 CCGAAGGTGA AGGAGCAGCA GCGCAAGGAC GTGTTCCAAG TCAACGTCGA GTAGATGTTT 181 CCAAATAGAA GCAAGTNCCG GTACGGGATG GAGGATTGGA GGGGCACTGC CAAACTAGGA 241 TTCCTCTCTC TCAATCTGAT CTGGATTCTG GAATCANATT TCTCTTCTTT CATTTTTCTC 301 GTCTATCTTC TATCAGTATG AAATAAGCAA CGTCGGTTCA AGTTTTCG Predicted gene structure (within gDNA segment 891 to 1): Exon 1 617 295 ( 323 n); cDNA 2 316 ( 315 n); score: 0.969 Intron 1 294 213 ( 82 n); Pd: 0.000 (s: 0.96), Pa: 0.962 (s: 0) Exon 2 212 182 ( 31 n); cDNA 317 348 ( 32 n); score: 0.903 MATCH 1006170E08YNX- 440767+ 0.969 354 1.017 C PGS_1006170E08YNX-_440767+ (617 295,212 182) Alignment (genomic DNA sequence = upper lines): GCGAGGACGA GGCCGCCCCG CCTCCGAGAT ACAGCGGTCG CATCGAGCTC GCGCCAGAGG 558 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGAGGACGA GGCCGCCCCG CCTCCGAGAT ACAGCGGTCG CATCGAGCTC GCGCCAGAGG 61 TTTACAGGAT GGACAAGATC AAGGCGGAGA TGAAGAACGG CGTGCTCAAG GTGGTCGTGC 498 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACAGGAT GGACAAGATC AAGGCGGAGA TGAAGAACGG CGTGCTCAAG GTGGTCGTGC 121 CGAAGGTGAA GGAGCAGCAG CGCAAGGACG TGTTCCAAGT CAACGTCGAG TAGATGTTTC 438 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAGGTGAA GGAGCAGCAG CGCAAGGACG TGTTCCAAGT CAACGTCGAG TAGATGTTTC 181 CAAATAGAAG CAAGTGCCGG TACGGGATGG AGGATTGGAG CCTGGAGGGG CACTGCCAAA 378 |||||||||| ||||| |||| |||||||||| |||| | |||||||| |||||||||| CAAATAGAAG CAAGTNCCGG TACGGGATGG AGGA-T---- --TGGAGGGG CACTGCCAAA 234 CTAGGATTCC TCTCTCTCAA TCTGATCTGG ATTCTGGAAT CAGATTTCTC TTCTTTCATT 318 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| CTAGGATTCC TCTCTCTCAA TCTGATCTGG ATTCTGGAAT CANATTTCTC TTCTTTCATT 294 TTTCTCGTCT ATCTTCTATC GAGATANNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 258 |||||||||| |||||||||| || TTTCTCGTCT ATCTTCTATC -AG....... .......... .......... .......... 316 NNNNNNNNNN NNNNNNCATA ATGTCAATTA TCTCTCTTCT ATCAGTATGA AATAAGCAAC 198 ||||| |||||||||| .......... .......... .......... .......... .....TATGA AATAAGCAAC 331 GTCGCTTC-A GTTTTCG 182 |||| ||| | ||||||| GTCGGTTCAA GTTTTCG 348 hqPGS_1006170E08YNX-_440767+ (617 295,212 182) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 891: PGL 1 (- strand): 617 182 AGS-1 (617 295,212 182) SCR (e 0.969 d 0.000 a 0.962,e 0.903) Exon 1 617 295 ( 323 n); score: 0.969 Intron 1 294 213 ( 82 n); Pd: 0.000 Pa: 0.962 Exon 2 212 182 ( 31 n); score: 0.903 PGS (617 295,212 182) 440767+ 3-phase translation of AGS-1 (-strand): . . . . . . 617 GCGAGGACGAGGCCGCCCCGCCTCCGAGATACAGCGGTCGCATCGAGCTCGCGCCAGAGG A R T R P P R L R D T A V A S S S R Q R R G R G R P A S E I Q R S H R A R A R G E D E A A P P P R Y S G R I E L A P E . . . . . . 557 TTTACAGGATGGACAAGATCAAGGCGGAGATGAAGAACGGCGTGCTCAAGGTGGTCGTGC F T G W T R S R R R - R T A C S R W S C L Q D G Q D Q G G D E E R R A Q G G R A V Y R M D K I K A E M K N G V L K V V V . . . . . . 497 CGAAGGTGAAGGAGCAGCAGCGCAAGGACGTGTTCCAAGTCAACGTCGAGTAGATGTTTC R R - R S S S A R T C S K S T S S R C F E G E G A A A Q G R V P S Q R R V D V S P K V K E Q Q R K D V F Q V N V E - M F . . . . . . 437 CAAATAGAAGCAAGTGCCGGTACGGGATGGAGGATTGGAGCCTGGAGGGGCACTGCCAAA Q I E A S A G T G W R I G A W R G T A K K - K Q V P V R D G G L E P G G A L P N P N R S K C R Y G M E D W S L E G H C Q . . . . . . 377 CTAGGATTCCTCTCTCTCAATCTGATCTGGATTCTGGAATCAGATTTCTCTTCTTTCATT L G F L S L N L I W I L E S D F S S F I - D S S L S I - S G F W N Q I S L L S F T R I P L S Q S D L D S G I R F L F F H . . . : . . . 317 TTTCTCGTCTATCTTCTATCGAG : TATGAAATAAGCAACGTCGCTTCAGTTTTCG F L V Y L L S S : M K - A T S L Q F S F S S I F Y R : V - N K Q R R F S F F S R L S S I E : Y E I S N V A S V F Maximal non-overlapping open reading frames (>= 64 codons): >1006170E08YNX-_PGL-1_AGS-1_PPS_1 (488 295,212 203) (frame '1'; 201 bp, 67 residues) 1 RSSSARTCSK STSSRCFQIE ASAGTGWRIG AWRGTAKLGF LSLNLIWILE SDFSSFIFLV 61 YLLSSMK- ... finished at: Mon Nov 10 17:48:45 2003 ________________________________________________________________________________ Sequence 33: 1006173H04YNX, from 1 to 944, both strands analyzed. ... started at: Mon Nov 10 17:48:45 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: 440640-) 1 CTCTTACTCC GGAGAGGCTG ATTGACCTTG ACCGGCGTTG TACGGGTTCT GGAAGTACGT 61 GAGCAACCTG GAGAGGCGCG AGACCCGCCG CTACATCGAG ATGTTCTACG CCCTGAAGTA 121 CCGTAGCCTG GCAAGCCAGG TTCCGCTGTC CTTCGATTAG TACGGGGAAA GAAGAAGAAG 181 AAGAAGCCCA GGCCGGAGAA CCATCGCCTG CATTTCGATC TGTTTCACCG CAATTCGCAT 241 TGTTAGTCGT GTATTGGAGT TATGTGTACT TGGTTTCCAA GAACTTTGGT TCCTTGTTTT 301 TTTTTCTTTC TTGTTTGAGC GTTTTTGGGC AGCGCTGGCC TGGTTCCTAG TATGGTGAGA 361 ATTGGCTGCA CCTTTTGCTT CGAAT Predicted gene structure (within gDNA segment 777 to 1): Exon 1 313 191 ( 123 n); cDNA 5 130 ( 126 n); score: 0.943 Intron 1 190 72 ( 119 n); Pd: 1.000 (s: 1.00), Pa: 0.151 (s: 0.86) Exon 2 71 1 ( 71 n); cDNA 131 195 ( 65 n); score: 0.901 MATCH 1006173H04YNX- 440640- 0.928 194 0.504 C PGS_1006173H04YNX-_440640- (313 191,71 1) Alignment (genomic DNA sequence = upper lines): TACTCCG-AG AGGCTGAT-G ACCCTGACCG GCGT-GTACG GGTTCTGGAA GTACGTGAGC 257 ||||||| || |||||||| | ||| |||||| |||| ||||| |||||||||| |||||||||| TACTCCGGAG AGGCTGATTG ACCTTGACCG GCGTTGTACG GGTTCTGGAA GTACGTGAGC 64 AACCTGGAGA GGCGCGAGAC CCGCCGCTAC ATCGAGATGT TCTACGCCCT GAAGTACCGT 197 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTGGAGA GGCGCGAGAC CCGCCGCTAC ATCGAGATGT TCTACGCCCT GAAGTACCGT 124 AGCCTGGTAA GCCGTTTGAT GCCTGCCTCT GCCTCTGGCT GCCAGAGAGG ATCACGTGTT 137 |||||| AGCCTG.... .......... .......... .......... .......... .......... 130 CGTTCCCATT CTAGCAGGCT TAAACGAGTG GATGAACTAC TGACGCATCT GTTTCTGGAA 77 .......... .......... .......... .......... .......... .......... 130 TCCAGGCAAG CCAGGGTCCG CTGTCCTTCG ATTAGTACGG GGAAAGAAGG AGAAGAAGAA 17 ||||| ||||| |||| |||||||||| |||||||| | || ||| |||||||||| .....GCAAG CCAGGTTCCG CTGTCCTTCG ATTAGTAC-G GG---GAA-- AGAAGAAGAA 179 GAAGAAGCCC AGGCCG 1 |||||||||| |||||| GAAGAAGCCC AGGCCG 195 hqPGS_1006173H04YNX-_440640- (313 191,71 1) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 944: PGL 1 (- strand): 313 1 AGS-1 (313 191,71 1) SCR (e 0.943 d 1.000 a 0.151,e 0.901) Exon 1 313 191 ( 123 n); score: 0.943 Intron 1 190 72 ( 119 n); Pd: 1.000 Pa: 0.151 Exon 2 71 1 ( 71 n); score: 0.901 PGS (313 191,71 1) 440640- 3-phase translation of AGS-1 (-strand): . . . . . . 313 TACTCCGAGAGGCTGATGACCCTGACCGGCGTGTACGGGTTCTGGAAGTACGTGAGCAAC Y S E R L M T L T G V Y G F W K Y V S N T P R G - - P - P A C T G S G S T - A T L R E A D D P D R R V R V L E V R E Q . . . . . . 253 CTGGAGAGGCGCGAGACCCGCCGCTACATCGAGATGTTCTACGCCCTGAAGTACCGTAGC L E R R E T R R Y I E M F Y A L K Y R S W R G A R P A A T S R C S T P - S T V A P G E A R D P P L H R D V L R P E V P - . : . . . . . 193 CTG : GCAAGCCAGGGTCCGCTGTCCTTCGATTAGTACGGGGAAAGAAGGAGAAGAAGAAGA L : A S Q G P L S F D - Y G E R R R R R R W : Q A R V R C P S I S T G K E G E E E E P : G K P G S A V L R L V R G K K E K K K . . 14 AGAAGCCCAGGCCG R S P G E A Q A K K P R P Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:45 2003 ________________________________________________________________________________ Sequence 34: 1006174A01YNX, from 1 to 751, both strands analyzed. ... started at: Mon Nov 10 17:48:45 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:46 2003 ________________________________________________________________________________ Sequence 35: 1006175E10YNX, from 1 to 577, both strands analyzed. ... started at: Mon Nov 10 17:48:46 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:46 2003 ________________________________________________________________________________ Sequence 36: 1006177B07YNX, from 1 to 326, both strands analyzed. ... started at: Mon Nov 10 17:48:46 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 1 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 7217071-) 1 GGCTAGAACT TTGGAGATGA ATAATGTCCA GTGTGGTGTC TGGCATGGCC GAGGTGATTC 61 CATTTGTTTA GGGAGCANCG GTGCAGGAAC CAAGGCTTTC GCTGCCCTGA ACAAGGCCTC 121 TCTCGTGCCT ATAAAGTCCC CGGGGATGTG TGGCATGGAT AGATCGTCAA GCGCAGCCGA 181 CGAGCAGCAG CCGCTTGTCC CACCGGACCA ACTGGAGCAG GTTTAGGTAT TCTCTGTCGC 241 CACGACCTCT GCACTTTCCT AGAAGGGCTT GGACAGCGCC GACGGAAAAA AAATCGTTCT 301 CTGCCGGATT ATTAGGCGCC TGCATCCATT GGTCCCGAAA ACTGGACTTT GCAACTACCG 361 TACATGGGTG ATGGGCGCAG TCGACCTGCT GCTGCTGCTG TTGTAAAACT CAGTGATAGA 421 TTTTCACGTG CAGTCGAATT GTTTAGGTCG AAGACTGTAT CTTCAGAATG TCCC Predicted gene structure (within gDNA segment 326 to 1): Exon 1 323 157 ( 167 n); cDNA 279 433 ( 155 n); score: 0.892 Intron 1 156 89 ( 68 n); Pd: 0.000 (s: 0.90), Pa: 0.919 (s: 0) Exon 2 88 51 ( 38 n); cDNA 434 472 ( 39 n); score: 0.921 MATCH 1006177B07YNX- 7217071- 0.892 205 0.629 G PGS_1006177B07YNX-_7217071- (323 157,88 51) Alignment (genomic DNA sequence = upper lines): CCGACGGAGA AAAAAAATCG TCCTCTGCCG GATTATTAGG CGCCTGCATC TGCATCCATT 264 ||||| | || |||||||||| | |||||||| |||||||||| |||||||||| ||| | CCGAC-G-GA AAAAAAATCG TTCTCTGCCG GATTATTAGG CGCCTGCATC --CAT---T- 330 GGTCCCGAGA ACTGGACTTT GCAGCTACCG TACATGGGTG ATGGGCGCAG TCGACCTGCT 204 |||||||| | |||||||||| ||| |||||| |||||||||| |||||||||| |||| | || GGTCCCGAAA ACTGGACTTT GCAACTACCG TACATGGGTG ATGGGCGCAG TCGA-C--CT 387 GCTGGCTGCT GCTGTTGTAA AATTCAGTGA TAGATTTTCT CTTGCAGTCN NNNNNNNNNN 144 ||| |||||| |||||||||| || ||||||| ||||||||| | ||||| GCT-GCTGCT GCTGTTGTAA AACTCAGTGA TAGATTTTCA CGTGCAG... .......... 433 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNA ATCATCTCCT TGCAGTCGAA 84 ||||| .......... .......... .......... .......... .......... .....TCGAA 438 -TGTTTAGGT CGAAGACTGT ATCTTCATAA TGTC 51 ||||||||| |||||||||| ||||||| || |||| TTGTTTAGGT CGAAGACTGT ATCTTCAGAA TGTC 472 hqPGS_1006177B07YNX-_7217071- (323 157,88 51) ******************************************************************************** EST sequence 2 +strand (File: 7217072+) 1 TGGACGATTG TGTTCTCCAT CTCATATGTC CTTGCTGTAC GCTGTGCCAG GAGGCTAGAA 61 CTTTGGAGAT GAATAATGTC CAGTGTGGTG TCTGGCATGG CCGAGGTGAT ACCATTTGTT 121 TAGGGAGCAA CGGTGCAGGA AACAAGGCTT TCGCTGCCCT GAACAAGGCC TCTCTCGTGC 181 CTATAAAGTC CCCGGGGATG TGTGGCATGG ATAGATCGTC AAGCGCAGCC GACGAGCAGC 241 AGCCGCTTGT CCCACCGGAC CAACTGGAGC AGGTTTAGGT ATTCTCTGTC GCCACGACCT 301 CTGCACTTTC CTAGAAGGGC TTGGACAGCG CCGACGGAAA AAAAATCGTT CTCTGCCGGA 361 TTATTAGGCG CCTGCATCCA TTGGTCCCGA GAACTGGACT TTGCAACTAC CGTACATGGG 421 TGATGGGCGC AGTCGACCTG CTGCTGCTGC TGTTGTAAAA CTCAGTGATA GATTTTCACG 481 TGCAGTCGAA TTGT Predicted gene structure (within gDNA segment 326 to 1): Exon 1 323 155 ( 169 n); cDNA 331 487 ( 157 n); score: 0.899 MATCH 1006177B07YNX- 7217072+ 0.899 169 0.518 G PGS_1006177B07YNX-_7217072+ (323 155) Alignment (genomic DNA sequence = upper lines): CCGACGGAGA AAAAAAATCG TCCTCTGCCG GATTATTAGG CGCCTGCATC TGCATCCATT 264 ||||| | || |||||||||| | |||||||| |||||||||| |||||||||| ||| | CCGAC-G-GA AAAAAAATCG TTCTCTGCCG GATTATTAGG CGCCTGCATC --CAT---T- 382 GGTCCCGAGA ACTGGACTTT GCAGCTACCG TACATGGGTG ATGGGCGCAG TCGACCTGCT 204 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||| | || GGTCCCGAGA ACTGGACTTT GCAACTACCG TACATGGGTG ATGGGCGCAG TCGA-C--CT 439 GCTGGCTGCT GCTGTTGTAA AATTCAGTGA TAGATTTTCT CTTGCAGTC 155 ||| |||||| |||||||||| || ||||||| ||||||||| | ||||||| GCT-GCTGCT GCTGTTGTAA AACTCAGTGA TAGATTTTCA CGTGCAGTC 487 hqPGS_1006177B07YNX-_7217072+ (323 155) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 326: PGL 1 (- strand): 323 51 AGS-1 (323 157,88 51) SCR (e 0.899 d 0.000 a 0.919,e 0.921) Exon 1 323 157 ( 167 n); score: 0.899 Intron 1 156 89 ( 68 n); Pd: 0.000 Pa: 0.919 Exon 2 88 51 ( 38 n); score: 0.921 PGS (323 157,88 51) 7217071- PGS (323 155) 7217072+ 3-phase translation of AGS-1 (-strand): . . . . . . 323 CCGACGGAGAAAAAAAATCGTCCTCTGCCGGATTATTAGGCGCCTGCATCTGCATCCATT P T E K K N R P L P D Y - A P A S A S I R R R K K I V L C R I I R R L H L H P L D G E K K S S S A G L L G A C I C I H . . . . . . 263 GGTCCCGAGAACTGGACTTTGCAGCTACCGTACATGGGTGATGGGCGCAGTCGACCTGCT G P E N W T L Q L P Y M G D G R S R P A V P R T G L C S Y R T W V M G A V D L L W S R E L D F A A T V H G - W A Q S T C . . . . . : . 203 GCTGGCTGCTGCTGTTGTAAAATTCAGTGATAGATTTTCTCTTGCAG : TCGAATGTTTAGG A G C C C C K I Q - - I F S C S : R M F R L A A A V V K F S D R F S L A : V E C L G C W L L L L - N S V I D F L L Q : S N V - . . . 75 TCGAAGACTGTATCTTCATAATGTC S K T V S S - C R R L Y L H N V V E D C I F I M Maximal non-overlapping open reading frames (>= 64 codons): >1006177B07YNX-_PGL-1_AGS-1_PPS_1 (322 157,88 51) (frame '2'; 204 bp, 68 residues) 1 RRRKKIVLCR IIRRLHLHPL VPRTGLCSYR TWVMGAVDLL LAAAVVKFSD RFSLAVECLG 61 RRLYLHNV ... finished at: Mon Nov 10 17:48:46 2003 ________________________________________________________________________________ Sequence 37: 1006179A05YNX, from 1 to 573, both strands analyzed. ... started at: Mon Nov 10 17:48:46 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 1546844+) 1 GGACAGGCAG GCAGCGAGTG CAACNNNGNN NNNTCANNNN TGGGCTCCTT CTTCTCGACC 61 TTAGTGACGC CCCCTCCGGC CGCCGACGAC CCGAACTGCG CCGTGGTGGC CGCGCACTCC 121 AAGGCCACTA CGACGAGCAG TGGGCGCCCA CAAGAGCAGC AGCAAGCTGA TGGTGATCGA 181 CTTCTCGGCG TCCTGGTGCG GGCCCTGCNT TCATCGAGCC GGCCTTCAAG GANCTGGCCT 241 CCCGCTTCAC CGATGCCATC TTCGTCAAGG TTGACGTCGA CGAGCT Predicted gene structure (within gDNA segment 573 to 1): Exon 1 228 67 ( 162 n); cDNA 10 169 ( 160 n); score: 0.858 MATCH 1006179A05YNX- 1546844+ 0.858 162 0.566 C PGS_1006179A05YNX-_1546844+ (228 67) Alignment (genomic DNA sequence = upper lines): GGAAGGGAGG GCAACCGAGA GCGATCGGCG ATGGGCTCCT TCCTCTCGAG CTTAGTCACG 169 || || ||| ||||| | || ||||||||| || |||||| |||||| ||| GGCAGCGAGT GCAACNNNGN NNNNTCANNN NTGGGCTCCT TCTTCTCGAC CTTAGTGACG 69 CCCCCTCCGG CCGCCGACGA CCCCAACTGC GCCGTGGTGG CCGCCCACTC CAAGGCCACC 109 |||||||||| |||||||||| ||| |||||| |||||||||| |||| ||||| |||||||| | CCCCCTCCGG CCGCCGACGA CCCGAACTGC GCCGTGGTGG CCGCGCACTC CAAGGCCA-C 128 TACGACGAGC AGTGGGCGGC CCACAAGAGC AGCAGCAAGC TG 67 |||||||||| ||||||| || |||||||||| |||||||||| || TACGACGAGC AGTGGGC-GC CCACAAGAGC AGCAGCAAGC TG 169 hqPGS_1006179A05YNX-_1546844+ (228 67) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 573: PGL 1 (- strand): 228 67 AGS-1 (228 67) SCR (e 0.858) Exon 1 228 67 ( 162 n); score: 0.858 PGS (228 67) 1546844+ 3-phase translation of AGS-1 (-strand): . . . . . . 228 GGAAGGGAGGGCAACCGAGAGCGATCGGCGATGGGCTCCTTCCTCTCGAGCTTAGTCACG G R E G N R E R S A M G S F L S S L V T E G R A T E S D R R W A P S S R A - S R K G G Q P R A I G D G L L P L E L S H . . . . . . 168 CCCCCTCCGGCCGCCGACGACCCCAACTGCGCCGTGGTGGCCGCCCACTCCAAGGCCACC P P P A A D D P N C A V V A A H S K A T P L R P P T T P T A P W W P P T P R P P A P S G R R R P Q L R R G G R P L Q G H . . . . . 108 TACGACGAGCAGTGGGCGGCCCACAAGAGCAGCAGCAAGCTG Y D E Q W A A H K S S S K L T T S S G R P T R A A A S L R R A V G G P Q E Q Q Q A Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 67 CAGCTTGCTGCTGCTCTTGTGGGCCGCCCACTGCTCGTCGTAGGTGGCCTTGGAGTGGGC Q L A A A L V G R P L L V V G G L G V G S L L L L L W A A H C S S - V A L E W A A C C C S C G P P T A R R R W P W S G . . . . . . 127 GGCCACCACGGCGCAGTTGGGGTCGTCGGCGGCCGGAGGGGGCGTGACTAAGCTCGAGAG G H H G A V G V V G G R R G R D - A R E A T T A Q L G S S A A G G G V T K L E R R P P R R S W G R R R P E G A - L S S R . . . . . 187 GAAGGAGCCCATCGCCGATCGCTCTCGGTTGCCCTCCCTTCC E G A H R R S L S V A L P S K E P I A D R S R L P S L G R S P S P I A L G C P P F Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:47 2003 ________________________________________________________________________________ Sequence 38: 1007003F01YNX, from 1 to 680, both strands analyzed. ... started at: Mon Nov 10 17:48:47 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:47 2003 ________________________________________________________________________________ Sequence 39: 1007013D10YNX, from 1 to 804, both strands analyzed. ... started at: Mon Nov 10 17:48:47 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 12971836+) 1 CGCTCCGTGT GGCTCATGAA GTGCCCCCCG GTCGTCTCCC GCGCCTGGCA GGCCTGCCTC 61 CGCCTCCGCC TCTTCCTCCG ACGCCGCTAA CGCCAACCCC GTTGTCGCCA AGGTCGTCCT 121 TTCCCTCGAC CTGCTCCGCC CAGAAGAACG CCCCGAAGAG CGCCCGGAAG A Predicted gene structure (within gDNA segment 311 to 804): Exon 1 611 780 ( 170 n); cDNA 1 171 ( 171 n); score: 0.941 MATCH 1007013D10YNX+ 12971836+ 0.941 170 0.994 C PGS_1007013D10YNX+_12971836+ (611 780) Alignment (genomic DNA sequence = upper lines): CGCTCCGTGT GGCTCATGAA GTGCCCCCCG GTCGTCTCCC GCGCCTGGCA GGCC-GCCTC 669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| CGCTCCGTGT GGCTCATGAA GTGCCCCCCG GTCGTCTCCC GCGCCTGGCA GGCCTGCCTC 60 CGCCTCCGCC TCTTCCTCCG ACGCATCTCA CGCACGCGAC GTTGTCGCCA AGGTCGTCCT 729 |||||||||| |||||||||| |||| || | ||| | | |||||||||| |||||||||| CGCCTCCGCC TCTTCCTCCG ACGCCGCTAA CGCCAACCCC GTTGTCGCCA AGGTCGTCCT 120 TTCCCTCGAC CTGCTCCGCC CAGAAGAACG CCCCGAAGAG CGCCCGGAAG A 780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TTCCCTCGAC CTGCTCCGCC CAGAAGAACG CCCCGAAGAG CGCCCGGAAG A 171 hqPGS_1007013D10YNX+_12971836+ (611 780) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 804: PGL 1 (+ strand): 611 780 AGS-1 (611 780) SCR (e 0.941) Exon 1 611 780 ( 170 n); score: 0.941 PGS (611 780) 12971836+ 3-phase translation of AGS-1 (+strand): . . . . . . 611 CGCTCCGTGTGGCTCATGAAGTGCCCCCCGGTCGTCTCCCGCGCCTGGCAGGCCGCCTCC R S V W L M K C P P V V S R A W Q A A S A P C G S - S A P R S S P A P G R P P P L R V A H E V P P G R L P R L A G R L . . . . . . 671 GCCTCCGCCTCTTCCTCCGACGCATCTCACGCACGCGACGTTGTCGCCAAGGTCGTCCTT A S A S S S D A S H A R D V V A K V V L P P P L P P T H L T H A T L S P R S S F R L R L F L R R I S R T R R C R Q G R P . . . . . 731 TCCCTCGACCTGCTCCGCCCAGAAGAACGCCCCGAAGAGCGCCCGGAAGA S L D L L R P E E R P E E R P E P S T C S A Q K N A P K S A R K F P R P A P P R R T P R R A P G R Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 780 TCTTCCGGGCGCTCTTCGGGGCGTTCTTCTGGGCGGAGCAGGTCGAGGGAAAGGACGACC S S G R S S G R S S G R S R S R E R T T L P G A L R G V L L G G A G R G K G R P F R A L F G A F F W A E Q V E G K D D . . . . . . 720 TTGGCGACAACGTCGCGTGCGTGAGATGCGTCGGAGGAAGAGGCGGAGGCGGAGGCGGCC L A T T S R A - D A S E E E A E A E A A W R Q R R V R E M R R R K R R R R R R P L G D N V A C V R C V G G R G G G G G G . . . . . 660 TGCCAGGCGCGGGAGACGACCGGGGGGCACTTCATGAGCCACACGGAGCG C Q A R E T T G G H F M S H T E A R R G R R P G G T S - A T R S L P G A G D D R G A L H E P H G A Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:47 2003 ________________________________________________________________________________ Sequence 40: 1007021B01YNX, from 1 to 678, both strands analyzed. ... started at: Mon Nov 10 17:48:47 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:47 2003 ________________________________________________________________________________ Sequence 41: 1007033B07YNX, from 1 to 1102, both strands analyzed. ... started at: Mon Nov 10 17:48:47 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:47 2003 ________________________________________________________________________________ Sequence 42: 1007034D07YNX, from 1 to 609, both strands analyzed. ... started at: Mon Nov 10 17:48:47 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:48 2003 ________________________________________________________________________________ Sequence 43: 1007041C05YNX, from 1 to 570, both strands analyzed. ... started at: Mon Nov 10 17:48:48 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 6973543-) 1 CCACGTAGGA CACGACGTGA ACCCGAACAG AAAAGCAGGT TTTCCTAGCG ACCTATGCCG 61 GCGCCATGCC GTGCTGTTGC CGTGGCAGTG GCACCAGCGC GGCGCACTTC AGGTGACAGG 121 CTGACGCAGC GAGCTAGATC GGCCGCCGTC CGGCGCTGGA CTCACTCGAC GGACTTCTCG 181 ACGGCGGCCT CGGGAGCAGG GGCCGCCGCT TCCTCCTCGG TCGCTGCGAC CTCAGGAGTG 241 GCAGCAACAG CAGGCGCTGC CTCCTCCTCC TCGTTAGCCT CCACAGCCGC CGCCTCCTTG 301 GTCTCGGCGG CTATCTCCGG CTCAGCAGCC TCGACCGGGG CAGCAGCAGC CTCCGTCTCT 361 GCTCCCGGCG CGGCGGCCTC CGTCTCTGCT TCCNTGGCCT CCGTCTCTGC TGCCGGCGCG 421 GCGGCCTCCG GTTCTGCTTC CNTGGCCTCC GTGCCTGCTG CCGGCGCGGT GGCACCCGGT 481 TCTGCTTCCT TGGGCTCTGC CTCGGTCGGC TCAGCAACGG CCTCGGCCTC CTTGGTCTCA 541 GTCTCGGCCT CCACCGGCAC CGGCTCCTTA GCGACGACGA CCTCGGTCTC CACCGCCGGA 601 GCAGCGGTCT CCGTCGACGC GGCCGCG Predicted gene structure (within gDNA segment 1 to 570): Exon 1 142 155 ( 14 n); cDNA 196 209 ( 14 n); score: 0.857 Intron 1 156 224 ( 69 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 1.00) Exon 2 225 569 ( 345 n); cDNA 210 539 ( 330 n); score: 0.803 MATCH 1007041C05YNX+ 6973543- 0.803 359 0.630 G PGS_1007041C05YNX+_6973543- (142 155,225 569) Alignment (genomic DNA sequence = upper lines): GCGGGGCCCG CCGCGCCACG TAGGACACGA CGTGAACCCG AACACAAAAG CAGGTTTTTC 201 || ||| ||| |||| GCAGGGGCCG CCGC...... .......... .......... .......... .......... 209 CTANNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNGGCAGCA 261 ||||||| .......... .......... ...TTCCTCC TCGGTCGCTG CGACCTCAGG AGTGGCAGCA 246 ACAGCAGGCG CTGCCTCCTC CTCCTCCTCG TTAGCCTCCA CAGCCGCCAC CTCTTTGGTC 321 |||||||||| ||| |||| |||||||||| |||||||||| |||||||| | ||| |||||| ACAGCAGGCG CTG---CCTC CTCCTCCTCG TTAGCCTCCA CAGCCGCCGC CTCCTTGGTC 303 TCGGCGGCTA TCTCCGGCTC AGCAGCCTCG ACCGGGGCAG CAGCAGCCTC CGTCTCTGCT 381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGCGGCTA TCTCCGGCTC AGCAGCCTCG ACCGGGGCAG CAGCAGCCTC CGTCTCTGCT 363 GCCGGCAAGG CGGCCTCCGG CTCTGCTTCC TTGGCCTCCG TCTCTGCTGC CGGCAAGGCG 441 ||||| || ||||||||| |||||||||| ||||||||| |||||||||| |||| |||| CCCGGCGCGG CGGCCTCCGT CTCTGCTTCC NTGGCCTCCG TCTCTGCTGC CGGCGCGGCG 423 GCCTCGGGCT CTGCCTCGGT CGGCTCAGCC TCAGCTACGG CCTCGGCCTC GGCCTCAGCC 501 ||||| || | |||| || | ||| | || || | | | ||| | | || || || GCCTCCGGTT CTGCTTCCNT -GGC-C-TCC GTGCCTGCTG -C-CGG-CGC GGTGGCA-CC 476 TCGACCTCGA CCTCCTTGGA CTCAGACTCG GCCTCGGC-C GGCACCGGCT CCTTAGCGAC 560 || || | ||||||| ||| | |||| | ||||| | ||| ||| ||| || | -CG-GTTCTG CTTCCTTGGG CTCTGCCTCG G--TCGGCTC AGCAACGG-- CCTCGGCCTC 530 GACGACCTC 569 | ||| CTTGGTCTC 539 hqPGS_1007041C05YNX+_6973543- (225 569) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 570: PGL 1 (+ strand): 225 569 AGS-1 (225 569) SCR (e 0.803) Exon 1 225 569 ( 345 n); score: 0.803 PGS (225 569) 6973543- 3-phase translation of AGS-1 (+strand): . . . . . . 225 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGCAACAGCAGGCGCTGCCTCCTCCTC X X X X X X X X X X G S N S R R C L L L X X X X X X X X X X A A T A G A A S S S X X X X X X X X X X Q Q Q Q A L P P P . . . . . . 285 CTCCTCGTTAGCCTCCACAGCCGCCACCTCTTTGGTCTCGGCGGCTATCTCCGGCTCAGC L L V S L H S R H L F G L G G Y L R L S S S L A S T A A T S L V S A A I S G S A P P R - P P Q P P P L W S R R L S P A Q . . . . . . 345 AGCCTCGACCGGGGCAGCAGCAGCCTCCGTCTCTGCTGCCGGCAAGGCGGCCTCCGGCTC S L D R G S S S L R L C C R Q G G L R L A S T G A A A A S V S A A G K A A S G S Q P R P G Q Q Q P P S L L P A R R P P A . . . . . . 405 TGCTTCCTTGGCCTCCGTCTCTGCTGCCGGCAAGGCGGCCTCGGGCTCTGCCTCGGTCGG C F L G L R L C C R Q G G L G L C L G R A S L A S V S A A G K A A S G S A S V G L L P W P P S L L P A R R P R A L P R S . . . . . . 465 CTCAGCCTCAGCTACGGCCTCGGCCTCGGCCTCAGCCTCGACCTCGACCTCCTTGGACTC L S L S Y G L G L G L S L D L D L L G L S A S A T A S A S A S A S T S T S L D S A Q P Q L R P R P R P Q P R P R P P W T . . . . . 525 AGACTCGGCCTCGGCCGGCACCGGCTCCTTAGCGACGACGACCTC R L G L G R H R L L S D D D L D S A S A G T G S L A T T T Q T R P R P A P A P - R R R P Maximal non-overlapping open reading frames (>= 64 codons): >1007041C05YNX+_PGL-1_AGS-1_PPS_1 (225 569) (frame '1'; 345 bp, 115 residues) 1 XXXXXXXXXX GSNSRRCLLL LLVSLHSRHL FGLGGYLRLS SLDRGSSSLR LCCRQGGLRL 61 CFLGLRLCCR QGGLGLCLGR LSLSYGLGLG LSLDLDLLGL RLGLGRHRLL SDDDL >1007041C05YNX+_PGL-1_AGS-1_PPS_2 (226 567) (frame '2'; 342 bp, 114 residues) 1 XXXXXXXXXX AATAGAASSS SSLASTAATS LVSAAISGSA ASTGAAAASV SAAGKAASGS 61 ASLASVSAAG KAASGSASVG SASATASASA SASTSTSLDS DSASAGTGSL ATTT 3-phase translation of AGS-1 (-strand): . . . . . . 569 GAGGTCGTCGTCGCTAAGGAGCCGGTGCCGGCCGAGGCCGAGTCTGAGTCCAAGGAGGTC E V V V A K E P V P A E A E S E S K E V R S S S L R S R C R P R P S L S P R R S G R R R - G A G A G R G R V - V Q G G . . . . . . 509 GAGGTCGAGGCTGAGGCCGAGGCCGAGGCCGTAGCTGAGGCTGAGCCGACCGAGGCAGAG E V E A E A E A E A V A E A E P T E A E R S R L R P R P R P - L R L S R P R Q S R G R G - G R G R G R S - G - A D R G R . . . . . . 449 CCCGAGGCCGCCTTGCCGGCAGCAGAGACGGAGGCCAAGGAAGCAGAGCCGGAGGCCGCC P E A A L P A A E T E A K E A E P E A A P R P P C R Q Q R R R P R K Q S R R P P A R G R L A G S R D G G Q G S R A G G R . . . . . . 389 TTGCCGGCAGCAGAGACGGAGGCTGCTGCTGCCCCGGTCGAGGCTGCTGAGCCGGAGATA L P A A E T E A A A A P V E A A E P E I C R Q Q R R R L L L P R S R L L S R R - L A G S R D G G C C C P G R G C - A G D . . . . . . 329 GCCGCCGAGACCAAAGAGGTGGCGGCTGTGGAGGCTAACGAGGAGGAGGAGGAGGCAGCG A A E T K E V A A V E A N E E E E E A A P P R P K R W R L W R L T R R R R R Q R S R R D Q R G G G C G G - R G G G G G S . . . . . 269 CCTGCTGTTGCTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN P A V A A X X X X X X X X X X L L L L X X X X X X X X X X A C C C C X X X X X X X X X X Maximal non-overlapping open reading frames (>= 64 codons): >1007041C05YNX-_PGL-1_AGS-1_PPS_1 (569 225) (frame '1'; 345 bp, 115 residues) 1 EVVVAKEPVP AEAESESKEV EVEAEAEAEA VAEAEPTEAE PEAALPAAET EAKEAEPEAA 61 LPAAETEAAA APVEAAEPEI AAETKEVAAV EANEEEEEAA PAVAAXXXXX XXXXX ... finished at: Mon Nov 10 17:48:48 2003 ________________________________________________________________________________ Sequence 44: 1007041D03YNX, from 1 to 1064, both strands analyzed. ... started at: Mon Nov 10 17:48:48 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 5439466-) 1 CCTTGACCGC CCTGGGCCTC GAAACAGATG CCTGAGTCAT CACCAGGCTC GACATCCTTG 61 GCCTCGACAC CAGTTTCGTC AACCTCCTCC TCCTCGTTGT CCTCCAGGCC CAGGCCAGAT 121 GTCTCAGGCT TCGGGATCAT TTGGCTCAGG TCAGGAGCCT TGAACTGCTC TGCAGCTTGG 181 GTCTGCAGCT GGGAGCTGAG GTCCTCGATC TTCGCCTCGC CGAATATGAC TTAGGTGTCC 241 GAGTTTGGGC TCTTGAACAC ATCTGGCTTC GAGATGACAA AAAGCATATT CTTGCTTTTC 301 TTCACAGTGA CCCGGCTGAC ACCAGTGATG GGCTTCATGC CAAGCTTCAG CATGGCCTTG 361 CGGCTCTTCT TCTCACTCCT GCTTTGCTTC GACTTGCCAC TCCCATCCCC TTCTTGTCCA 421 TCCAGTTCAT CATCATCCTT GTCATCATCA TCGTCATCCT CATCATCCTC GTCATCCTCC 481 TCCACCGCAA CCTCTTCTGC CTCGGTCTTC TGCTCCTCGA GCTTCTGCTG CTCGATCTGG 541 GCGGCGAGCT CCTCCGCAGC CTGCGCCGTC A Predicted gene structure (within gDNA segment 1 to 504): Exon 1 134 204 ( 71 n); cDNA 501 571 ( 71 n); score: 1.000 MATCH 1007041D03YNX+ 5439466- 1.000 71 0.141 G PGS_1007041D03YNX+_5439466- (134 204) Alignment (genomic DNA sequence = upper lines): CTCGGTCTTC TGCTCCTCGA GCTTCTGCTG CTCGATCTGG GCGGCGAGCT CCTCCGCAGC 193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGGTCTTC TGCTCCTCGA GCTTCTGCTG CTCGATCTGG GCGGCGAGCT CCTCCGCAGC 560 CTGCGCCGTC A 204 |||||||||| | CTGCGCCGTC A 571 hqPGS_1007041D03YNX+_5439466- (134 204) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 1064: PGL 1 (+ strand): 134 204 AGS-1 (134 204) SCR (e 1.000) Exon 1 134 204 ( 71 n); score: 1.000 PGS (134 204) 5439466- 3-phase translation of AGS-1 (+strand): . . . . . . 134 CTCGGTCTTCTGCTCCTCGAGCTTCTGCTGCTCGATCTGGGCGGCGAGCTCCTCCGCAGC L G L L L L E L L L L D L G G E L L R S S V F C S S S F C C S I W A A S S S A A R S S A P R A S A A R S G R R A P P Q . . 194 CTGCGCCGTCA L R R C A V P A P S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 204 TGACGGCGCAGGCTGCGGAGGAGCTCGCCGCCCAGATCGAGCAGCAGAAGCTCGAGGAGC - R R R L R R S S P P R S S S R S S R S D G A G C G G A R R P D R A A E A R G A T A Q A A E E L A A Q I E Q Q K L E E . . 144 AGAAGACCGAG R R P E D R Q K T E Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:49 2003 ________________________________________________________________________________ Sequence 45: 1007048E08YNX, from 1 to 1225, both strands analyzed. ... started at: Mon Nov 10 17:48:49 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 6020296+) 1 GGGATTGGAA CTATGTATCA TTCTGAGCCA CTAATTCTAC ATCATGCCAA CGAAAACTCA 61 AGGCGTATGG TTGAGGGCCA AACATTTACA ATTGAACCTA TACTCACAAT GGAGAAAACA 121 GAGTGTGTTA CATGGGAAGA TGGATGGACG ACTGTCACTG CTGATGGTAG CTGGGCTGCG 181 CAGTTTGAGC ATACCATACT GGTGACTAGG GACGGTGCAG AAATACTGAC GAAAGGTTGA 241 GCTATTCTCC TGCCCGATAA TTCTTGTCAG AACTCTCAGC TATGGTTCCT GGCCCAAGTC 301 ATCCTGGGCA TGTCCGTTGC TCGTCGCAAT GCTCATTTCA GAGTTTTGAG ATCTGCTGCA 361 GGCCGACATA CGGGAAAGGT TTCCCCCATG TAGATGTAGC AGCAACTTGC AGGTGATAGG 421 TGAGGGCACA CACACACACA GACACGGCTG CATCTCTGTG ATTAACACAT TGCTGGTCTC 481 CTGCAGCCTG CTGCAGTGGT GTTGCTGGGG GATGTCGTGC CTTTGGATTC TAGAAGACAT 541 TCTGTGTATA AAACAGCACT GCTAACAGTT CAGTCTAGAA CTTAGAAGTA GAAAC Predicted gene structure (within gDNA segment 1 to 1225): Exon 1 118 163 ( 46 n); cDNA 1 46 ( 46 n); score: 1.000 Intron 1 164 751 ( 588 n); Pd: 0.320 (s: 1.00), Pa: 0.911 (s: 0.98) Exon 2 752 799 ( 48 n); cDNA 47 94 ( 48 n); score: 0.979 Intron 2 800 1020 ( 221 n); Pd: 0.960 (s: 0.98), Pa: 0.000 (s: 1.00) Exon 3 1021 1220 ( 200 n); cDNA 95 293 ( 199 n); score: 0.925 MATCH 1007048E08YNX+ 6020296+ 0.925 294 0.494 C PGS_1007048E08YNX+_6020296+ (118 163,752 799,1021 1220) Alignment (genomic DNA sequence = upper lines): GGGATTGGAA CTATGTATCA TTCTGAGCCA CTAATTCTAC ATCATGGTGG GTACCATTTT 177 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGGATTGGAA CTATGTATCA TTCTGAGCCA CTAATTCTAC ATCATG.... .......... 46 TGACATTTAA GCCTGCTTTA GTATTGGCAT TTTGTTTTAT CATACAATAA TAATTCATGG 237 .......... .......... .......... .......... .......... .......... 46 AGTGTGGCTT CTCGTATTGC TAGATTTACT GGTTTCGTGT TCAGATGTCC TAAATTTTCA 297 .......... .......... .......... .......... .......... .......... 46 ATTCCATCGC TTGCTAGGCA CATTGGCTTC TTTAGACTGA CAATATGTGG TACTAAACAT 357 .......... .......... .......... .......... .......... .......... 46 TTTAGCTACA TGTATGCTTA AATTATCACT GGCAAGATGG AAACGTCTTA TTTCCTTGCA 417 .......... .......... .......... .......... .......... .......... 46 GAACTGTCTA CGCTGTCATT ATAAGCCAGT TTATCTTGAT TTACACTGGT TAGACCATTG 477 .......... .......... .......... .......... .......... .......... 46 AAATCCAGGG ATCAATGAAA CCCCCATGAC CAATCCAGGT TTGAAAGCTG GCATGAACTT 537 .......... .......... .......... .......... .......... .......... 46 CTTGAGAACA AAATCAGTGG GATGTCTCTC TTGCCTAGTT GAGTTTTTTG GGGGGTCAGT 597 .......... .......... .......... .......... .......... .......... 46 TGCCATAATG TCCTGTTGAA ATCGAGATAA TTGCANNNNN NNNNNNNNNN NNNNNNNNNN 657 .......... .......... .......... .......... .......... .......... 46 NNNNNNNNNN NNNNNNNNNN NNNNNGCAAT TATCTCGTTG AAATCATGCT GGAATTTTAG 717 .......... .......... .......... .......... .......... .......... 46 TATACATGAG ATTAATGAAT TCTTGATTTT GTAGCCAACG AAAACTCAGG GCGTATGGTT 777 |||||| |||||||| | |||||||||| .......... .......... .......... ....CCAACG AAAACTCAAG GCGTATGGTT 72 GAGGGCCAAA CATTTACAAT TGGTATGTGC TTTCATTGTC CTTCTCGATT GTATGCTTGG 837 |||||||||| |||||||||| || GAGGGCCAAA CATTTACAAT TG........ .......... .......... .......... 94 ACTTCCAATT TCAGTTAATT GATTAATGCC CTTCAGAATA GTATGTGCTG GAGATTTGTA 897 .......... .......... .......... .......... .......... .......... 94 GTGGTTGCTC CTTGCATATT TCATATGGGC CAAGCTCCTG CTTATCATGT AGACATGAAG 957 .......... .......... .......... .......... .......... .......... 94 TCGTACACTT GTAAAAATAT TTCATATGGA CTTGAAATAT CTTGACCGAA TCCAATCCTG 1017 .......... .......... .......... .......... .......... .......... 94 CAGAACCTAT ACTCACAATG GAGAAAACAG AGTGTGTTAC ATGGGAAGAT GGATGGACGA 1077 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...AACCTAT ACTCACAATG GAGAAAACAG AGTGTGTTAC ATGGGAAGAT GGATGGACGA 151 CTGTCACTGC TGATGGTAGC TGGGCTGCGC AGTTTGAGCA TACCATACTG GTGACTAGGG 1137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCACTGC TGATGGTAGC TGGGCTGCGC AGTTTGAGCA TACCATACTG GTGACTAGGG 211 ACGGTGCAGA AATACTGACG AAAGGCTGAG CTATTCTCCT GCCCGATAAT TATGGGCAGA 1197 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| | | | |||| ACGGTGCAGA AATACTGACG AAAGGTTGAG CTATTCTCCT GCCCGATAAT TCTTGTCAGA 271 AGTGAGTCAT CCAT-TTTCC CAGC 1220 | | ||| | || |||| || ACT--CTCAG CTATGGTTCC TGGC 293 hqPGS_1007048E08YNX+_6020296+ (118 163,752 799,1021 1220) ******************************************************************************** EST sequence 2 +strand (File: 6020867+) 1 TTTTTGGGAT TGCCCCCTAT GTATCATTCT GAGCCACTAA TTCTACATCA TGCCAACGAA 61 AACTCAGGGC GTATGGTTGA GGGCCAAACA TTTACAATTG AACCTATACT CACAATGGAG 121 AAAACAGAGT GTGTTACATG GGAAGATGGA TGGACGACTG TCACTGCTGA TGGTAGCTGG 181 GCTGCGCAGT TTGAGCATAC CATACTGGTG ACTAGGGACG GTGCAGAAAT ACTGACGAAA 241 GTTTGAGCTA TTCTCCTGCC CGATAATTCT TGTCAGAACT CTCAGCTATG GTTCCTGTCC 301 CAAGTCATCC TGGTCATGTC CGTTGCTCGT CGCAATGCTC ATTTCAGAGT TTTGAGATCT 361 GCTGCAGGCC GACATACGGG AAAGGTTTCC CCCATGTAGA TGTAGCAGCA ACTTGCAGGT 421 GATAGGTGAG GGCACACACA CACACAGACA CGGCTGCATC TCTGTGATTA ACACATTGCT 481 GGTCTCCTGC AGCCTGCTGC AGTGGTGTTG CTGGGGGATG TCGTGCCTTT GGATTCTAGA 541 AGACATTCTG TATATAAAAC AGCACTGCTA ACAGTTCAGT CTAGAACTTA GAAGTAGAAA 601 C Predicted gene structure (within gDNA segment 1 to 1225): Exon 1 129 163 ( 35 n); cDNA 18 52 ( 35 n); score: 1.000 Intron 1 164 751 ( 588 n); Pd: 0.320 (s: 0), Pa: 0.911 (s: 1.00) Exon 2 752 799 ( 48 n); cDNA 53 100 ( 48 n); score: 1.000 Intron 2 800 1020 ( 221 n); Pd: 0.960 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 3 1021 1217 ( 197 n); cDNA 101 295 ( 195 n); score: 0.929 MATCH 1007048E08YNX+ 6020867+ 0.929 280 0.466 C PGS_1007048E08YNX+_6020867+ (129 163,752 799,1021 1217) Alignment (genomic DNA sequence = upper lines): TATGTATCAT TCTGAGCCAC TAATTCTACA TCATGGTGGG TACCATTTTT GACATTTAAG 188 |||||||||| |||||||||| |||||||||| ||||| TATGTATCAT TCTGAGCCAC TAATTCTACA TCATG..... .......... .......... 52 CCTGCTTTAG TATTGGCATT TTGTTTTATC ATACAATAAT AATTCATGGA GTGTGGCTTC 248 .......... .......... .......... .......... .......... .......... 52 TCGTATTGCT AGATTTACTG GTTTCGTGTT CAGATGTCCT AAATTTTCAA TTCCATCGCT 308 .......... .......... .......... .......... .......... .......... 52 TGCTAGGCAC ATTGGCTTCT TTAGACTGAC AATATGTGGT ACTAAACATT TTAGCTACAT 368 .......... .......... .......... .......... .......... .......... 52 GTATGCTTAA ATTATCACTG GCAAGATGGA AACGTCTTAT TTCCTTGCAG AACTGTCTAC 428 .......... .......... .......... .......... .......... .......... 52 GCTGTCATTA TAAGCCAGTT TATCTTGATT TACACTGGTT AGACCATTGA AATCCAGGGA 488 .......... .......... .......... .......... .......... .......... 52 TCAATGAAAC CCCCATGACC AATCCAGGTT TGAAAGCTGG CATGAACTTC TTGAGAACAA 548 .......... .......... .......... .......... .......... .......... 52 AATCAGTGGG ATGTCTCTCT TGCCTAGTTG AGTTTTTTGG GGGGTCAGTT GCCATAATGT 608 .......... .......... .......... .......... .......... .......... 52 CCTGTTGAAA TCGAGATAAT TGCANNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 668 .......... .......... .......... .......... .......... .......... 52 NNNNNNNNNN NNNNGCAATT ATCTCGTTGA AATCATGCTG GAATTTTAGT ATACATGAGA 728 .......... .......... .......... .......... .......... .......... 52 TTAATGAATT CTTGATTTTG TAGCCAACGA AAACTCAGGG CGTATGGTTG AGGGCCAAAC 788 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...CCAACGA AAACTCAGGG CGTATGGTTG AGGGCCAAAC 89 ATTTACAATT GGTATGTGCT TTCATTGTCC TTCTCGATTG TATGCTTGGA CTTCCAATTT 848 |||||||||| | ATTTACAATT G......... .......... .......... .......... .......... 100 CAGTTAATTG ATTAATGCCC TTCAGAATAG TATGTGCTGG AGATTTGTAG TGGTTGCTCC 908 .......... .......... .......... .......... .......... .......... 100 TTGCATATTT CATATGGGCC AAGCTCCTGC TTATCATGTA GACATGAAGT CGTACACTTG 968 .......... .......... .......... .......... .......... .......... 100 TAAAAATATT TCATATGGAC TTGAAATATC TTGACCGAAT CCAATCCTGC AGAACCTATA 1028 |||||||| .......... .......... .......... .......... .......... ..AACCTATA 108 CTCACAATGG AGAAAACAGA GTGTGTTACA TGGGAAGATG GATGGACGAC TGTCACTGCT 1088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCACAATGG AGAAAACAGA GTGTGTTACA TGGGAAGATG GATGGACGAC TGTCACTGCT 168 GATGGTAGCT GGGCTGCGCA GTTTGAGCAT ACCATACTGG TGACTAGGGA CGGTGCAGAA 1148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGTAGCT GGGCTGCGCA GTTTGAGCAT ACCATACTGG TGACTAGGGA CGGTGCAGAA 228 ATACTGACGA AAGGCTGAGC TATTCTCCTG CCCGATAATT ATGGGCAGAA GTGAGTCATC 1208 |||||||||| ||| ||||| |||||||||| |||||||||| | | ||||| | ||| | ATACTGACGA AAGTTTGAGC TATTCTCCTG CCCGATAATT CTTGTCAGAA CT--CTCAGC 286 CATTTTCCC 1217 || | || TATGGTTCC 295 hqPGS_1007048E08YNX+_6020867+ (129 163,752 799,1021 1217) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 1225: PGL 1 (+ strand): 118 1220 AGS-1 (118 163,752 799,1021 1220) SCR (e 1.000 d 0.320 a 0.911,e 1.000 d 0.960 a 0.000,e 0.929) Exon 1 118 163 ( 46 n); score: 1.000 Intron 1 164 751 ( 588 n); Pd: 0.320 Pa: 0.911 Exon 2 752 799 ( 48 n); score: 1.000 Intron 2 800 1020 ( 221 n); Pd: 0.960 Pa: 0.000 Exon 3 1021 1220 ( 200 n); score: 0.929 PGS (118 163,752 799,1021 1220) 6020296+ PGS (129 163,752 799,1021 1217) 6020867+ 3-phase translation of AGS-1 (+strand): . . . . . : . 118 GGGATTGGAACTATGTATCATTCTGAGCCACTAATTCTACATCATG : CCAACGAAAACTCA G I G T M Y H S E P L I L H H : A N E N S G L E L C I I L S H - F Y I M : P T K T Q D W N Y V S F - A T N S T S C : Q R K L . . . . : . . 766 GGGCGTATGGTTGAGGGCCAAACATTTACAATTG : AACCTATACTCACAATGGAGAAAACA G R M V E G Q T F T I : E P I L T M E K T G V W L R A K H L Q L : N L Y S Q W R K Q R A Y G - G P N I Y N - : T Y T H N G E N . . . . . . 1047 GAGTGTGTTACATGGGAAGATGGATGGACGACTGTCACTGCTGATGGTAGCTGGGCTGCG E C V T W E D G W T T V T A D G S W A A S V L H G K M D G R L S L L M V A G L R R V C Y M G R W M D D C H C - W - L G C . . . . . . 1107 CAGTTTGAGCATACCATACTGGTGACTAGGGACGGTGCAGAAATACTGACGAAAGGCTGA Q F E H T I L V T R D G A E I L T K G - S L S I P Y W - L G T V Q K Y - R K A E A V - A Y H T G D - G R C R N T D E R L . . . . . . 1167 GCTATTCTCCTGCCCGATAATTATGGGCAGAAGTGAGTCATCCATTTTCCCAGC A I L L P D N Y G Q K - V I H F P S L F S C P I I M G R S E S S I F P S Y S P A R - L W A E V S H P F S Q Maximal non-overlapping open reading frames (>= 64 codons): >1007048E08YNX+_PGL-1_AGS-1_PPS_1 (118 163,752 799,1021 1166) (frame '1'; 237 bp, 79 residues) 1 GIGTMYHSEP LILHHANENS GRMVEGQTFT IEPILTMEKT ECVTWEDGWT TVTADGSWAA 61 QFEHTILVTR DGAEILTKG- ... finished at: Mon Nov 10 17:48:50 2003 ________________________________________________________________________________ Sequence 46: 1007054G07YNX, from 1 to 1038, both strands analyzed. ... started at: Mon Nov 10 17:48:50 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:50 2003 ________________________________________________________________________________ Sequence 47: 1007055F04YNX, from 1 to 803, both strands analyzed. ... started at: Mon Nov 10 17:48:50 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:51 2003 ________________________________________________________________________________ Sequence 48: 1007058B07YNX, from 1 to 718, both strands analyzed. ... started at: Mon Nov 10 17:48:51 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 440691-) 1 CGGCGGGACG CCCTCGTACG TCTTGAGCCT CGCCAGAGCC GCCTCCCCCC TCTTGGTCTT 61 GTGCGGAATC ATCCCGCGGA TGGTGCGCCA CAGGATCTTG GCGGGGGCGC GGAAGTGGAT 121 GGGCCCGTGG GACGGCTTGG TGTTCATCCG CTTGCGGAGG AAGCGGAGGT ACTTCATCTT 181 CTGACGGACG AGGCCGCCCG ACATGCAGAT CTCCTCGCAG CGGACGACGA CCACCTTCTG 241 CCCATTGAGC AGCTCCTTGG CTATGATCGA GGAGAGACGG CCCAGCATGT GGTGGCGCGC 301 GTCCACCACN GATCTTCGCG CACACGCCCG AACCGGAGAC CATGGCGGCC TTACCTGTGA 361 GGCAGTGGCG GCGCAAGTGT TTGN Predicted gene structure (within gDNA segment 1 to 679): Exon 1 1 129 ( 129 n); cDNA 208 334 ( 127 n); score: 0.922 MATCH 1007058B07YNX+ 440691- 0.922 129 0.336 C PGS_1007058B07YNX+_440691- (1 129) Alignment (genomic DNA sequence = upper lines): GATCTCCTCG CAGCGCTCGG CCACCACCTT TTGCCCATTG AGCAGCTCCT TGGCTATGAT 60 |||||||||| ||||| || | |||||||| ||||||||| |||||||||| |||||||||| GATCTCCTCG CAGCGGACGA CGACCACCTT CTGCCCATTG AGCAGCTCCT TGGCTATGAT 267 CGAGGAGAGA CGGCCCAGCA TGTGGTGGCG CGCGTCCACC ACGATGCGCT TCGCGCACAC 120 |||||||||| |||||||||| |||||||||| |||||||||| || | || |||||||||| CGAGGAGAGA CGGCCCAGCA TGTGGTGGCG CGCGTCCACC AC--NGATCT TCGCGCACAC 325 GCCCGAACC 129 ||||||||| GCCCGAACC 334 hqPGS_1007058B07YNX+_440691- (1 129) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 718: PGL 1 (+ strand): 1 129 AGS-1 (1 129) SCR (e 0.922) Exon 1 1 129 ( 129 n); score: 0.922 PGS (1 129) 440691- 3-phase translation of AGS-1 (+strand): . . . . . . 1 GATCTCCTCGCAGCGCTCGGCCACCACCTTTTGCCCATTGAGCAGCTCCTTGGCTATGAT D L L A A L G H H L L P I E Q L L G Y D I S S Q R S A T T F C P L S S S L A M I S P R S A R P P P F A H - A A P W L - . . . . . . 61 CGAGGAGAGACGGCCCAGCATGTGGTGGCGCGCGTCCACCACGATGCGCTTCGCGCACAC R G E T A Q H V V A R V H H D A L R A H E E R R P S M W W R A S T T M R F A H T S R R D G P A C G G A R P P R C A S R T . 121 GCCCGAACC A R T P E R P N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 129 GGTTCGGGCGTGTGCGCGAAGCGCATCGTGGTGGACGCGCGCCACCACATGCTGGGCCGT G S G V C A K R I V V D A R H H M L G R V R A C A R S A S W W T R A T T C W A V F G R V R E A H R G G R A P P H A G P . . . . . . 69 CTCTCCTCGATCATAGCCAAGGAGCTGCTCAATGGGCAAAAGGTGGTGGCCGAGCGCTGC L S S I I A K E L L N G Q K V V A E R C S P R S - P R S C S M G K R W W P S A A S L L D H S Q G A A Q W A K G G G R A L . 9 GAGGAGATC E E I R R R G D Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:51 2003 ________________________________________________________________________________ Sequence 49: 1007059G12YNX, from 1 to 1030, both strands analyzed. ... started at: Mon Nov 10 17:48:51 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 7135978-) 1 TCGTTCCTCT TCTCGTACCT GGCGGACAGC GCGTCGATGG TGGAGTGGGG CGGGGAGGTG 61 GTGAACTCGC AGGCGGACGG CGTGCACACG TCGACGCAGA TGGGCAGCGG GCACTTCCCC 121 GAGGAAGGGT TCGGCAGGGC GAGCTACTTC AAGGGGGTGC AGGTGGTGGA CAGCAGCANC 181 ANCCTCGGGG CGCCCAGGGG CGGCCTGGGC ACCTTCACGG AGCAGTCCAG CTGCTACGAC 241 GTGCAGAGCG GCAGCANCGC CGACTGGGGC ACCTACTTCT ACTACGGCGG GCCCGGGAGG 301 AGCTCCAGCT GCCAGTAACT GGTGGGCTCT CTAGCTAGGT AGTGATGTGC GTGCTGCTGG 361 CTTCACCTTT GTGGTAGTTT CTTCTTCTTC TTCTTCTTCT CATTAGTCAG TAGTGCCGCC 421 GTGCCGGGAT GGCTTCTGAA GAGAAGCATG GCATGTGGTG GTGTGGTGTG GTGGTGCCCT 481 ACCCTACCCT TCCCTTGTGG TGTATCGGCC TGCC Predicted gene structure (within gDNA segment 1 to 1030): Exon 1 26 327 ( 302 n); cDNA 1 305 ( 305 n); score: 0.838 MATCH 1007059G12YNX+ 7135978- 0.838 302 0.588 C PGS_1007059G12YNX+_7135978- (26 327) Alignment (genomic DNA sequence = upper lines): TCGTTCCTCT TCTCGTACCT GGCGGACAGT GCCTCCATGA TCGAGTGGGG CGGCGAGGTG 85 |||||||||| |||||||||| ||||||||| || || ||| | |||||||| ||| |||||| TCGTTCCTCT TCTCGTACCT GGCGGACAGC GCGTCGATGG TGGAGTGGGG CGGGGAGGTG 60 GTGAACTCGG AGCCCGACGG CAGCCACACC AGCACGCAGA TGGGCAGCGG CCACTTCCCC 145 ||||||||| || | ||||| | ||||| ||||||| |||||||||| ||||||||| GTGAACTCGC AGGCGGACGG CGTGCACACG TCGACGCAGA TGGGCAGCGG GCACTTCCCC 120 GAGGAAGGGT TCGGCAAGGC CAGCTACTTC AGGAACGTCC AGGTGGTGGA CTCCACCAAC 205 |||||||||| |||||| ||| ||||||||| | | || | |||||||||| | || || | GAGGAAGGGT TCGGCAGGGC GAGCTACTTC AAGGGGGTGC AGGTGGTGGA CAGCAGCANC 180 AACCTCAAGC CGCCCAGGGG C-G--TCGGC ACCTTCCCCG AGCAGTCCAG CTGCTACGAC 262 | |||| | |||||||||| | | | ||| |||||| | | |||||||||| |||||||||| ANCCTCGGGG CGCCCAGGGG CGGCCTGGGC ACCTTCACGG AGCAGTCCAG CTGCTACGAC 240 GTGCAGGGCG GCAGCAACTC CGACTGGGGC ACCTACTTCT ACTGTGGCGG GCCCGGGAAG 322 |||||| ||| |||||| | | |||||||||| |||||||||| ||| ||||| |||||||| | GTGCAGAGCG GCAGCANCGC CGACTGGGGC ACCTACTTCT ACTACGGCGG GCCCGGGAGG 300 TACTC 327 ||| AGCTC 305 hqPGS_1007059G12YNX+_7135978- (26 327) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 1030: PGL 1 (+ strand): 26 327 AGS-1 (26 327) SCR (e 0.838) Exon 1 26 327 ( 302 n); score: 0.838 PGS (26 327) 7135978- 3-phase translation of AGS-1 (+strand): . . . . . . 26 TCGTTCCTCTTCTCGTACCTGGCGGACAGTGCCTCCATGATCGAGTGGGGCGGCGAGGTG S F L F S Y L A D S A S M I E W G G E V R S S S R T W R T V P P - S S G A A R W V P L L V P G G Q C L H D R V G R R G . . . . . . 86 GTGAACTCGGAGCCCGACGGCAGCCACACCAGCACGCAGATGGGCAGCGGCCACTTCCCC V N S E P D G S H T S T Q M G S G H F P - T R S P T A A T P A R R W A A A T S P G E L G A R R Q P H Q H A D G Q R P L P . . . . . . 146 GAGGAAGGGTTCGGCAAGGCCAGCTACTTCAGGAACGTCCAGGTGGTGGACTCCACCAAC E E G F G K A S Y F R N V Q V V D S T N R K G S A R P A T S G T S R W W T P P T R G R V R Q G Q L L Q E R P G G G L H Q . . . . . . 206 AACCTCAAGCCGCCCAGGGGCGTCGGCACCTTCCCCGAGCAGTCCAGCTGCTACGACGTG N L K P P R G V G T F P E Q S S C Y D V T S S R P G A S A P S P S S P A A T T C Q P Q A A Q G R R H L P R A V Q L L R R . . . . . . 266 CAGGGCGGCAGCAACTCCGACTGGGGCACCTACTTCTACTGTGGCGGGCCCGGGAAGTAC Q G G S N S D W G T Y F Y C G G P G K Y R A A A T P T G A P T S T V A G P G S T A G R Q Q L R L G H L L L L W R A R E V . 326 TC L Maximal non-overlapping open reading frames (>= 64 codons): >1007059G12YNX+_PGL-1_AGS-1_PPS_2 (26 325) (frame '1'; 300 bp, 100 residues) 1 SFLFSYLADS ASMIEWGGEV VNSEPDGSHT STQMGSGHFP EEGFGKASYF RNVQVVDSTN 61 NLKPPRGVGT FPEQSSCYDV QGGSNSDWGT YFYCGGPGKY >1007059G12YNX+_PGL-1_AGS-1_PPS_1 (28 327) (frame '0'; 300 bp, 100 residues) 1 VPLLVPGGQC LHDRVGRRGG ELGARRQPHQ HADGQRPLPR GRVRQGQLLQ ERPGGGLHQQ 61 PQAAQGRRHL PRAVQLLRRA GRQQLRLGHL LLLWRAREVL 3-phase translation of AGS-1 (-strand): . . . . . . 327 GAGTACTTCCCGGGCCCGCCACAGTAGAAGTAGGTGCCCCAGTCGGAGTTGCTGCCGCCC E Y F P G P P Q - K - V P Q S E L L P P S T S R A R H S R S R C P S R S C C R P V L P G P A T V E V G A P V G V A A A . . . . . . 267 TGCACGTCGTAGCAGCTGGACTGCTCGGGGAAGGTGCCGACGCCCCTGGGCGGCTTGAGG C T S - Q L D C S G K V P T P L G G L R A R R S S W T A R G R C R R P W A A - G L H V V A A G L L G E G A D A P G R L E . . . . . . 207 TTGTTGGTGGAGTCCACCACCTGGACGTTCCTGAAGTAGCTGGCCTTGCCGAACCCTTCC L L V E S T T W T F L K - L A L P N P S C W W S P P P G R S - S S W P C R T L P V V G G V H H L D V P E V A G L A E P F . . . . . . 147 TCGGGGAAGTGGCCGCTGCCCATCTGCGTGCTGGTGTGGCTGCCGTCGGGCTCCGAGTTC S G K W P L P I C V L V W L P S G S E F R G S G R C P S A C W C G C R R A P S S L G E V A A A H L R A G V A A V G L R V . . . . . . 87 ACCACCTCGCCGCCCCACTCGATCATGGAGGCACTGTCCGCCAGGTACGAGAAGAGGAAC T T S P P H S I M E A L S A R Y E K R N P P R R P T R S W R H C P P G T R R G T H H L A A P L D H G G T V R Q V R E E E . 27 GA R Maximal non-overlapping open reading frames (>= 64 codons): >1007059G12YNX-_PGL-1_AGS-1_PPS_1 (325 26) (frame '0'; 300 bp, 100 residues) 1 VLPGPATVEV GAPVGVAAAL HVVAAGLLGE GADAPGRLEV VGGVHHLDVP EVAGLAEPFL 61 GEVAAAHLRA GVAAVGLRVH HLAAPLDHGG TVRQVREEER ... finished at: Mon Nov 10 17:48:53 2003 ________________________________________________________________________________ Sequence 50: 1007063A10YNX, from 1 to 875, both strands analyzed. ... started at: Mon Nov 10 17:48:53 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:53 2003 ________________________________________________________________________________ Sequence 51: 1007065D09YNX, from 1 to 1198, both strands analyzed. ... started at: Mon Nov 10 17:48:53 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:53 2003 ________________________________________________________________________________ Sequence 52: 1007068H10YNX, from 1 to 1241, both strands analyzed. ... started at: Mon Nov 10 17:48:53 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:53 2003 ________________________________________________________________________________ Sequence 53: 1007069H10YNX, from 1 to 1042, both strands analyzed. ... started at: Mon Nov 10 17:48:53 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:54 2003 ________________________________________________________________________________ Sequence 54: 1007083D06YNX, from 1 to 881, both strands analyzed. ... started at: Mon Nov 10 17:48:54 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:54 2003 ________________________________________________________________________________ Sequence 55: 1007085C02YNX, from 1 to 916, both strands analyzed. ... started at: Mon Nov 10 17:48:54 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: 12046896-) 1 TATATAAGTT ATCGTAGTAT ACTAGTATTA TATATTCCTG TTGCAACGCA TGGGCATTCA 61 GCTAGTTATT ACAAACATGT CTAAGGTGCT GTCCTGATTT TTTGCCCGAC AGCCCCACTA 121 CCGGGTAACT TTATTACAAG CATGTCGTGC TCGTGCCACG AGAGAGCAAT GAAGCGCAGC 181 CAGGGATATT GCTAACACCG TACACTCCCC TACGTACAGT ACAGATCATT CAAGCAGCGC 241 CTCAAAACAT AGTCCACTTA AGGCCCTGTT CGGTTGTTCC GGATTGGAGC CCTGGATTAA 301 TTCATAGTCG GATTACTTCT CTAATTAAAA AAAAAATTTG ATGAGCTGAA ATGAATCCTG 361 GCTCGTTCCG GTACAACCGA ACAGGCCCTA ATAGTCTGTG CACCCACTGA TTATTCACGA 421 ACAAAAACTT ACAGATCCAA CACTAGCACT AATACGATTC AGTGTGTAAC GCCGTAACAT 481 ATATATATAT TGGTAACGAG AACTCTGGCA Predicted gene structure (within gDNA segment 916 to 1): Exon 1 175 4 ( 172 n); cDNA 258 425 ( 168 n); score: 0.762 MATCH 1007085C02YNX- 12046896- 0.762 172 0.337 C PGS_1007085C02YNX-_12046896- (175 4) Alignment (genomic DNA sequence = upper lines): TTTAGGGCCT GTTCGGTTGT TCCGGATTGG AGCCCTGGAT TAATTCCTAG CTAAATTACT 116 || ||| ||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||| TTAAGGCCCT GTTCGGTTGT TCCGGATTGG AGCCCTGGAT TAATTCATAG TCGGATTACT 317 TCTCTAATT- TATATAGATT TTGATGAGTT GGAATGAATC CTGTTTTATT CCGGGACAAC 57 ||||||||| | | | | | |||||||| | | |||||||| ||| | || |||| ||||| TCTCTAATTA AAAAAAAAAT TTGATGAGCT GAAATGAATC CTGGCTCGTT CCGGTACAAC 377 CGAACGAGCC CTTAGGGGTT TAGGCTCGTC GAGCGACCTA TCCACAATAC AAA 4 ||||| || | | || || | || | | | || || | ||| | || ||| CGAAC-AGGC CCTAATAGTC TGTGCAC--C CACTGA-TTA TTCACGA-AC AAA 425 hqPGS_1007085C02YNX-_12046896- (175 4) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 916: PGL 1 (- strand): 175 4 AGS-1 (175 4) SCR (e 0.762) Exon 1 175 4 ( 172 n); score: 0.762 PGS (175 4) 12046896- 3-phase translation of AGS-1 (-strand): . . . . . . 175 TTTAGGGCCTGTTCGGTTGTTCCGGATTGGAGCCCTGGATTAATTCCTAGCTAAATTACT F R A C S V V P D W S P G L I P S - I T L G P V R L F R I G A L D - F L A K L L - G L F G C S G L E P W I N S - L N Y . . . . . . 115 TCTCTAATTTATATAGATTTTGATGAGTTGGAATGAATCCTGTTTTATTCCGGGACAACC S L I Y I D F D E L E - I L F Y S G T T L - F I - I L M S W N E S C F I P G Q P F S N L Y R F - - V G M N P V L F R D N . . . . . . 55 GAACGAGCCCTTAGGGGTTTAGGCTCGTCGAGCGACCTATCCACAATACAAA E R A L R G L G S S S D L S T I Q N E P L G V - A R R A T Y P Q Y K R T S P - G F R L V E R P I H N T Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 4 TTTGTATTGTGGATAGGTCGCTCGACGAGCCTAAACCCCTAAGGGCTCGTTCGGTTGTCC F V L W I G R S T S L N P - G L V R L S L Y C G - V A R R A - T P K G S F G C P C I V D R S L D E P K P L R A R S V V . . . . . . 64 CGGAATAAAACAGGATTCATTCCAACTCATCAAAATCTATATAAATTAGAGAAGTAATTT R N K T G F I P T H Q N L Y K L E K - F G I K Q D S F Q L I K I Y I N - R S N L P E - N R I H S N S S K S I - I R E V I . . . . . . 124 AGCTAGGAATTAATCCAGGGCTCCAATCCGGAACAACCGAACAGGCCCTAAA S - E L I Q G S N P E Q P N R P - A R N - S R A P I R N N R T G P K - L G I N P G L Q S G T T E Q A L Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:55 2003 ________________________________________________________________________________ Sequence 56: 1007089A03YNX, from 1 to 883, both strands analyzed. ... started at: Mon Nov 10 17:48:55 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 3 ******************************************************************************** EST sequence 1 +strand (File: 5555427+) 1 GGTTCGTTAG GAAAGGAAAT CGATTCCCCC AGCATCTGAT CTCTTCGGTG CTAGAGAAAT 61 ATAGGCCGCC GCCGCCTCCT CCTCATTCGG TGAAAGGTGC GCAGTTAGGG TTGGGAGATC 121 TCTTGCCTCA CGACACGAGC AGCAGAATTT GTCGAGGGCC GCTGGTTGCT GCGAGAGGTC 181 CGGGCCTTCG TGGGATCTTG AAAATTGAAT GTTCTAATGG AGTCCAAGGG TGGCAAGAAG 241 AAGTCTAGCA GTAGTCGTTC CTCCCTGATG TACGAAGCTC CCCTTGGCTA CAGCATCGAG 301 GATATCCGCC CTGCAGGCGG CATCAAGAAG TTCTCCGCTG CTTACTCGAA CTGCGCGAGG 361 AAGCCATCCT GATATCTCTG TTGTCATCCC CATCCTAGTA GCGTAGAAAC CACCTGCATT 421 TTCATTTTGA TCTCCCTAAT CCCTCCGGCT AGCTGCTTTC CAGTGACCAA AAGATATCAA 481 AGACCACTTC CCGTCTTCCT CCCGTGGCCT GTCTGTCATC TGGCTCTGAA ACGATGGCAG 541 TCCTGCAAGT TGCTGCTGCT GCCCCTCCCC CTGTCTCTGG ATTGGGTTCG AGGGATTGAG 601 AAG Predicted gene structure (within gDNA segment 883 to 1): Exon 1 200 48 ( 153 n); cDNA 199 351 ( 153 n); score: 1.000 MATCH 1007089A03YNX- 5555427+ 1.000 153 0.254 C PGS_1007089A03YNX-_5555427+ (200 48) Alignment (genomic DNA sequence = upper lines): TGAAAATTGA ATGTTCTAAT GGAGTCCAAG GGTGGCAAGA AGAAGTCTAG CAGTAGTCGT 141 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAATTGA ATGTTCTAAT GGAGTCCAAG GGTGGCAAGA AGAAGTCTAG CAGTAGTCGT 258 TCCTCCCTGA TGTACGAAGC TCCCCTTGGC TACAGCATCG AGGATATCCG CCCTGCAGGC 81 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCCCTGA TGTACGAAGC TCCCCTTGGC TACAGCATCG AGGATATCCG CCCTGCAGGC 318 GGCATCAAGA AGTTCTCCGC TGCTTACTCG AAC 48 |||||||||| |||||||||| |||||||||| ||| GGCATCAAGA AGTTCTCCGC TGCTTACTCG AAC 351 hqPGS_1007089A03YNX-_5555427+ (200 48) ******************************************************************************** EST sequence 2 +strand (File: 5567059+) 1 ATCCAAAGAA TTCGGCACGA CCAAAGAATT CCCTCCCCTA GCCGCCGCCG CCGCCGCTCG 61 TCTCCCTGAG AGGTGCCGGG ACCGAGGAAC TGGCCGAGTA CTAGGTAGAG AATCGGTTTT 121 TCTTGTCTCA GCCCGGGGTC TGCTGCGTCT GGTGGTGGTG AAGGGGAGAA ATTCGTGAGA 181 TCTGTTCCGG ATCAGGCGTG CGAGCTCGGG AATCAGGGGT TTCACACATA GCTTCGTCGA 241 TTTGAATTTG ATGTACTAAT GGAGTCTAAG GGTGGCAAAA AGTCTAGCAG TAGTCGTTCT 301 ATGATGTATG AAGCTCCCCT TGGCTACAGC ATTGAGGACG TTCGACCTGC CGGAGGCGTG 361 AAGAAGTTCC AGTCTGCTGC TTACTCCAAC TGCGCGAAGA AGCCATCCTG ATATCCCTTT 421 TGGCTTCCTC ATTCTAGTAG TTTAGGATTT CTTTTCTGAC ACTTTGATTC TGACCAATCT 481 CTCTGGCCTG CTGCTTCCTG ATAATCGACC AGGTCCCCAG TCTTGCTCCT TGCACTCCTC 541 CCTCCATCTC CAGCATT Predicted gene structure (within gDNA segment 883 to 1): Exon 1 190 48 ( 143 n); cDNA 251 390 ( 140 n); score: 0.811 MATCH 1007089A03YNX- 5567059+ 0.811 143 0.257 C PGS_1007089A03YNX-_5567059+ (190 48) Alignment (genomic DNA sequence = upper lines): ATGTTCTAAT GGAGTCCAAG GGTGGCAAGA AGAAGTCTAG CAGTAGTCGT TCCTCCCTGA 131 |||| ||||| |||||| ||| |||||| | | | |||||||| |||||||||| | || ||| ATGTACTAAT GGAGTCTAAG GGTGGC-A-A A-AAGTCTAG CAGTAGTCGT T-CT--ATGA 304 TGTACGAAGC TCCCCTTGGC TACAGCATCG AGGATATCCG CCCTGCAGGC GGCATCAAGA 71 |||| ||||| |||||||||| |||||||| | |||| | || ||||| || ||| | |||| TGTATGAAGC TCCCCTTGGC TACAGCATTG AGGACGTTCG ACCTGCCGGA GGCGTGAAGA 364 AGTT-C--TC CGCTGCTTAC TCGAAC 48 |||| | || ||||||||| || ||| AGTTCCAGTC TGCTGCTTAC TCCAAC 390 hqPGS_1007089A03YNX-_5567059+ (190 48) ******************************************************************************** EST sequence 3 +strand (File: 407236+) 1 GTTTCACACA TAGCTTCGTC GATTTGAATT TGATGTACTA ATGGAGTCTA AGGGTGGCAA 61 AAAGTCTAGC AGTAGTCGTT CTATGATGTA TGAAGCTCCC CTTGGCTACA GCATTGAGGA 121 CGTTCGACCT GCCGGACGTG AAGAAGTTCC AGTCTGCTGC TTACTCCAAC TGCGCGAAGA 181 AGCCATCCTG ATATCCCTTT TGGCTTCCTC ATTCTAGTAG TTTAGGATTT CTTTTCT Predicted gene structure (within gDNA segment 763 to 1): Exon 1 197 57 ( 141 n); cDNA 27 158 ( 132 n); score: 0.809 MATCH 1007089A03YNX- 407236+ 0.809 141 0.595 C PGS_1007089A03YNX-_407236+ (197 57) Alignment (genomic DNA sequence = upper lines): AAATTGAATG TTCTAATGGA GTCCAAGGGT GGCAAGAAGA AGTCTAGCAG TAGTCGTTCC 138 || ||| ||| | |||||||| ||| |||||| ||| | || | |||||||||| |||||||| | AATTTG-ATG TACTAATGGA GTCTAAGGGT GGC-A-AA-A AGTCTAGCAG TAGTCGTT-C 81 TCCCTGATGT ACGAAGCTCC CCTTGGCTAC AGCATCGAGG ATATCCGCCC TGCAGGCGGC 78 | |||||| | |||||||| |||||||||| ||||| |||| | | || || ||| | | | T--ATGATGT ATGAAGCTCC CCTTGGCTAC AGCATTGAGG ACGTTCGACC TGC-CG-GAC 137 ATCAAGAAGT TCTCCGCTGC T 57 | ||||||| || |||| | GTGAAGAAGT TCCAGTCTGC T 158 hqPGS_1007089A03YNX-_407236+ (197 57) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 883: PGL 1 (- strand): 200 48 AGS-1 (200 48) SCR (e 1.000) Exon 1 200 48 ( 153 n); score: 1.000 PGS (200 48) 5555427+ PGS (190 48) 5567059+ PGS (197 57) 407236+ 3-phase translation of AGS-1 (-strand): . . . . . . 200 TGAAAATTGAATGTTCTAATGGAGTCCAAGGGTGGCAAGAAGAAGTCTAGCAGTAGTCGT - K L N V L M E S K G G K K K S S S S R E N - M F - W S P R V A R R S L A V V V K I E C S N G V Q G W Q E E V - Q - S . . . . . . 140 TCCTCCCTGATGTACGAAGCTCCCCTTGGCTACAGCATCGAGGATATCCGCCCTGCAGGC S S L M Y E A P L G Y S I E D I R P A G P P - C T K L P L A T A S R I S A L Q A F L P D V R S S P W L Q H R G Y P P C R . . . . 80 GGCATCAAGAAGTTCTCCGCTGCTTACTCGAAC G I K K F S A A Y S N A S R S S P L L T R R H Q E V L R C L L E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 48 GTTCGAGTAAGCAGCGGAGAACTTCTTGATGCCGCCTGCAGGGCGGATATCCTCGATGCT V R V S S G E L L D A A C R A D I L D A F E - A A E N F L M P P A G R I S S M L S S K Q R R T S - C R L Q G G Y P R C . . . . . . 108 GTAGCCAAGGGGAGCTTCGTACATCAGGGAGGAACGACTACTGCTAGACTTCTTCTTGCC V A K G S F V H Q G G T T T A R L L L A - P R G A S Y I R E E R L L L D F F L P C S Q G E L R T S G R N D Y C - T S S C . . . . 168 ACCCTTGGACTCCATTAGAACATTCAATTTTCA T L G L H - N I Q F S P L D S I R T F N F H P W T P L E H S I F Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:56 2003 ________________________________________________________________________________ Sequence 57: 1007089A06YNX, from 1 to 723, both strands analyzed. ... started at: Mon Nov 10 17:48:56 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 5928926+) 1 CGGAGGGCTC TCTGTCTCTG GATAAACCGA TACGCAGAGG AAGCTGCGGA GAGGTGTCCC 61 TGCTCTGCCG GTGAGCTGCG GCCAGCGGGT GAAGAGAAGT GGACCGGACG GGGACGAAGG 121 AGAGAGAGAA GAAGAAAAAG GCGCCGCGGG GGCCATGGCT GGACACGCGC CGGCGAGGGA 181 CAAGACCACC ACCGGCTTCG CCGCTACGTG CAGCCTGCTG AGCCAGTTTC TCAAGGAGAA 241 GAAGGGCGGC CTGCAGGGCC TCGGCGGCCT CGCCATGGCG CCGGCGCCGG CAGCTGGAGC 301 AGGGGCTTTC CGGCCGCCGA CCACCATGAA CTTGCTGTCC GCGCTCGACG CGGCCAAGGC 361 CACCGTCGGG GAGCCAGAAG GCCATGGCCA ACGCACCGGC GGGAATCCAA GGGAGGCAGC 421 TGGGGAGGAG GCGCAGCAGC TGACCATCTT CTACGGCGGA AAAGT Predicted gene structure (within gDNA segment 723 to 49): Exon 1 711 645 ( 67 n); cDNA 346 411 ( 66 n); score: 0.985 Intron 1 644 408 ( 237 n); Pd: 0.965 (s: 0.98), Pa: 0.996 (s: 1.00) Exon 2 407 354 ( 54 n); cDNA 412 465 ( 54 n); score: 1.000 MATCH 1007089A06YNX- 5928926+ 0.992 121 0.260 C PGS_1007089A06YNX-_5928926+ (711 645,407 354) Alignment (genomic DNA sequence = upper lines): CGACGCGGCC AAGGCCACCG TCGGGGAGCC CAGAAGGCCA TGGCCAACGC ACCGGCGGGA 652 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| CGACGCGGCC AAGGCCACCG TCGGGGAG-C CAGAAGGCCA TGGCCAACGC ACCGGCGGGA 404 ATCCAAGGTA AATCACGAGC GAAATTAAAC CCACGACCGT CCGTGTGCAA TACTCCTGGT 592 ||||||| ATCCAAG... .......... .......... .......... .......... .......... 411 AAATTGATGA CCAGGAAATC CAGAAAAATA AAGCGTGTGT TTGCGCATGT GTTCAATTCT 532 .......... .......... .......... .......... .......... .......... 411 CCCCAACAAG AAAGAACAAC ACACACTCAG CTCAAAAGAA AGAACGAACG AACGAACGTG 472 .......... .......... .......... .......... .......... .......... 411 TGATATATAT ATATACACAC ATATATATCA TTATGGGCAA ATAACAGAGA CAGTGTTCCT 412 .......... .......... .......... .......... .......... .......... 411 GCAGGGAGGC AGCTGGGGAG GAGGCGCAGC AGCTGACCAT CTTCTACGGC GGAAAAGT 354 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ....GGAGGC AGCTGGGGAG GAGGCGCAGC AGCTGACCAT CTTCTACGGC GGAAAAGT 465 hqPGS_1007089A06YNX-_5928926+ (711 645,407 354) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 723: PGL 1 (- strand): 711 354 AGS-1 (711 645,407 354) SCR (e 0.985 d 0.965 a 0.996,e 1.000) Exon 1 711 645 ( 67 n); score: 0.985 Intron 1 644 408 ( 237 n); Pd: 0.965 Pa: 0.996 Exon 2 407 354 ( 54 n); score: 1.000 PGS (711 645,407 354) 5928926+ 3-phase translation of AGS-1 (-strand): . . . . . . 711 CGACGCGGCCAAGGCCACCGTCGGGGAGCCCAGAAGGCCATGGCCAACGCACCGGCGGGA R R G Q G H R R G A Q K A M A N A P A G D A A K A T V G E P R R P W P T H R R E T R P R P P S G S P E G H G Q R T G G . : . . . . . 651 ATCCAAG : GGAGGCAGCTGGGGAGGAGGCGCAGCAGCTGACCATCTTCTACGGCGGAAAAG I Q : G R Q L G R R R S S - P S S T A E K S K : G G S W G G G A A A D H L L R R K S N P R : E A A G E E A Q Q L T I F Y G G K . 354 T Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:56 2003 ________________________________________________________________________________ Sequence 58: 1007108F07YNX, from 1 to 546, both strands analyzed. ... started at: Mon Nov 10 17:48:56 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 1 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 5847342-) 1 AGTCCAAAGA TACCTGCTCA CACATTTTAA GCCGCTTCTC CCTTGAAGAC CTTCGGCGAC 61 GAAGCATAGA CCCAACAGAT ACATCGCTGG CTTGGAACCC CTGGGTGGCC TGTTTGTGTT 121 TGTGCGTCCT GTATATGTAT GTACACAACG AGCAGCCCTT TTTTGGGTGA TGTGCCGAGT 181 TCCTAGCCAT GTAGCAGCGT GGATCTGGAT GAGGAGGACA AGGCCATGAG CAGGACTGCG 241 GCCTCCTCCA CTCCCATCAG GACCCTCCGT TTCTTCACCA CTTGGAGCCT GCTGCTTTTG 301 GTGTTGTCTC TGACAGCGAC TGCACTTGTT GCCGGACAGT GATCCTCTTG CTGCTGCTGC 361 TGCTGTGGCG GCGNCGAAAA AAAAAAATTG TTGTGGTTTC TTGGCGCTAT CGAGACCTAG 421 CTCTTGCCTC CGCTTCTTCC TGTACCGGAT CCCACACGCG TTGCAGAGCG ACTGCACCCA 481 AACCAAATTA ACAAGATTGC TCATCC Predicted gene structure (within gDNA segment 1 to 546): Exon 1 313 327 ( 15 n); cDNA 249 262 ( 14 n); score: 0.600 Intron 1 328 434 ( 107 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.74) Exon 2 435 543 ( 109 n); cDNA 263 367 ( 105 n); score: 0.771 MATCH 1007108F07YNX+ 5847342- 0.771 124 0.245 C PGS_1007108F07YNX+_5847342- (313 327,435 543) Alignment (genomic DNA sequence = upper lines): CATTGCATTG AGCGAGCAGC CGGGGGTGGT GGTGCTTAGA CCCTAGCCGT CATGTAGCAG 372 || | | | || || CACTCCCATC AG-GA..... .......... .......... .......... .......... 262 CAGCGCCAGC GGTGGACCTG GATGAGGAGG AACAAGGCCA TGAGCAGGAC TGCGGCCTCC 432 .......... .......... .......... .......... .......... .......... 262 TCCACTCCGT TTCTTCACAG CCTGGCGGCT GCTGTTGCTC CTCTCGTCTC TGACGACGAC 492 | |||||| |||||||| | ||| | || |||| | | | | ||||| |||| |||| ..CCCTCCGT TTCTTCACCA CTTGGAGCCT GCTGCTTTTG GTGTTGTCTC TGACAGCGAC 320 TGCACTGGTT GCTGGACTGT GATCCTGATG TCGCTGTTGC TGCTGGCTTT G 543 |||||| ||| || |||| || |||||| | | |||| ||| |||| ||| | | TGCACTTGTT GCCGGACAGT GATCCT-CT- T-GCTGCTGC TGCT-GCTGT G 367 hqPGS_1007108F07YNX+_5847342- (435 543) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 546: PGL 1 (+ strand): 435 543 AGS-1 (435 543) SCR (e 0.771) Exon 1 435 543 ( 109 n); score: 0.771 PGS (435 543) 5847342- 3-phase translation of AGS-1 (+strand): . . . . . . 435 CACTCCGTTTCTTCACAGCCTGGCGGCTGCTGTTGCTCCTCTCGTCTCTGACGACGACTG H S V S S Q P G G C C C S S R L - R R L T P F L H S L A A A V A P L V S D D D C L R F F T A W R L L L L L S S L T T T . . . . . 495 CACTGGTTGCTGGACTGTGATCCTGATGTCGCTGTTGCTGCTGGCTTTG H W L L D C D P D V A V A A G F T G C W T V I L M S L L L L A L A L V A G L - S - C R C C C W L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 543 CAAAGCCAGCAGCAACAGCGACATCAGGATCACAGTCCAGCAACCAGTGCAGTCGTCGTC Q S Q Q Q Q R H Q D H S P A T S A V V V K A S S N S D I R I T V Q Q P V Q S S S K P A A T A T S G S Q S S N Q C S R R . . . . . 483 AGAGACGAGAGGAGCAACAGCAGCCGCCAGGCTGTGAAGAAACGGAGTG R D E R S N S S R Q A V K K R S E T R G A T A A A R L - R N G V Q R R E E Q Q Q P P G C E E T E Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:57 2003 ________________________________________________________________________________ Sequence 59: 1007113H10YNX, from 1 to 983, both strands analyzed. ... started at: Mon Nov 10 17:48:57 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 1298528+) 1 CGCCGAAGAC GAAGGAGAAG AGGGTACGGC CGTCTCCTCG CCCCCATGGC CCACGAGAAG 61 AAGCTGTCCA ACCCGATGCG GAGATCAAGG TGCAGAAGCT CGTCCTCAAT ATCTCCGTCG 121 GGGAGAGCGG CGACCGTCTC ACCCGCGCCG CAAAGGTGCT CGAGCAGCTC AGCGCCAGAC 181 CCCCGTCTTC TCCAAGGCGA GGTACACGGT GCGGTCGTTC GGCATCCGGC GTAACGAGAA 241 GATCGC Predicted gene structure (within gDNA segment 892 to 1): Exon 1 494 445 ( 50 n); cDNA 1 48 ( 48 n); score: 0.940 Intron 1 444 339 ( 106 n); Pd: 0.345 (s: 0.94), Pa: 0.000 (s: 0.98) Exon 2 338 188 ( 151 n); cDNA 49 197 ( 149 n); score: 0.974 Intron 2 187 98 ( 90 n); Pd: 0.984 (s: 0.98), Pa: 0.542 (s: 0.96) Exon 3 97 49 ( 49 n); cDNA 198 246 ( 49 n); score: 0.959 MATCH 1007113H10YNX- 1298528+ 0.965 250 1.016 C PGS_1007113H10YNX-_1298528+ (494 445,338 188,97 49) Alignment (genomic DNA sequence = upper lines): CGCCGAAGGA CGGAAGGAGA AGAGGGCACG GCCGTCTCCT CGCCCCCATG GTACGCCGCC 435 ||||||| || | |||||||| |||||| ||| |||||||||| |||||||||| CGCCGAA-GA C-GAAGGAGA AGAGGGTACG GCCGTCTCCT CGCCCCCATG .......... 48 TCCATCCCAT CCCCGTGCTA CCATTCCCAT CTTGTCTCCT TTCTCTTCCT CGTCCGGCCT 375 .......... .......... .......... .......... .......... .......... 48 GTGATTTGTG AGGCCAACTC GCCCGGCGTC CCGCAGGCCC ACGAGAAGAA GCTGTCCAAC 315 |||| |||||||||| |||||||||| .......... .......... .......... ......GCCC ACGAGAAGAA GCTGTCCAAC 72 CCGATGCGGG AGATCAAGGT GCAGAAGCTC GTCCTCAATA TCTCCGGCGG GGAGAGCGGC 255 ||||||| || |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| CCGATGC-GG AGATCAAGGT GCAGAAGCTC GTCCTCAATA TCTCCGTCGG GGAGAGCGGC 131 GACCGACTCA CCCGCGCCGC AAAGGTGCTC GAGCAGCTCA GCGGCCAGAC CCCCGTCTTC 195 ||||| |||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| GACCGTCTCA CCCGCGCCGC AAAGGTGCTC GAGCAGCTCA GC-GCCAGAC CCCCGTCTTC 190 TCCAAGGGTG AGTACTGAGT TCTCGCGGCT CCGTTTCTTG CCTTCCGCTG ACGGGGTGCT 135 ||||||| TCCAAGG... .......... .......... .......... .......... .......... 197 TCCTTCTGCC TGCTGGCGGT GTTGGTTCGT CTTGCAGCGA GGTACACGGT GCGGACGTTC 75 ||| |||||||||| |||| ||||| .......... .......... .......... .......CGA GGTACACGGT GCGGTCGTTC 220 GGCATCCCGC GTAACGAGAA GATCGC 49 ||||||| || |||||||||| |||||| GGCATCCGGC GTAACGAGAA GATCGC 246 hqPGS_1007113H10YNX-_1298528+ (494 445,338 188,97 49) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 983: PGL 1 (- strand): 494 49 AGS-1 (494 445,338 188,97 49) SCR (e 0.940 d 0.345 a 0.000,e 0.974 d 0.984 a 0.542,e 0.959) Exon 1 494 445 ( 50 n); score: 0.940 Intron 1 444 339 ( 106 n); Pd: 0.345 Pa: 0.000 Exon 2 338 188 ( 151 n); score: 0.974 Intron 2 187 98 ( 90 n); Pd: 0.984 Pa: 0.542 Exon 3 97 49 ( 49 n); score: 0.959 PGS (494 445,338 188,97 49) 1298528+ 3-phase translation of AGS-1 (-strand): . . . . . : . 494 CGCCGAAGGACGGAAGGAGAAGAGGGCACGGCCGTCTCCTCGCCCCCATG : GCCCACGAGA R R R T E G E E G T A V S S P P W : P T R A E G R K E K R A R P S P R P H : G P R E P K D G R R R G H G R L L A P M : A H E . . . . . . 328 AGAAGCTGTCCAACCCGATGCGGGAGATCAAGGTGCAGAAGCTCGTCCTCAATATCTCCG R S C P T R C G R S R C R S S S S I S P E A V Q P D A G D Q G A E A R P Q Y L R K K L S N P M R E I K V Q K L V L N I S . . . . . . 268 GCGGGGAGAGCGGCGACCGACTCACCCGCGCCGCAAAGGTGCTCGAGCAGCTCAGCGGCC A G R A A T D S P A P Q R C S S S S A A R G E R R P T H P R R K G A R A A Q R P G G E S G D R L T R A A K V L E Q L S G . . . : . . . 208 AGACCCCCGTCTTCTCCAAGG : CGAGGTACACGGTGCGGACGTTCGGCATCCCGCGTAACG R P P S S P R : R G T R C G R S A S R V T D P R L L Q G : E V H G A D V R H P A - R Q T P V F S K : A R Y T V R T F G I P R N . 58 AGAAGATCGC R R S E D R E K I Maximal non-overlapping open reading frames (>= 64 codons): >1007113H10YNX-_PGL-1_AGS-1_PPS_1 (494 445,338 188,97 50) (frame '1'; 249 bp, 83 residues) 1 RRRTEGEEGT AVSSPPWPTR RSCPTRCGRS RCRSSSSISP AGRAATDSPA PQRCSSSSAA 61 RPPSSPRRGT RCGRSASRVT RRS >1007113H10YNX-_PGL-1_AGS-1_PPS_2 (492 445,338 188,97 51) (frame '0'; 246 bp, 82 residues) 1 PKDGRRRGHG RLLAPMAHEK KLSNPMREIK VQKLVLNISG GESGDRLTRA AKVLEQLSGQ 61 TPVFSKARYT VRTFGIPRNE KI >1007113H10YNX-_PGL-1_AGS-1_PPS_3 (493 445,338 188,97 61) (frame '2'; 234 bp, 78 residues) 1 AEGRKEKRAR PSPRPHGPRE EAVQPDAGDQ GAEARPQYLR RGERRPTHPR RKGARAAQRP 61 DPRLLQGEVH GADVRHPA- ... finished at: Mon Nov 10 17:48:57 2003 ________________________________________________________________________________ Sequence 60: 1008016A09YNX, from 1 to 569, both strands analyzed. ... started at: Mon Nov 10 17:48:57 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 1546846+) 1 AGCGTGTGAC CGGCGGCGGC GAGGTGATGG CGATGGACCC TGACGCGGTN NNNNGGCCTT 61 CGTGGAGCAT TACTACCGAA CGTTCGACAC CAACCGCGCG GNNCTGGTTG GCTGTACCAG 121 GAGACCTCCA TGCTCACCTT CGAGGGCCAG AAGTTCCAGG GCCCCTCCNC CATTGCCGGC 181 AAGCTCGGAT CTCTCCCTTT CCAGGCCTGC NAGCATCAGA TCGTCACCGT AGACTGCCAG 241 CCATCGGGTC CCCAGGGAGG CATGCTCGTC TTCGTCTCC Predicted gene structure (within gDNA segment 46 to 569): Exon 1 374 569 ( 196 n); cDNA 2 191 ( 190 n); score: 0.883 MATCH 1008016A09YNX+ 1546846+ 0.883 196 0.703 C PGS_1008016A09YNX+_1546846+ (374 569) Alignment (genomic DNA sequence = upper lines): GCGTGCCGAC CGGCGGCGGC GGCGAGGTGA TGGCGATGGA CCCGGACGCG GTGGCGAAAG 433 ||||| ||| ||||| | | |||||||||| |||||||||| ||| |||||| || | GCGTG-TGAC CGGCG--G-C GGCGAGGTGA TGGCGATGGA CCCTGACGCG GT-NNNNNGG 56 CCTTCGGGGA GCACTACTAC CGGACGTTCG ACACCAACCG CGCGGCGCTG GTGGGGCTGT 493 |||||| ||| ||| |||||| || ||||||| |||||||||| ||||| ||| || |||||| CCTTCGTGGA GCATTACTAC CGAACGTTCG ACACCAACCG CGCGGNNCTG GT-TGGCTGT 115 ATCAGGAGAC CTCCATGCTC ACCTTCGAGG GCCAGAAGTT CCAGGGCCCA TCCGCCATTG 553 | |||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||| |||||| ACCAGGAGAC CTCCATGCTC ACCTTCGAGG GCCAGAAGTT CCAGGGCCCC TCCNCCATTG 175 CCGGCAAGCT CGGATC 569 |||||||||| |||||| CCGGCAAGCT CGGATC 191 hqPGS_1008016A09YNX+_1546846+ (374 569) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 569: PGL 1 (+ strand): 374 569 AGS-1 (374 569) SCR (e 0.883) Exon 1 374 569 ( 196 n); score: 0.883 PGS (374 569) 1546846+ 3-phase translation of AGS-1 (+strand): . . . . . . 374 GCGTGCCGACCGGCGGCGGCGGCGAGGTGATGGCGATGGACCCGGACGCGGTGGCGAAAG A C R P A A A A R - W R W T R T R W R K R A D R R R R R G D G D G P G R G G E S V P T G G G G E V M A M D P D A V A K . . . . . . 434 CCTTCGGGGAGCACTACTACCGGACGTTCGACACCAACCGCGCGGCGCTGGTGGGGCTGT P S G S T T T G R S T P T A R R W W G C L R G A L L P D V R H Q P R G A G G A V A F G E H Y Y R T F D T N R A A L V G L . . . . . . 494 ATCAGGAGACCTCCATGCTCACCTTCGAGGGCCAGAAGTTCCAGGGCCCATCCGCCATTG I R R P P C S P S R A R S S R A H P P L S G D L H A H L R G P E V P G P I R H C Y Q E T S M L T F E G Q K F Q G P S A I . . 554 CCGGCAAGCTCGGATC P A S S D R Q A R I A G K L G Maximal non-overlapping open reading frames (>= 64 codons): >1008016A09YNX+_PGL-1_AGS-1_PPS_1 (375 569) (frame '2'; 195 bp, 65 residues) 1 RADRRRRRGD GDGPGRGGES LRGALLPDVR HQPRGAGGAV SGDLHAHLRG PEVPGPIRHC 61 RQARI >1008016A09YNX+_PGL-1_AGS-1_PPS_2 (376 567) (frame '0'; 192 bp, 64 residues) 1 VPTGGGGEVM AMDPDAVAKA FGEHYYRTFD TNRAALVGLY QETSMLTFEG QKFQGPSAIA 61 GKLG 3-phase translation of AGS-1 (-strand): . . . . . . 569 GATCCGAGCTTGCCGGCAATGGCGGATGGGCCCTGGAACTTCTGGCCCTCGAAGGTGAGC D P S L P A M A D G P W N F W P S K V S I R A C R Q W R M G P G T S G P R R - A S E L A G N G G W A L E L L A L E G E . . . . . . 509 ATGGAGGTCTCCTGATACAGCCCCACCAGCGCCGCGCGGTTGGTGTCGAACGTCCGGTAG M E V S - Y S P T S A A R L V S N V R - W R S P D T A P P A P R G W C R T S G S H G G L L I Q P H Q R R A V G V E R P V . . . . . . 449 TAGTGCTCCCCGAAGGCTTTCGCCACCGCGTCCGGGTCCATCGCCATCACCTCGCCGCCG - C S P K A F A T A S G S I A I T S P P S A P R R L S P P R P G P S P S P R R R V V L P E G F R H R V R V H R H H L A A . . 389 CCGCCGGTCGGCACGC P P V G T R R S A R A A G R H Maximal non-overlapping open reading frames (>= 64 codons): >1008016A09YNX-_PGL-1_AGS-1_PPS_1 (567 376) (frame '0'; 192 bp, 64 residues) 1 SELAGNGGWA LELLALEGEH GGLLIQPHQR RAVGVERPVV VLPEGFRHRV RVHRHHLAAA 61 AGRH ... finished at: Mon Nov 10 17:48:58 2003 ________________________________________________________________________________ Sequence 61: 1008033F12YNX, from 1 to 683, both strands analyzed. ... started at: Mon Nov 10 17:48:58 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:58 2003 ________________________________________________________________________________ Sequence 62: 1008035C01YNX, from 1 to 985, both strands analyzed. ... started at: Mon Nov 10 17:48:58 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:58 2003 ________________________________________________________________________________ Sequence 63: 1008059B08YNX, from 1 to 1145, both strands analyzed. ... started at: Mon Nov 10 17:48:58 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:58 2003 ________________________________________________________________________________ Sequence 64: 1008074H08YNX, from 1 to 1007, both strands analyzed. ... started at: Mon Nov 10 17:48:58 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 485604-) 1 GACCATCTGT ATCATAGCTA GCAGATGGGA GGTTGAAACA TCTTNCGATC AAGCAACCAA 61 CTGCAACATC GCGGAACACA GAANACAAGA GGTACCACTG TTACAATCAC ACTTAGTGAA 121 GCGCAANACA GATAGACAGC TGCCTTATCA TCCTCTAGGT ATTGGAGACG GGTGACCAGT 181 CTCATTTCTT TCCACTTTTC TTCAGANCCG AGCCCCCAAT CGCGCCCTTC TGTGCCTTGG 241 CCTTAAGCTC CTTCAGTGCT TTTTCCTCAT CTTTCTTCTT CTGNAGATAT NCAAGATCCG 301 TCTCGTCGTA CTCCTTCTTG TCGGCNGNGG GNCGCCTTCA GCGGCTTGGC CTTCCCTCCT 361 TGCTTCNACA TGGNTCGCTC ACGTCCCCGG ANGCGTGGAA Predicted gene structure (within gDNA segment 1 to 830): Exon 1 273 330 ( 58 n); cDNA 302 360 ( 59 n); score: 0.897 MATCH 1008074H08YNX+ 485604- 0.897 58 0.145 C PGS_1008074H08YNX+_485604- (273 330) Alignment (genomic DNA sequence = upper lines): CTCGTCGTAC TCCTTCTTGT CGACCTTGGG -CGCCTTCAG CGGCTTGGCC TTCCCTCCT 330 |||||||||| |||||||||| || | ||| ||||||||| |||||||||| ||||||||| CTCGTCGTAC TCCTTCTTGT CGGCNGNGGG NCGCCTTCAG CGGCTTGGCC TTCCCTCCT 360 hqPGS_1008074H08YNX+_485604- (273 330) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 1007: PGL 1 (+ strand): 273 330 AGS-1 (273 330) SCR (e 0.897) Exon 1 273 330 ( 58 n); score: 0.897 PGS (273 330) 485604- 3-phase translation of AGS-1 (+strand): . . . . . . 273 CTCGTCGTACTCCTTCTTGTCGACCTTGGGCGCCTTCAGCGGCTTGGCCTTCCCTCCT L V V L L L V D L G R L Q R L G L P S S S Y S F L S T L G A F S G L A F P P R R T P S C R P W A P S A A W P S L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 330 AGGAGGGAAGGCCAAGCCGCTGAAGGCGCCCAAGGTCGACAAGAAGGAGTACGACGAG R R E G Q A A E G A Q G R Q E G V R R G G K A K P L K A P K V D K K E Y D E E G R P S R - R R P R S T R R S T T Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:59 2003 ________________________________________________________________________________ Sequence 65: 1008083A08YNX, from 1 to 272, both strands analyzed. ... started at: Mon Nov 10 17:48:59 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:59 2003 ________________________________________________________________________________ Sequence 66: 1008086G11YNX, from 1 to 830, both strands analyzed. ... started at: Mon Nov 10 17:48:59 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:59 2003 ________________________________________________________________________________ Sequence 67: 13387479, from 1 to 371, both strands analyzed. ... started at: Mon Nov 10 17:48:59 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 3 ******************************************************************************** EST sequence 2 +strand (File: 5555405+) 1 CGAGCCACCG AGAGAGAGGG CGAGAGTGAG TGAGTGAGAG GGAGAGTGAG AGTGGGGGAT 61 TCAAGTTTCA AACTCACTAT CGAGGGGGAT AGGAAGGTGG TCATCGGTCC ATAGCTAGCT 121 CGTCGTCGAC CATGGCTGAC TGGGGCCCCG TGGTGATCGC GACGGTGCTG TTCGTGCTGC 181 TCACGCCGGG CCTGCTGTTC CAGCTGCCGG CGCACGGCCG CATCGTCGGC TTCGGCACCA 241 TGCACACCAG CGGCATCGCC ATCCTCGTCC ACGCCGTCCT CTACTTCGCG CTCATCACCA 301 TCTTCCTCAT CGCCATCGGC GTCCACATCT ACGCCGGCTA GCTAGGGTGT CTTCTAGTCC 361 ACACCCCCTT CGTCTCTTCC TCTCATCATC GGCCTCTTGC TTCCTCGTCA TGTACTACTA 421 GTCTACTACT ACTCCTAGTC TACTACTACT ACTAGTAGTC TTCGTTTCGC GGATACCCCG 481 CAGTATGTTG GTATTTATTA TGGGATTGTT ATGGTGTTTT ATGTTCCAGC TCCTTCCGTC 541 GTCTTAACGC TTGGTTGCGT TGCGCATCCA TTTCATTGAA GATGATCCGG CCG Predicted gene structure (within gDNA segment 1 to 371): Exon 1 3 358 ( 356 n); cDNA 89 441 ( 353 n); score: 0.958 MATCH 13387479+ 5555405+ 0.958 356 0.960 G PGS_13387479+_5555405+ (3 358) Alignment (genomic DNA sequence = upper lines): ATAGGAAGGT GGTCATCGGT CCACAGCTAG GTCGTCG-CG CCCATGGCTG ACTGGGGCCC 61 |||||||||| |||||||||| ||| |||||| |||||| || ||||||||| |||||||||| ATAGGAAGGT GGTCATCGGT CCATAGCTAG CTCGTCGTCG ACCATGGCTG ACTGGGGCCC 148 CGTGGTGATC GCGACGGTGC TGTTCGTGCT GCTCACGCCG GGCCTGCTGT TCCAGCTGCC 121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGTGATC GCGACGGTGC TGTTCGTGCT GCTCACGCCG GGCCTGCTGT TCCAGCTGCC 208 GGCGCACGGC CGAATCGTCG GCTTCGGCAC CATGCACACC AGCGGCCTCG CCATCCTCGT 181 |||||||||| || ||||||| |||||||||| |||||||||| |||||| ||| |||||||||| GGCGCACGGC CGCATCGTCG GCTTCGGCAC CATGCACACC AGCGGCATCG CCATCCTCGT 268 CCACGCCGTC CTCTACTTCG CGCTCATCAC CATCTTCCTC ATCGCCATCG GCGTCCACAT 241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACGCCGTC CTCTACTTCG CGCTCATCAC CATCTTCCTC ATCGCCATCG GCGTCCACAT 328 CTACGCCGGC TAGCTAGAGT GTCTTCTAGT CCACACCCCC CTTCGTCTCT TCCTCTCATC 301 |||||||||| ||||||| || |||||||||| ||||| |||| |||||||||| |||||||||| CTACGCCGGC TAGCTAGGGT GTCTTCTAGT CCACA-CCCC CTTCGTCTCT TCCTCTCATC 387 ATCGGCCCCT GCTAGCTTCC TCGTCATGTA CTACTAGTCT ACTACTACTA CTGGTCT 358 ||||| ||| || |||||| |||||||||| |||||||||| ||||||||| || |||| ATCGG--CCT -CTTGCTTCC TCGTCATGTA CTACTAGTCT ACTACTACTC CTAGTCT 441 hqPGS_13387479+_5555405+ (3 358) ******************************************************************************** EST sequence 4 -strand (File: 5456347-) 1 GTTCAGTTTC AACTCCTATC GAGGGGGATA GGAAGGTGGT CATCGGTCCA TAGCTAGCTC 61 GTCGTCGACC ATGGCTGACT GGGGCCCCGT GGTGATCGCG ACGGTGCTGT TCGTGCTGCT 121 CACGCCGGGC CTGCTGTTCC AGCTGCCGGC GCACGGCCGC ATCGTCGGCT TCGGCACCAT 181 GCACACCAGC GGCATCGCCA TCCTCGTCCA CGCCGTCCTC TACTTCGCGC TCATCACCAT 241 CTTCCTCATC GCCATCGGCG TCCACATCTA CGCCGGCTAG CTAGGGTGTC TTCTAGTCCA 301 CACCCCCTTC GTCTCTTCCT CTCATCATCG GCCTCTTGCT TCCTCGTCAT GTACTACTAG 361 TCTACTACTA CTCCTAGTCT ACTACTACTA CTAGTAGTCT TCGTTTCGCG GATACCCCGC 421 AGTATGTTGG TATTTATTAT GGGATTGTTA TGGTGTTTTA TGTTCCAGCT CCTTCCGTCG 481 TCTTAACGCT TGGTTGCGTT GCGCATCCAT TTCATTGAAG ATGATCCGGC CGGGCTCTTG 541 ATTCAGTCTG AACAGTTGTG TATTTATACA AGACTCAGAA TGAACACTTA AAAAAAAAAA 601 AAAAAAA Predicted gene structure (within gDNA segment 1 to 371): Exon 1 3 358 ( 356 n); cDNA 28 380 ( 353 n); score: 0.958 PPA cDNA 590 607 MATCH 13387479+ 5456347- 0.958 356 0.960 G PGS_13387479+_5456347- (3 358) Alignment (genomic DNA sequence = upper lines): ATAGGAAGGT GGTCATCGGT CCACAGCTAG GTCGTCG-CG CCCATGGCTG ACTGGGGCCC 61 |||||||||| |||||||||| ||| |||||| |||||| || ||||||||| |||||||||| ATAGGAAGGT GGTCATCGGT CCATAGCTAG CTCGTCGTCG ACCATGGCTG ACTGGGGCCC 87 CGTGGTGATC GCGACGGTGC TGTTCGTGCT GCTCACGCCG GGCCTGCTGT TCCAGCTGCC 121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGTGATC GCGACGGTGC TGTTCGTGCT GCTCACGCCG GGCCTGCTGT TCCAGCTGCC 147 GGCGCACGGC CGAATCGTCG GCTTCGGCAC CATGCACACC AGCGGCCTCG CCATCCTCGT 181 |||||||||| || ||||||| |||||||||| |||||||||| |||||| ||| |||||||||| GGCGCACGGC CGCATCGTCG GCTTCGGCAC CATGCACACC AGCGGCATCG CCATCCTCGT 207 CCACGCCGTC CTCTACTTCG CGCTCATCAC CATCTTCCTC ATCGCCATCG GCGTCCACAT 241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACGCCGTC CTCTACTTCG CGCTCATCAC CATCTTCCTC ATCGCCATCG GCGTCCACAT 267 CTACGCCGGC TAGCTAGAGT GTCTTCTAGT CCACACCCCC CTTCGTCTCT TCCTCTCATC 301 |||||||||| ||||||| || |||||||||| ||||| |||| |||||||||| |||||||||| CTACGCCGGC TAGCTAGGGT GTCTTCTAGT CCACA-CCCC CTTCGTCTCT TCCTCTCATC 326 ATCGGCCCCT GCTAGCTTCC TCGTCATGTA CTACTAGTCT ACTACTACTA CTGGTCT 358 ||||||| || | |||||| |||||||||| |||||||||| ||||||||| || |||| ATCGGCCTCT --T-GCTTCC TCGTCATGTA CTACTAGTCT ACTACTACTC CTAGTCT 380 hqPGS_13387479+_5456347- (3 358) ******************************************************************************** EST sequence 1 +strand (File: 5268804+) 1 GGCACGACGA GAGAGAGAGC GTGTGGATTT GGGGGAGCTT CTTCACTGGA GAGTGGAGAG 61 CTCCGGTAGC GAGGCGAAGG AAGGAAGAGG GAGGAGGGGA ATCAGAGAGG TCTCCCCGAT 121 GGCGGACTGG GGCCCCGTGA TCGTAGCGAC GGTGCTGTTC GTGGTCCTCA CGCCGGGGCT 181 GCTCTGCACG CTGCCGGGCC GGGGCCGCGT CGCAGAGTTC GGCAGCATGC ACACCAGCGG 241 CCTGGCCATC CTCGTCCACG CCGTCCTCTA CTTCGCGCTC ATCACCATCT TCCTCATCGC 301 CATCGGCATC CACGTCTACG CGGGCTAGTA GCCGCCCGGA GCAGGATGCG ATATACGGAG 361 TAGTAGGTTG CGCCGCCGCC GTGATCCAGA TCAAGATCTG TTTTTTTTTC TTTGTTCCTT 421 TTCGCTCTCT CTCTCTCTCT CTGCCCTCCT CCTCGGATTT GCTGCCAGTA TGGACGAAAT 481 CATTGATTAT GGTCTGGACG TCTGCTTGTA ATCAATCATG ACTTGTGTAA TCTTGCTTGC 541 GGCCATCAGT ATCGATCAAA TATCAATCGC GCTCATTCCA AAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 1 to 371): Exon 1 5 254 ( 250 n); cDNA 82 328 ( 247 n); score: 0.824 PPA cDNA 580 599 MATCH 13387479+ 5268804+ 0.824 250 0.674 G PGS_13387479+_5268804+ (5 254) Alignment (genomic DNA sequence = upper lines): AGGAAGGTGG TCATCGGTCC ACAGCTAGGT CGTCGCGCCC ATGGCTGACT GGGGCCCCGT 64 |||||| || || ||| |||| | || | || ||||| |||| |||||||||| AGGAAGAGGG AGGAGGGGAA TCAGAGAGGT C-TC-C-CCG ATGGCGGACT GGGGCCCCGT 138 GGTGATCGCG ACGGTGCTGT TCGTGCTGCT CACGCCGGGC CTGCTGTTCC AGCTGCCGGC 124 | | | ||| |||||||||| ||||| | || ||||||||| ||||| | | |||||||| GATCGTAGCG ACGGTGCTGT TCGTGGTCCT CACGCCGGGG CTGCTCTGCA CGCTGCCGGG 198 GCACGGCCGA ATCGTCGGCT TCGGCACCAT GCACACCAGC GGCCTCGCCA TCCTCGTCCA 184 | ||||| ||| | | |||||| ||| |||||||||| ||||| |||| |||||||||| CCGGGGCCGC GTCGCAGAGT TCGGCAGCAT GCACACCAGC GGCCTGGCCA TCCTCGTCCA 258 CGCCGTCCTC TACTTCGCGC TCATCACCAT CTTCCTCATC GCCATCGGCG TCCACATCTA 244 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||| |||| CGCCGTCCTC TACTTCGCGC TCATCACCAT CTTCCTCATC GCCATCGGCA TCCACGTCTA 318 CGCCGGCTAG 254 ||| |||||| CGCGGGCTAG 328 hqPGS_13387479+_5268804+ (5 254) ******************************************************************************** EST sequence 3 -strand (File: 5006193-) 1 CGGCACGAGC CACACTCCCG CTCTCCTGTA CTCTGCTCCG TGATCTGGTC TGGTGAGATC 61 GGGGATCGGA CCATCGACTC GGCGAGACAT GGCGGACTGG GGCCCCGTGG TGGTGGGCGT 121 GGTGCTGTTC GTGCTGCTCT CGCCGGGCCT GCTCTGCGAG CTGCCGGGCA CCCACCGCCA 181 CGTCGACTTC GGCGGCTTCC ACACCAACGG CAAGGCCATC TTCGTCCACA CCCTCGTCTT 241 CTTCGCCGCC TTCACCATCC TCACGCTCGC GCTCCACATC CACATCTACA CCGGCTAGCT 301 AGCTAGCTAG TGCGGAGCAC ATGCCGCCGG TCTGGACTCG CGGAGGTCTC AGATCAGAAA 361 GGAACGCCGG CCGGCGGCGC GTCCTGTGTT GCTGCTCTTG TTCCTCTGCA GTTCGATCGA 421 TTCGACGAAG TGCTTGTAAC TGCCTAAGCT TCCTCCTTGC TATGCTAGTT ACTCTCTATC 481 TATCATGTAA AGGCCGCCAT GGTCGTCCAT CTGTAGCTGG GCTTGCAGCA ACAGGAACTA 541 GTGCGTGCCC TTTAATTAAT CGAATC Predicted gene structure (within gDNA segment 1 to 371): Exon 1 34 258 ( 225 n); cDNA 79 302 ( 224 n); score: 0.769 MATCH 13387479+ 5006193- 0.769 225 0.606 G PGS_13387479+_5006193- (34 258) Alignment (genomic DNA sequence = upper lines): TCGTCGCGCC CATGGCTGAC TGGGGCCCCG TGGTGATCGC GACGGTGCTG TTCGTGCTGC 93 ||| || | |||||| ||| |||||||||| ||||| | | ||||||| |||||||||| TCGGCGAG-A CATGGCGGAC TGGGGCCCCG TGGTGGTGGG CGTGGTGCTG TTCGTGCTGC 137 TCACGCCGGG CCTGCTGTTC CAGCTGCCGG CGCA-CGGCC GAATCGTCGG CTTCGGCACC 152 || ||||||| |||||| | | ||||||||| ||| | || | ||||| ||||||| | TCTCGCCGGG CCTGCTCTGC GAGCTGCCGG -GCACCCACC GCCACGTCGA CTTCGGCGGC 196 ATGCACACCA GCGGCCTCGC CATCCTCGTC CACGCCGTCC TCTACTTCGC GCTCATCACC 212 | ||||||| |||| || |||| ||||| ||| || || ||| |||||| | ||||| TTCCACACCA ACGGCAAGGC CATCTTCGTC CACACCCTCG TCTTCTTCGC CGCCTTCACC 256 ATCTTCCTCA TCGCCATCGG CGTCCACATC TACGCCGGCT AGCTAG 258 ||| || |||| || | |||||||| ||| |||||| |||||| ATCCTCACGC TCGCGCTCCA CATCCACATC TACACCGGCT AGCTAG 302 hqPGS_13387479+_5006193- (34 258) ******************************************************************************** EST sequence 5 -strand (File: 12970938-) 1 CGGCACGAGC CACACTCCCG CTCTCCTGCT ACTCTGCTCC GTGATCTGGT CTGGTGAGAT 61 CGGGGATCGG ACCATCGACT CGGCGAGACA TGGCGGACTG GGGCCCCGTG GTGGTGGGCG 121 TGGTGCTGTT CGTGCTGCTC TCGCCGGGCC TGCTCTGCGA GCTGCCGGGC ACCCACCGCC 181 ACGTCGACTT CGGCGGCTTC CACACCAACG GCAAGGCCAT CTTCGTCCAC ACCCTCGTCT 241 TCTTCGCCGC CTTCACCATC CTCACGCTCG CGCTCCACAT CCACATCTAC ACCGGCTAGC 301 TAGCTAGCTA GTGCGGAGCA CATGCCGCCG GTCTGGACTC GCGGAGGTCT CAGATCAGAA 361 AGGAACGCCG GCAGAAGGCG CGTCCTGTGT TGCTGCTCTT GTTCCTCTGC AGTTCGATCG 421 ATTCGACGAA GTGCTTGTAA CTGCCTAAGC TTCCTCCTTG CTATGCTAGT TACTCTCTAT 481 CTATCATGTA AAGGCCGCCA TGGTCGTCCA TCTGTAGCTG GGCTTGCAGC AACAGGAACT 541 AGTGCGTGCC Predicted gene structure (within gDNA segment 1 to 371): Exon 1 34 258 ( 225 n); cDNA 80 303 ( 224 n); score: 0.769 MATCH 13387479+ 12970938- 0.769 225 0.606 G PGS_13387479+_12970938- (34 258) Alignment (genomic DNA sequence = upper lines): TCGTCGCGCC CATGGCTGAC TGGGGCCCCG TGGTGATCGC GACGGTGCTG TTCGTGCTGC 93 ||| || | |||||| ||| |||||||||| ||||| | | ||||||| |||||||||| TCGGCGAG-A CATGGCGGAC TGGGGCCCCG TGGTGGTGGG CGTGGTGCTG TTCGTGCTGC 138 TCACGCCGGG CCTGCTGTTC CAGCTGCCGG CGCA-CGGCC GAATCGTCGG CTTCGGCACC 152 || ||||||| |||||| | | ||||||||| ||| | || | ||||| ||||||| | TCTCGCCGGG CCTGCTCTGC GAGCTGCCGG -GCACCCACC GCCACGTCGA CTTCGGCGGC 197 ATGCACACCA GCGGCCTCGC CATCCTCGTC CACGCCGTCC TCTACTTCGC GCTCATCACC 212 | ||||||| |||| || |||| ||||| ||| || || ||| |||||| | ||||| TTCCACACCA ACGGCAAGGC CATCTTCGTC CACACCCTCG TCTTCTTCGC CGCCTTCACC 257 ATCTTCCTCA TCGCCATCGG CGTCCACATC TACGCCGGCT AGCTAG 258 ||| || |||| || | |||||||| ||| |||||| |||||| ATCCTCACGC TCGCGCTCCA CATCCACATC TACACCGGCT AGCTAG 303 hqPGS_13387479+_12970938- (34 258) Total number of EST alignments reported: 5 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 371: PGL 1 (+ strand): 3 358 AGS-1 (3 358) SCR (e 0.958) Exon 1 3 358 ( 356 n); score: 0.958 PGS (3 358) 5555405+ PGS (3 358) 5456347- PGS (5 254) 5268804+ PGS (34 258) 5006193- PGS (34 258) 12970938- 3-phase translation of AGS-1 (+strand): . . . . . . 3 ATAGGAAGGTGGTCATCGGTCCACAGCTAGGTCGTCGCGCCCATGGCTGACTGGGGCCCC I G R W S S V H S - V V A P M A D W G P - E G G H R S T A R S S R P W L T G A P R K V V I G P Q L G R R A H G - L G P . . . . . . 63 GTGGTGATCGCGACGGTGCTGTTCGTGCTGCTCACGCCGGGCCTGCTGTTCCAGCTGCCG V V I A T V L F V L L T P G L L F Q L P W - S R R C C S C C S R R A C C S S C R R G D R D G A V R A A H A G P A V P A A . . . . . . 123 GCGCACGGCCGAATCGTCGGCTTCGGCACCATGCACACCAGCGGCCTCGCCATCCTCGTC A H G R I V G F G T M H T S G L A I L V R T A E S S A S A P C T P A A S P S S S G A R P N R R L R H H A H Q R P R H P R . . . . . . 183 CACGCCGTCCTCTACTTCGCGCTCATCACCATCTTCCTCATCGCCATCGGCGTCCACATC H A V L Y F A L I T I F L I A I G V H I T P S S T S R S S P S S S S P S A S T S P R R P L L R A H H H L P H R H R R P H . . . . . . 243 TACGCCGGCTAGCTAGAGTGTCTTCTAGTCCACACCCCCCTTCGTCTCTTCCTCTCATCA Y A G - L E C L L V H T P L R L F L S S T P A S - S V F - S T P P F V S S S H H L R R L A R V S S S P H P P S S L P L I . . . . . . 303 TCGGCCCCTGCTAGCTTCCTCGTCATGTACTACTAGTCTACTACTACTACTGGTCT S A P A S F L V M Y Y - S T T T T G R P L L A S S S C T T S L L L L L V I G P C - L P R H V L L V Y Y Y Y W S Maximal non-overlapping open reading frames (>= 64 codons): >13387479+_PGL-1_AGS-1_PPS_1 (53 316) (frame '0'; 261 bp, 87 residues) 1 LGPRGDRDGA VRAAHAGPAV PAAGARPNRR LRHHAHQRPR HPRPRRPLLR AHHHLPHRHR 61 RPHLRRLARV SSSPHPPSSL PLIIGPC- 3-phase translation of AGS-1 (-strand): . . . . . . 358 AGACCAGTAGTAGTAGTAGACTAGTAGTACATGACGAGGAAGCTAGCAGGGGCCGATGAT R P V V V V D - - Y M T R K L A G A D D D Q - - - - T S S T - R G S - Q G P M M T S S S S R L V V H D E E A S R G R - . . . . . . 298 GAGAGGAAGAGACGAAGGGGGGTGTGGACTAGAAGACACTCTAGCTAGCCGGCGTAGATG E R K R R R G V W T R R H S S - P A - M R G R D E G G C G L E D T L A S R R R C - E E E T K G G V D - K T L - L A G V D . . . . . . 238 TGGACGCCGATGGCGATGAGGAAGATGGTGATGAGCGCGAAGTAGAGGACGGCGTGGACG W T P M A M R K M V M S A K - R T A W T G R R W R - G R W - - A R S R G R R G R V D A D G D E E D G D E R E V E D G V D . . . . . . 178 AGGATGGCGAGGCCGCTGGTGTGCATGGTGCCGAAGCCGACGATTCGGCCGTGCGCCGGC R M A R P L V C M V P K P T I R P C A G G W R G R W C A W C R S R R F G R A P A E D G E A A G V H G A E A D D S A V R R . . . . . . 118 AGCTGGAACAGCAGGCCCGGCGTGAGCAGCACGAACAGCACCGTCGCGATCACCACGGGG S W N S R P G V S S T N S T V A I T T G A G T A G P A - A A R T A P S R S P R G Q L E Q Q A R R E Q H E Q H R R D H H G . . . . . . 58 CCCCAGTCAGCCATGGGCGCGACGACCTAGCTGTGGACCGATGACCACCTTCCTAT P Q S A M G A T T - L W T D D H L P P S Q P W A R R P S C G P M T T F L A P V S H G R D D L A V D R - P P S Y Maximal non-overlapping open reading frames (>= 64 codons): >13387479-_PGL-1_AGS-1_PPS_1 (254 15) (frame '0'; 237 bp, 79 residues) 1 LAGVDVDADG DEEDGDEREV EDGVDEDGEA AGVHGAEADD SAVRRQLEQQ ARREQHEQHR 61 RDHHGAPVSH GRDDLAVDR- ... finished at: Mon Nov 10 17:49:01 2003 ________________________________________________________________________________ Sequence 68: 13387599, from 1 to 563, both strands analyzed. ... started at: Mon Nov 10 17:49:01 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:01 2003 ________________________________________________________________________________ Sequence 69: 13388101, from 1 to 388, both strands analyzed. ... started at: Mon Nov 10 17:49:01 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:01 2003 ________________________________________________________________________________ Sequence 70: 13388744, from 1 to 379, both strands analyzed. ... started at: Mon Nov 10 17:49:01 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:01 2003 ________________________________________________________________________________ Sequence 71: 13390508, from 1 to 172, both strands analyzed. ... started at: Mon Nov 10 17:49:01 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:02 2003 ________________________________________________________________________________ Sequence 72: 13391099, from 1 to 503, both strands analyzed. ... started at: Mon Nov 10 17:49:02 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 3 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 ******************************************************************************** EST sequence 4 -strand (File: 5005989-) 1 GCACCAGAAT AACCGTGTCG TACGAGCGTG TGCAGAGGTG ACACGATTCA TGGACGACAT 61 GGCAGATTTC AAGAGAGGAA AGAACAAAAC CGATGTCGCC ACCACCGTGG AGTGCTACAT 121 GAAGGAGCAG AATGTCACGG GCGAGGTCGC CTTTGACAAG ATTGGGTCCT TTGTTGAGGA 181 CGCATGGAAG ACAATAAACC AAGCAGCACT CGTTGGGGAC CGTGCTCTGC TTCCGGTTGT 241 GCAACGAGTC GCCGGCCTCG CGATGAGCAT GATGGTGTTT TTCCACGGCA AGGTTGACCG 301 TTATACGGAC AGCGAGCACC TCAAGGAAAC GCTGGAAGAC CTGTTCGTCA ACCATGTTCC 361 CCTCTACTAG CTAGTACGCA CTAGCTAGCC GTGGCCGGAG TATATATATG GATTCCTTGC 421 CGTACGTACC ATCTTTGTGT GTGTGAAGGA TGTTGGTAAT AATACACAGA CCTTGGTAAA 481 TGGGACATGA GGATATGTAT CCACGTGTTG CATGGGAAAC CTATATATAT TATCTTGTCT 541 TAAAAAAAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 1 to 503): Exon 1 87 152 ( 66 n); cDNA 8 73 ( 66 n); score: 0.985 Intron 1 153 286 ( 134 n); Pd: 1.000 (s: 0.98), Pa: 0.977 (s: 1.00) Exon 2 287 503 ( 217 n); cDNA 74 290 ( 217 n); score: 1.000 PPA cDNA 542 563 MATCH 13391099+ 5005989- 0.996 283 0.563 G PGS_13391099+_5005989- (87 152,287 503) Alignment (genomic DNA sequence = upper lines): AATAACCGTG TCGTACGAGC GTGTGCAGAG GTCACACGAT TCATGGACGA CATGGCAGAT 146 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| AATAACCGTG TCGTACGAGC GTGTGCAGAG GTGACACGAT TCATGGACGA CATGGCAGAT 67 TTCAAGGTAC GTACGTACTA TGTATTCTTC ATTATTTACA TTGTAGCTGA GATCAAGCGC 206 |||||| TTCAAG.... .......... .......... .......... .......... .......... 73 CACCAAGATC GTTAATTGTC AACTAATTAA TCAGCTTCCT CTACATGTTT TTTTTCTATT 266 .......... .......... .......... .......... .......... .......... 73 GATGATTCCA TCATGTATAG AGAGGAAAGA ACAAAACCGA TGTCGCCACC ACCGTGGAGT 326 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... AGAGGAAAGA ACAAAACCGA TGTCGCCACC ACCGTGGAGT 113 GCTACATGAA GGAGCAGAAT GTCACGGGCG AGGTCGCCTT TGACAAGATT GGGTCCTTTG 386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTACATGAA GGAGCAGAAT GTCACGGGCG AGGTCGCCTT TGACAAGATT GGGTCCTTTG 173 TTGAGGACGC ATGGAAGACA ATAAACCAAG CAGCACTCGT TGGGGACCGT GCTCTGCTTC 446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGGACGC ATGGAAGACA ATAAACCAAG CAGCACTCGT TGGGGACCGT GCTCTGCTTC 233 CGGTTGTGCA ACGAGTCGCC GGCCTCGCGA TGAGCATGAT GGTGTTTTTC CACGGCA 503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CGGTTGTGCA ACGAGTCGCC GGCCTCGCGA TGAGCATGAT GGTGTTTTTC CACGGCA 290 hqPGS_13391099+_5005989- (87 152,287 503) ******************************************************************************** EST sequence 2 +strand (File: 5846944+) 1 GGAATTCCCC ACCAGCAGAT TTCAAGAGAG GAAAGAACAA AACCGATGTC GCCACCACCG 61 TGGAGTGCTA CATGAAGGAG CAGAATGTCA CGGGCGAGGT CGCCTTTGAC AAGATTGGGT 121 CCTTTGTTGA GGACGCATGG AAGACAATAA ACCAAGCAGC ACTCGTTGGG GACCGTGCTC 181 TGCTTCCGGT TGTGCAACGA GTCGCCGGCC TCGCGATGAG CATGATGGTG TTTTTCCACG 241 GCAAGGTTGA CCGTTATACG GACAGCGAGC ACCTCAAGGA AACGCTGGAA GACCTGTTCG 301 TCAACCATGT TCCCCTCTAC TAGCTAGTAC GCACTAGCTA GCCGTGGCCG GAGTATATAT 361 ATGGATTCCT TGCCGTACGT ACCATCTTTG TGTGTGTGAA GGATGTTGGT AATAATACAC 421 AGACCTTGGT AAATGGGACA TGAGGATATG TATCCACGTG TTGCATGGGA AACCTATATA 481 TATTATCTTG TCTTAATTTG TTCAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 1 to 503): Exon 1 287 503 ( 217 n); cDNA 27 243 ( 217 n); score: 1.000 PPA cDNA 504 521 MATCH 13391099+ 5846944+ 1.000 217 0.431 G PGS_13391099+_5846944+ (287 503) Alignment (genomic DNA sequence = upper lines): AGAGGAAAGA ACAAAACCGA TGTCGCCACC ACCGTGGAGT GCTACATGAA GGAGCAGAAT 346 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGAAAGA ACAAAACCGA TGTCGCCACC ACCGTGGAGT GCTACATGAA GGAGCAGAAT 86 GTCACGGGCG AGGTCGCCTT TGACAAGATT GGGTCCTTTG TTGAGGACGC ATGGAAGACA 406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCACGGGCG AGGTCGCCTT TGACAAGATT GGGTCCTTTG TTGAGGACGC ATGGAAGACA 146 ATAAACCAAG CAGCACTCGT TGGGGACCGT GCTCTGCTTC CGGTTGTGCA ACGAGTCGCC 466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAACCAAG CAGCACTCGT TGGGGACCGT GCTCTGCTTC CGGTTGTGCA ACGAGTCGCC 206 GGCCTCGCGA TGAGCATGAT GGTGTTTTTC CACGGCA 503 |||||||||| |||||||||| |||||||||| ||||||| GGCCTCGCGA TGAGCATGAT GGTGTTTTTC CACGGCA 243 hqPGS_13391099+_5846944+ (287 503) ******************************************************************************** EST sequence 1 +strand (File: 5296322+) 1 AAACCGATGT CGCCACCACC GTGGAGTGCT ACATGAAGGA GCAGAATGTC ACGGGCGAGG 61 TCGCCTTTGA CAAGATTGGG TCCTTTGTTG AGGACGCATG GAAGACAATA AACCAAGCAG 121 CACTCGNTGG GGACCGTGCT CTGCTTNCGG TTGTGCAACG AGTCGCCGGC CTCGCGATGA 181 GCATGATGGT GTTTTTCCAC GGCAAGGTTG ACCGTTATAC GGACAGCGAG CACCTCAAGG 241 AAACGCTGGA AGACCTGTTC GTCAACCATG TTCCCCTCTA CTAGCTAGTA CGCACTAGCT 301 AGCCGTGGCC GGAGTATATA TATGGATTCC TTGCCGTACG TACCATCTTT GTGTGTGTGA 361 AGGATGTTGG TAATAATACA CAGACCTTGG TAAATGGGAC ATGAGGATAT GTATCCACGT 421 GTTGCATGGG AAACCTATAT ATATTATCTT GTCTTAATT Predicted gene structure (within gDNA segment 1 to 503): Exon 1 300 503 ( 204 n); cDNA 1 204 ( 204 n); score: 0.990 MATCH 13391099+ 5296322+ 0.990 204 0.444 C PGS_13391099+_5296322+ (300 503) Alignment (genomic DNA sequence = upper lines): AAACCGATGT CGCCACCACC GTGGAGTGCT ACATGAAGGA GCAGAATGTC ACGGGCGAGG 359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCGATGT CGCCACCACC GTGGAGTGCT ACATGAAGGA GCAGAATGTC ACGGGCGAGG 60 TCGCCTTTGA CAAGATTGGG TCCTTTGTTG AGGACGCATG GAAGACAATA AACCAAGCAG 419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCTTTGA CAAGATTGGG TCCTTTGTTG AGGACGCATG GAAGACAATA AACCAAGCAG 120 CACTCGTTGG GGACCGTGCT CTGCTTCCGG TTGTGCAACG AGTCGCCGGC CTCGCGATGA 479 |||||| ||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| CACTCGNTGG GGACCGTGCT CTGCTTNCGG TTGTGCAACG AGTCGCCGGC CTCGCGATGA 180 GCATGATGGT GTTTTTCCAC GGCA 503 |||||||||| |||||||||| |||| GCATGATGGT GTTTTTCCAC GGCA 204 hqPGS_13391099+_5296322+ (300 503) ******************************************************************************** EST sequence 3 +strand (File: 6031491+) 1 GCACCAGGCC ACCACCGTGG AGTGCTACAT GAAGGAGCAG AATGTCACGG GCGAGGTCGC 61 CTTTGACAAG ATTGGGTCCT TTGTTGAGGA CGCATGGAAG ACAATAAACC AAGCAGCACT 121 CGTTGGGGAC CGTGCTCTGC TTCCGGTTGT GCAACGAGTC GCCGGCCTCG CGATGAGCAT 181 GATGGTGTTT TTNCACGGCA AGGTTGACCG TTATACGGAC AGCGAGCACC TCAAGGAAAC 241 GCTGGAAGAC CTGTTCGTCA ACCATGTTCC CCTCTACTAG CTAGTACGCA CTAGCTAGCC 301 GTGGCCGGAG TATATATATG GATTCCTTGC CGTACGTACC ATCTTTGTGT GTGTGAAGGA 361 TGTTGGTAAT AATACACAGA CCTTGGTAAA TGGGACATGA GGATATGTAT CCACGTGTTG 421 CATGGGAAAC CTATATATAT TATCTTGTCT TAATTTGTTC TTATGTATCT CCATGTATTT 481 TGTGTTCTAT TGATATCATT CTTAAACTCA TAATGGAGAG CTAGATTATC CTTTGGCATG 541 CTAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 1 to 503): Exon 1 311 503 ( 193 n); cDNA 8 200 ( 193 n); score: 0.995 PPA cDNA 543 576 MATCH 13391099+ 6031491+ 0.995 193 0.384 G PGS_13391099+_6031491+ (311 503) Alignment (genomic DNA sequence = upper lines): GCCACCACCG TGGAGTGCTA CATGAAGGAG CAGAATGTCA CGGGCGAGGT CGCCTTTGAC 370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCACCACCG TGGAGTGCTA CATGAAGGAG CAGAATGTCA CGGGCGAGGT CGCCTTTGAC 67 AAGATTGGGT CCTTTGTTGA GGACGCATGG AAGACAATAA ACCAAGCAGC ACTCGTTGGG 430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTGGGT CCTTTGTTGA GGACGCATGG AAGACAATAA ACCAAGCAGC ACTCGTTGGG 127 GACCGTGCTC TGCTTCCGGT TGTGCAACGA GTCGCCGGCC TCGCGATGAG CATGATGGTG 490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCGTGCTC TGCTTCCGGT TGTGCAACGA GTCGCCGGCC TCGCGATGAG CATGATGGTG 187 TTTTTCCACG GCA 503 ||||| |||| ||| TTTTTNCACG GCA 200 hqPGS_13391099+_6031491+ (311 503) Total number of EST alignments reported: 4 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 503: PGL 1 (+ strand): 87 503 AGS-1 (87 152,287 503) SCR (e 0.985 d 1.000 a 0.977,e 1.000) Exon 1 87 152 ( 66 n); score: 0.985 Intron 1 153 286 ( 134 n); Pd: 1.000 Pa: 0.977 Exon 2 287 503 ( 217 n); score: 1.000 PGS (87 152,287 503) 5005989- PGS (287 503) 5846944+ PGS (300 503) 5296322+ PGS (311 503) 6031491+ 3-phase translation of AGS-1 (+strand): . . . . . . 87 AATAACCGTGTCGTACGAGCGTGTGCAGAGGTCACACGATTCATGGACGACATGGCAGAT N N R V V R A C A E V T R F M D D M A D I T V S Y E R V Q R S H D S W T T W Q I - P C R T S V C R G H T I H G R H G R . : . . . . . 147 TTCAAG : AGAGGAAAGAACAAAACCGATGTCGCCACCACCGTGGAGTGCTACATGAAGGAG F K : R G K N K T D V A T T V E C Y M K E S R : E E R T K P M S P P P W S A T - R S F Q : E R K E Q N R C R H H R G V L H E G . . . . . . 341 CAGAATGTCACGGGCGAGGTCGCCTTTGACAAGATTGGGTCCTTTGTTGAGGACGCATGG Q N V T G E V A F D K I G S F V E D A W R M S R A R S P L T R L G P L L R T H G A E C H G R G R L - Q D W V L C - G R M . . . . . . 401 AAGACAATAAACCAAGCAGCACTCGTTGGGGACCGTGCTCTGCTTCCGGTTGTGCAACGA K T I N Q A A L V G D R A L L P V V Q R R Q - T K Q H S L G T V L C F R L C N E E D N K P S S T R W G P C S A S G C A T . . . . . 461 GTCGCCGGCCTCGCGATGAGCATGATGGTGTTTTTCCACGGCA V A G L A M S M M V F F H G S P A S R - A - W C F S T A S R R P R D E H D G V F P R Maximal non-overlapping open reading frames (>= 64 codons): >13391099+_PGL-1_AGS-1_PPS_1 (87 152,287 502) (frame '1'; 282 bp, 94 residues) 1 NNRVVRACAE VTRFMDDMAD FKRGKNKTDV ATTVECYMKE QNVTGEVAFD KIGSFVEDAW 61 KTINQAALVG DRALLPVVQR VAGLAMSMMV FFHG ... finished at: Mon Nov 10 17:49:03 2003 ________________________________________________________________________________ Sequence 73: 13391816, from 1 to 267, both strands analyzed. ... started at: Mon Nov 10 17:49:03 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: 12046896-) 1 TATATAAGTT ATCGTAGTAT ACTAGTATTA TATATTCCTG TTGCAACGCA TGGGCATTCA 61 GCTAGTTATT ACAAACATGT CTAAGGTGCT GTCCTGATTT TTTGCCCGAC AGCCCCACTA 121 CCGGGTAACT TTATTACAAG CATGTCGTGC TCGTGCCACG AGAGAGCAAT GAAGCGCAGC 181 CAGGGATATT GCTAACACCG TACACTCCCC TACGTACAGT ACAGATCATT CAAGCAGCGC 241 CTCAAAACAT AGTCCACTTA AGGCCCTGTT CGGTTGTTCC GGATTGGAGC CCTGGATTAA 301 TTCATAGTCG GATTACTTCT CTAATTAAAA AAAAAATTTG ATGAGCTGAA ATGAATCCTG 361 GCTCGTTCCG GTACAACCGA ACAGGCCCTA ATAGTCTGTG CACCCACTGA TTATTCACGA 421 ACAAAAACTT ACAGATCCAA CACTAGCACT AATACGATTC AGTGTGTAAC GCCGTAACAT 481 ATATATATAT TGGTAACGAG AACTCTGGCA Predicted gene structure (within gDNA segment 267 to 1): Exon 1 188 57 ( 132 n); cDNA 259 391 ( 133 n); score: 0.871 MATCH 13391816- 12046896- 0.871 132 0.494 G PGS_13391816-_12046896- (188 57) Alignment (genomic DNA sequence = upper lines): TAAGGCCCTG TTTGGTTGTT CCGGATTGGA GCCCCGGATT AATTCCTAGC CGGATTACTT 129 |||||||||| || ||||||| |||||||||| |||| ||||| ||||| ||| |||||||||| TAAGGCCCTG TTCGGTTGTT CCGGATTGGA GCCCTGGATT AATTCATAGT CGGATTACTT 318 CTCTAATT-T ATATAGATTT TGATGAGCTG GAATGAATCC TGCCTTATTC CGGTATAACC 70 |||||||| | | | | || |||||||||| ||||||||| || || ||| ||||| |||| CTCTAATTAA AAAAAAAATT TGATGAGCTG AAATGAATCC TGGCTCGTTC CGGTACAACC 378 GAACGGGCCC TAA 57 |||| ||||| ||| GAACAGGCCC TAA 391 hqPGS_13391816-_12046896- (188 57) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 267: PGL 1 (- strand): 188 57 AGS-1 (188 57) SCR (e 0.871) Exon 1 188 57 ( 132 n); score: 0.871 PGS (188 57) 12046896- 3-phase translation of AGS-1 (-strand): . . . . . . 188 TAAGGCCCTGTTTGGTTGTTCCGGATTGGAGCCCCGGATTAATTCCTAGCCGGATTACTT - G P V W L F R I G A P D - F L A G L L K A L F G C S G L E P R I N S - P D Y F R P C L V V P D W S P G L I P S R I T . . . . . . 128 CTCTAATTTATATAGATTTTGATGAGCTGGAATGAATCCTGCCTTATTCCGGTATAACCG L - F I - I L M S W N E S C L I P V - P S N L Y R F - - A G M N P A L F R Y N R S L I Y I D F D E L E - I L P Y S G I T . . 68 AACGGGCCCTAA N G P - T G P E R A L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 57 TTAGGGCCCGTTCGGTTATACCGGAATAAGGCAGGATTCATTCCAGCTCATCAAAATCTA L G P V R L Y R N K A G F I P A H Q N L - G P F G Y T G I R Q D S F Q L I K I Y R A R S V I P E - G R I H S S S S K S . . . . . . 117 TATAAATTAGAGAAGTAATCCGGCTAGGAATTAATCCGGGGCTCCAATCCGGAACAACCA Y K L E K - S G - E L I R G S N P E Q P I N - R S N P A R N - S G A P I R N N Q I - I R E V I R L G I N P G L Q S G T T . . 177 AACAGGGCCTTA N R A L T G P K Q G L Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:03 2003 ________________________________________________________________________________ Sequence 74: 13393561, from 1 to 111, both strands analyzed. ... started at: Mon Nov 10 17:49:03 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:03 2003 ________________________________________________________________________________ Sequence 75: 13393563, from 1 to 292, both strands analyzed. ... started at: Mon Nov 10 17:49:03 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 440695+) 1 NCACATCTCC TCGCATTTNT TCCCATCCNA TCCCCCCTTC GCAACCCAAA CCCCAACTCG 61 CCCCGCATCG ATGGCGCCCA AGGCCGAGAA GAAGCCCGCG GCGAAGAAGC CGGCGGAGGA 121 GGAGCCCGCG GCCGAGAAGG CGCCCGCCGG AAAGAAGCCG AAGGNANGAA GCGGGTCCCC 181 GCTGGCAAGT CCGCTTCCAA GGAGGGCGGC GAGGGCAAGA GGAGCAGGAA GAAGGGCAAG 241 AAGAGCGTGG AGACCTNCAA GATCTACATC TTCAAGGTGC TGAAGCAGGT GCACCCGGAC 301 ATTGGCATAT CCTCCAAGGC CATGTCGNTC ATGAACTCCT TCATTAACGA TATCTTCG Predicted gene structure (within gDNA segment 1 to 292): Exon 1 92 221 ( 130 n); cDNA 230 358 ( 129 n); score: 0.831 MATCH 13393563+ 440695+ 0.831 130 0.445 G PGS_13393563+_440695+ (92 221) Alignment (genomic DNA sequence = upper lines): AGAAGTGAGC CTGATACGCG -GGAGGGACG AAAGATCTAC ATCTTCAAGG TGCTGAAGCA 150 ||||| | || || ||| |||| ||||||||| |||||||||| |||||||||| AGAAG-G-GC AAGAAGAGCG TGGAGACCTN CAAGATCTAC ATCTTCAAGG TGCTGAAGCA 287 GGTGCACCCG GACATCGGCA TCTCCTCCAA GGCCATGTCC ATTATGAACT CCTTCATCAA 210 |||||||||| ||||| |||| | |||||||| ||||||||| | ||||||| ||||||| || GGTGCACCCG GACATTGGCA TATCCTCCAA GGCCATGTCG NTCATGAACT CCTTCATTAA 347 CGACATCTTC G 221 ||| |||||| | CGATATCTTC G 358 hqPGS_13393563+_440695+ (92 221) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 292: PGL 1 (+ strand): 92 221 AGS-1 (92 221) SCR (e 0.831) Exon 1 92 221 ( 130 n); score: 0.831 PGS (92 221) 440695+ 3-phase translation of AGS-1 (+strand): . . . . . . 92 AGAAGTGAGCCTGATACGCGGGAGGGACGAAAGATCTACATCTTCAAGGTGCTGAAGCAG R S E P D T R E G R K I Y I F K V L K Q E V S L I R G R D E R S T S S R C - S R K - A - Y A G G T K D L H L Q G A E A . . . . . . 152 GTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATTATGAACTCCTTCATCAAC V H P D I G I S S K A M S I M N S F I N C T R T S A S P P R P C P L - T P S S T G A P G H R H L L Q G H V H Y E L L H Q . 212 GACATCTTCG D I F T S S R H L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 221 CGAAGATGTCGTTGATGAAGGAGTTCATAATGGACATGGCCTTGGAGGAGATGCCGATGT R R C R - - R S S - W T W P W R R C R C E D V V D E G V H N G H G L G G D A D V K M S L M K E F I M D M A L E E M P M . . . . . . 161 CCGGGTGCACCTGCTTCAGCACCTTGAAGATGTAGATCTTTCGTCCCTCCCGCGTATCAG P G A P A S A P - R C R S F V P P A Y Q R V H L L Q H L E D V D L S S L P R I R S G C T C F S T L K M - I F R P S R V S . 101 GCTCACTTCT A H F L T S G S L Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:04 2003 ________________________________________________________________________________ Sequence 76: 16806117, from 1 to 352, both strands analyzed. ... started at: Mon Nov 10 17:49:04 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:04 2003 ________________________________________________________________________________ Sequence 77: 16806450, from 1 to 471, both strands analyzed. ... started at: Mon Nov 10 17:49:04 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:04 2003 ________________________________________________________________________________ Sequence 78: 16806555, from 1 to 81, both strands analyzed. ... started at: Mon Nov 10 17:49:04 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:05 2003 ________________________________________________________________________________ Sequence 79: 16806719, from 1 to 229, both strands analyzed. ... started at: Mon Nov 10 17:49:05 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:05 2003 ________________________________________________________________________________ Sequence 80: 16806905, from 1 to 129, both strands analyzed. ... started at: Mon Nov 10 17:49:05 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 4647258+) 1 TTTTAATAAC ATTTAGCCCA CGTTAAAAAG GCTAAAATAG CAAATTTTTC GTGCTACTAC 61 TGCTACAAAG CGACAGAAAC CCATCACACG CACACGCACA CGCACACGGG CGACACTGGA 121 CAGTCCGGGA CGATCCAGAC CCTGACCAAG AAGCACTCAC GGTCGCACAG TCTCCCGAAG 181 CAGTTTCGGA AGACACGAAC GACTCTTCAA AAAAAAAAAA AGTCTGAAAC GACTACTACT 241 CCACGACTAT CTGAGTCTCC AAGGGTTCGG CGGAAGCATC CACCAGCTTC TTCACCTCGT 301 CTGGGTTCGC CCCGACGATC TTCCCCACCA CCTCCTTGCT CTTGATGAGG AAGAACGTCG 361 GCATGGCCTT CACTCCGTAC CTGGATGAAA CACTCTGGAC ATCGTCGACG TCCACGTAGA 421 GGAACAAGAC CTCGGGGTGG GTCTGCGCTA GCTCCTCAAA CTTGTAGTTC ATGGACAGGG 481 ACGTCACGCA CCATGA Predicted gene structure (within gDNA segment 1 to 129): Exon 1 4 66 ( 63 n); cDNA 434 496 ( 63 n); score: 1.000 MATCH 16806905+ 4647258+ 1.000 63 0.488 G PGS_16806905+_4647258+ (4 66) Alignment (genomic DNA sequence = upper lines): GGGGTGGGTC TGCGCTAGCT CCTCAAACTT GTAGTTCATG GACAGGGACG TCACGCACCA 63 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTGGGTC TGCGCTAGCT CCTCAAACTT GTAGTTCATG GACAGGGACG TCACGCACCA 493 TGA 66 ||| TGA 496 hqPGS_16806905+_4647258+ (4 66) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 129: PGL 1 (+ strand): 4 66 AGS-1 (4 66) SCR (e 1.000) Exon 1 4 66 ( 63 n); score: 1.000 PGS (4 66) 4647258+ 3-phase translation of AGS-1 (+strand): . . . . . . 4 GGGGTGGGTCTGCGCTAGCTCCTCAAACTTGTAGTTCATGGACAGGGACGTCACGCACCA G V G L R - L L K L V V H G Q G R H A P G W V C A S S S N L - F M D R D V T H H G G S A L A P Q T C S S W T G T S R T . 64 TGA - M Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 66 TCATGGTGCGTGACGTCCCTGTCCATGAACTACAAGTTTGAGGAGCTAGCGCAGACCCAC S W C V T S L S M N Y K F E E L A Q T H H G A - R P C P - T T S L R S - R R P T M V R D V P V H E L Q V - G A S A D P . 6 CCC P P Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:05 2003 ________________________________________________________________________________ Sequence 81: 16807013, from 1 to 72, both strands analyzed. ... started at: Mon Nov 10 17:49:05 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:05 2003 ________________________________________________________________________________ Sequence 82: 16807083, from 1 to 206, both strands analyzed. ... started at: Mon Nov 10 17:49:05 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:06 2003 ________________________________________________________________________________ Sequence 83: 16807115, from 1 to 532, both strands analyzed. ... started at: Mon Nov 10 17:49:06 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 4 ******************************************************************************** EST sequence 1 +strand (File: 9952258+) 1 CTCTTCCCTC TGTTCCCGTC TCCCCCGGCC TCTCTCGGCA AGTCGGCATC CGTCCTCGAT 61 CCACGCTCAG CTCGCCTAAG GACTAAGCCA TCAGCGTTCA GCGATGAGCC GGGGCAGCAG 121 CAACGGCGGC GTGAGGAGCG CCGCCAGGCT GGAGGAGCTG CAGCTGGACC TGTCCCCGCC 181 CCCGGTGGGG ATGGAGGTGG ACGGCGCCGG GGGCGTCCAC GGCGACAGCG ACTCGTCGTC 241 GTCGTCGTCG CCGAGCTCGT GCGTGTCGTC GGACGGGCGG AGCTCGAGCG GCGGCGGCGG 301 CAGCAGCCCC GGGGGCAGTA AGTCGCCGAT GGTGATCGGC GCCTGCACGC GGTGCCTCAT 361 GTACTGCATG GTGGCCAAGA AGGACTACCC GACCTGCGTC AACTGCAAGC AGCCGTGCCT 421 GGTGGACCTG CTCCACGGCG AGGCCGGCCG TGTT Predicted gene structure (within gDNA segment 1 to 532): Exon 1 1 85 ( 85 n); cDNA 204 282 ( 79 n); score: 0.612 Intron 1 86 116 ( 31 n); Pd: 0.000 (s: 0.62), Pa: 0.000 (s: 0.65) Exon 2 117 277 ( 161 n); cDNA 283 446 ( 164 n); score: 0.820 MATCH 16807115+ 9952258+ 0.748 246 0.542 C PGS_16807115+_9952258+ (1 85,117 277) Alignment (genomic DNA sequence = upper lines): GCAGCAGGGG CGGCGCGAGG TTCGAGCTGC AGCGTGCACC TGTCGCCGCC GCCGCCG-GC 59 || | |||| || | | | | ||| | || | | | | |||| || | | ||||| || GCGCCGGGGG CGTC-C-ACG -GCGA-CAGC -GACT-CGTC -GTCGTCGTC GTCGCCGAGC 256 TAGGAGGGTG GAGGTGGAC- GGCGGAGGCG ACGGCAGCGA CTCGTCGTCG TCCCCGAGCT 118 | | | ||| | |||| ||||||| || T-CGTGCGTG TCGTCGGACG GGCGGAG... .......... .......... ........CT 284 CGTGCG-TGT CGTCGGACGG CAGCC-C-AG GG-AGCAAGT CGCCGATGGT GATCGGCGCC 174 || ||| | || ||| | | ||||| | | || || |||| |||||||||| |||||||||| CGAGCGGCGG CGGCGG-CAG CAGCCCCGGG GGCAGTAAGT CGCCGATGGT GATCGGCGCC 343 TGCACGCGGT GCATGATGTA CTGCATGGTG GCCAAGAAGG ACTTCCCCAC CTGCATCAAC 234 |||||||||| || | ||||| |||||||||| |||||||||| ||| ||| || |||| ||||| TGCACGCGGT GCCTCATGTA CTGCATGGTG GCCAAGAAGG ACTACCCGAC CTGCGTCAAC 403 TGCAAGCAGC CCTGCCTCGT GGACCTCCTC CACTGCTCTG GCG 277 |||||||||| | ||||| || |||||| ||| ||| || | || TGCAAGCAGC CGTGCCTGGT GGACCTGCTC CACGGCGAGG CCG 446 hqPGS_16807115+_9952258+ (117 277) ******************************************************************************** EST sequence 2 -strand (File: 8665787-) 1 CGTGTCGTCG GACGGGCGGA GCTCGAGCGG CGGCGGCGGC AGCAGCCCCG GGGGCAGTAA 61 GTCGCCGATG GTGATCGGCG CCTGCACGCG GTGCCTCATG TACTGCATGG TGGCCAAGAA 121 GGACTACCCG ACCTGCGTCA ACTGCAAGCA GCCGTGCCTG GTGGACCTGC TCCACGGCGA 181 GGCCGGCCGT GTTGGTGGCG GCGCCAGGCA GGCCGCCGCC GCCGCTGACG ACGACGACAA 241 GAAGAAGCAG GTGCACCGCC GTAAGCGCAG GTGAAGTGAG GCCGCCGTAA GAAGCTGGTG 301 GTGGTGCCCG TGCCCGTGCC CGTGCCCGCG CCGCGCGCCC AGTGGATGCT CATACGGAGG 361 GTCAGCTAAG CTAGCTAGCT AGCTAGCTAG CCCGGCGAAG GGCGAACTGA CTGACTGCCG 421 TTGGATCATC CACTGGACAG CTAGCCCGCA GGGTGTTAGG ATCGGAGGAG CTAAAGATAG 481 CTATTAGTAC GTGTAGCAGC AGCTTAGTTC ACTCGATGGA TGCTGCTGCT GTTGGAGTAG 541 GTGGTTGTTG TCATGGTGAG CCGTGAGCGT GGGGACGTGG GGTTATGTGT GGTGGACTGG 601 AGACTTGTGG TTGTTGCAAT GTA Predicted gene structure (within gDNA segment 1 to 532): Exon 1 148 294 ( 147 n); cDNA 56 202 ( 147 n); score: 0.857 MATCH 16807115+ 8665787- 0.857 147 0.276 G PGS_16807115+_8665787- (148 294) Alignment (genomic DNA sequence = upper lines): AGCAAGTCGC CGATGGTGAT CGGCGCCTGC ACGCGGTGCA TGATGTACTG CATGGTGGCC 207 || ||||||| |||||||||| |||||||||| ||||||||| | |||||||| |||||||||| AGTAAGTCGC CGATGGTGAT CGGCGCCTGC ACGCGGTGCC TCATGTACTG CATGGTGGCC 115 AAGAAGGACT TCCCCACCTG CATCAACTGC AAGCAGCCCT GCCTCGTGGA CCTCCTCCAC 267 |||||||||| ||| ||||| | |||||||| |||||||| | |||| ||||| ||| |||||| AAGAAGGACT ACCCGACCTG CGTCAACTGC AAGCAGCCGT GCCTGGTGGA CCTGCTCCAC 175 TGCTCTGGCG CCGGCGGCAG CGGCGGC 294 || | || | | | | |||||| GGCGAGGCCG GCCGTGTTGG TGGCGGC 202 hqPGS_16807115+_8665787- (148 294) ******************************************************************************** EST sequence 5 -strand (File: 9742584-) 1 AAGAAGCAGG TGCACCGCCG TAAGCGCAGG TGAAGTGAGG CCGCCGTAAG AAGCTGGTGG 61 TGGTGCCCGT GCCCGTGCCC GTGCCCGCGC CGCGCGCCCA GTGGATGCTC ATACGGAGGG 121 TCAGCTAAGC TAGCTAGCTA GCTAGCTAGC CCGGCGAAGG GCGAACTGAC TGACTGCCGT 181 TGGATCATCC ACTGGACAGC TAGCCCGCAG GGTGTTAGGA TCGGAGGAGA TAAAGCTAGC 241 TATTAGTACG TGTAGCAGCA GCTTAGTTCA CTCGATGGAT GCTGCTGCTG TTGGAGTAGG 301 TGGTTGTTGT CATGGTGAGC CGTGAGCGTG GGGACGTGGG GTTATGTGTG GTGGACTGGA 361 GACTTGTGGT TGTTGCAATG TATCGTACTC CACCTATCCC CGCT Predicted gene structure (within gDNA segment 1 to 532): Exon 1 329 531 ( 203 n); cDNA 80 265 ( 186 n); score: 0.640 MATCH 16807115+ 9742584- 0.640 203 0.502 C PGS_16807115+_9742584- (329 531) Alignment (genomic DNA sequence = upper lines): CGTACCCCGG CCGTCGGTCC AGTTGATGCT CATACGGATG GTTAGCTCAG ACCTTAGCTT 388 ||| ||| | ||| | || ||| |||||| |||||||| | || |||| | | | ||||| CGTGCCCGCG CCGCGCGCCC AGTGGATGCT CATACGGAGG GTCAGCT-A- AGC-TAGCTA 136 GTGGGCTTTG TGCGCTCATC TCGAGGCGCG GTGGGGGAGT GACCGCCGTT GGATCATCCA 448 | || | | || | ||| | || | || | ||| |||||| |||||||||| GCTAGC-TAG CTAGC-C-CG GCGAAGGGC- G-AACTGACT GACTGCCGTT GGATCATCCA 191 CTGGATGGAC ATGGCCTACT TGGT-TTAGT AATAGGCTAG TGTAGTACTC CCCCTATTAG 507 ||||| | | | ||| | ||| |||| || || || | | | ||||||| CTGGACAG-C -TAGCCCGCA GGGTGTTAG- GATCGG--AG GAGATAAAGC TAGCTATTAG 246 CTAGCTGCTG ATGCTATTAG CTTA 531 || | | || || | || |||| -TA-C-G-TG TAGC-AGCAG CTTA 265 hqPGS_16807115+_9742584- (329 531) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 532: PGL 1 (+ strand): 117 531 AGS-1 (117 294) SCR (e 0.857) Exon 1 117 294 ( 178 n); score: 0.857 PGS (117 277) 9952258+ PGS (148 294) 8665787- 3-phase translation of AGS-1 (+strand): . . . . . . 117 CTCGTGCGTGTCGTCGGACGGCAGCCCAGGGAGCAAGTCGCCGATGGTGATCGGCGCCTG L V R V V G R Q P R E Q V A D G D R R L S C V S S D G S P G S K S P M V I G A C R A C R R T A A Q G A S R R W - S A P . . . . . . 177 CACGCGGTGCATGATGTACTGCATGGTGGCCAAGAAGGACTTCCCCACCTGCATCAACTG H A V H D V L H G G Q E G L P H L H Q L T R C M M Y C M V A K K D F P T C I N C A R G A - C T A W W P R R T S P P A S T . . . . . . 237 CAAGCAGCCCTGCCTCGTGGACCTCCTCCACTGCTCTGGCGCCGGCGGCAGCGGCGGC Q A A L P R G P P P L L W R R R Q R R K Q P C L V D L L H C S G A G G S G G A S S P A S W T S S T A L A P A A A A Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 294 GCCGCCGCTGCCGCCGGCGCCAGAGCAGTGGAGGAGGTCCACGAGGCAGGGCTGCTTGCA A A A A A G A R A V E E V H E A G L L A P P L P P A P E Q W R R S T R Q G C L Q R R C R R R Q S S G G G P R G R A A C . . . . . . 234 GTTGATGCAGGTGGGGAAGTCCTTCTTGGCCACCATGCAGTACATCATGCACCGCGTGCA V D A G G E V L L G H H A V H H A P R A L M Q V G K S F L A T M Q Y I M H R V Q S - C R W G S P S W P P C S T S C T A C . . . . . . 174 GGCGCCGATCACCATCGGCGACTTGCTCCCTGGGCTGCCGTCCGACGACACGCACGAG G A D H H R R L A P W A A V R R H A R A P I T I G D L L P G L P S D D T H E R R R S P S A T C S L G C R P T T R T Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (329 531) SCR (e 0.640) Exon 1 329 531 ( 203 n); score: 0.640 PGS (329 531) 9742584- 3-phase translation of AGS-2 (+strand): . . . . . . 329 CGTACCCCGGCCGTCGGTCCAGTTGATGCTCATACGGATGGTTAGCTCAGACCTTAGCTT R T P A V G P V D A H T D G - L R P - L V P R P S V Q L M L I R M V S S D L S L Y P G R R S S - C S Y G W L A Q T L A . . . . . . 389 GTGGGCTTTGTGCGCTCATCTCGAGGCGCGGTGGGGGAGTGACCGCCGTTGGATCATCCA V G F V R S S R G A V G E - P P L D H P W A L C A H L E A R W G S D R R W I I H C G L C A L I S R R G G G V T A V G S S . . . . . . 449 CTGGATGGACATGGCCTACTTGGTTTAGTAATAGGCTAGTGTAGTACTCCCCCTATTAGC L D G H G L L G L V I G - C S T P P I S W M D M A Y L V - - - A S V V L P L L A T G W T W P T W F S N R L V - Y S P Y - . . . 509 TAGCTGCTGATGCTATTAGCTTA - L L M L L A S C - C Y - L L A A D A I S L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 531 TAAGCTAATAGCATCAGCAGCTAGCTAATAGGGGGAGTACTACACTAGCCTATTACTAAA - A N S I S S - L I G G V L H - P I T K K L I A S A A S - - G E Y Y T S L L L N S - - H Q Q L A N R G S T T L A Y Y - . . . . . . 471 CCAAGTAGGCCATGTCCATCCAGTGGATGATCCAACGGCGGTCACTCCCCCACCGCGCCT P S R P C P S S G - S N G G H S P T A P Q V G H V H P V D D P T A V T P P P R L T K - A M S I Q W M I Q R R S L P H R A . . . . . . 411 CGAGATGAGCGCACAAAGCCCACAAGCTAAGGTCTGAGCTAACCATCCGTATGAGCATCA R D E R T K P T S - G L S - P S V - A S E M S A Q S P Q A K V - A N H P Y E H Q S R - A H K A H K L R S E L T I R M S I . . . 351 ACTGGACCGACGGCCGGGGTACG T G P T A G V L D R R P G Y N W T D G R G T Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:07 2003 ________________________________________________________________________________ Sequence 84: 16807334, from 1 to 182, both strands analyzed. ... started at: Mon Nov 10 17:49:07 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 14244601+) 1 ACGGCACCAG CAGCACCACC CAGTTAACCA CCACGCCTCT CTCTCTCTCT CTCTTACCGG 61 GAAGCAAGCA ACCGCCTCCG CCGCGCCGTC TCGGGCTCGC TTGGTGCAGA TCGGGACCCG 121 CCGCCCGGCC GACGGGACGG ATCCCGCCTT GCATCAAGTG AATCGGAGCC GGCGCAGCGA 181 TACAGCGACC GACCCCCGCC GCCGTCCGCC ACCTGCGCTG CTCTTGAGTA CCCCCCATGC 241 CGTGGCCTGC TTGTTGCGTG TTTTTTTGTT TTTCTGATAC GGGTCGTGCG CGTGTTGCTG 301 TGGTTCTGTC TTGTGTGACG CCGTGGGAAT TATTAGGCGT CGTGGGGGGT GAGGGGGTCT 361 CTGCTCTAGA TTAAACAACC CGGATCTGGA TCTGACGCGT GGTTTCCGTA GTTTGATCCG 421 ACGTAGTCTG GGTGACTACG TTCTGGTGGT TTACCATGAT CCATCCCTAT ATCCGCTAGA 481 CTCTGCTAGT CTGCTTTA Predicted gene structure (within gDNA segment 1 to 182): Exon 1 6 39 ( 34 n); cDNA 3 36 ( 34 n); score: 0.882 Intron 1 40 74 ( 35 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.98) Exon 2 75 182 ( 108 n); cDNA 37 143 ( 107 n); score: 0.981 MATCH 16807334+ 14244601+ 0.981 142 0.780 G PGS_16807334+_14244601+ (6 39,75 182) Alignment (genomic DNA sequence = upper lines): GGCACCAGCA CCACCACCCA GCTACCCACC AAGCAGCAGC GGCGCCGTGC GTGCCACGCC 65 |||||||||| ||||||||| | || ||||| | || GGCACCAGCA GCACCACCCA GTTAACCACC ACGC...... .......... .......... 36 TCTCGCTCTC TCTCTCTCTC TCTCTCTATA CCGGGAAGCA AGCAACCGCC TCCGCCGCGC 125 | |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| .........C TCTCTCTCTC TCTCTCT-TA CCGGGAAGCA AGCAACCGCC TCCGCCGCGC 86 CGTCTCGGGC TCGCTTGGTG CAGATCGGGA CCCGCCGCCC GCCCGACGGG ACGGATC 182 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| ||||||| CGTCTCGGGC TCGCTTGGTG CAGATCGGGA CCCGCCGCCC GGCCGACGGG ACGGATC 143 hqPGS_16807334+_14244601+ (6 39,75 182) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 182: PGL 1 (+ strand): 6 182 AGS-1 (6 39,75 182) SCR (e 0.882 d 0.000 a 0.000,e 0.981) Exon 1 6 39 ( 34 n); score: 0.882 Intron 1 40 74 ( 35 n); Pd: 0.000 Pa: 0.000 Exon 2 75 182 ( 108 n); score: 0.981 PGS (6 39,75 182) 14244601+ 3-phase translation of AGS-1 (+strand): . . . . : . . 6 GGCACCAGCACCACCACCCAGCTACCCACCAAGC : CTCTCTCTCTCTCTCTCTATACCGGG G T S T T T Q L P T K : P L S L S L Y T G A P A P P P S Y P P S : L S L S L S I P G H Q H H H P A T H Q A : S L S L S L Y R . . . . . . 101 AAGCAAGCAACCGCCTCCGCCGCGCCGTCTCGGGCTCGCTTGGTGCAGATCGGGACCCGC K Q A T A S A A P S R A R L V Q I G T R S K Q P P P P R R L G L A W C R S G P A E A S N R L R R A V S G S L G A D R D P . . . 161 CGCCCGCCCGACGGGACGGATC R P P D G T D A R P T G R I P P A R R D G Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:08 2003 ________________________________________________________________________________ Sequence 85: 16809115, from 1 to 337, both strands analyzed. ... started at: Mon Nov 10 17:49:08 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:08 2003 ________________________________________________________________________________ Sequence 86: 16809288, from 1 to 242, both strands analyzed. ... started at: Mon Nov 10 17:49:08 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 6952445-) 1 TTGAGGTCGC GGTGGTAGAC GCCGCGGCTG TGGCAGAAGT CGACGGCGCC GACGAGCTGG 61 TGGAAGTACC TTCTCGCGGC GTCCTCCTTG AGCCGGCCGC GGGCGACGCG GGCGAAGAGC 121 TCGCCGCCCC GGACGTACTC CATGGCGAAG TATATCTTGC TCTTGCTGGC CATCACCTCG 181 TGCAGCTGCA CGACGTTGGG GTGGCGGACG AGGCGCATGA CGGAGATCTC GCGCTTGATC 241 TGGTCGATCA TGCCGACGCG CATCACCTTC TCCTTGTCGA TGACCTTGAT GGCCACGCTC 301 TCGCCGGACG CGAGGTTCCG GCCGTGGTAC ACCTTGGCGA AGGTGCCCTG CCCGAGCGTG 361 CGCCCGAGCT CGTACCTGTT CATGAGGATG GTCGGCTTCT TCTCCATCCT TTCCTTGTGT 421 GGATTCGTTG ACGACGACGA CGACGACAGG GACAGCTACA ATGGTTCACG TGCGTCTGCT 481 CTGCGCCACT CCGTGCCTCT GACTTCCCCT CTCCCTGGCA GGCAGGGAGG AGAGGAAGGA 541 GAGGTGAACG AAGGGCGACA GAGCGGGCGC TATGGTGAGA GAGGAAACCT AGACACGCGG 601 A Predicted gene structure (within gDNA segment 1 to 242): Exon 1 1 237 ( 237 n); cDNA 296 535 ( 240 n); score: 0.975 MATCH 16809288+ 6952445- 0.975 237 0.979 G PGS_16809288+_6952445- (1 237) Alignment (genomic DNA sequence = upper lines): CGCTCTCGCC GGACGCGAGG TTCCGGCCGT GGTACACCTT GGCGAAGGTG CCCTGCCCGA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTCTCGCC GGACGCGAGG TTCCGGCCGT GGTACACCTT GGCGAAGGTG CCCTGCCCGA 355 GCGTGCGCCC GAGCTCGTAC CTGTTCATGA GGATGGTCGG CTTCTTCTCC ATCCTTTCCT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTGCGCCC GAGCTCGTAC CTGTTCATGA GGATGGTCGG CTTCTTCTCC ATCCTTTCCT 415 TGTGTGGATT CGTT---GAC GACGACGACG ACAGGGACAG CTACAATGGT TCACGTGCGT 177 |||||||||| |||| ||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGTGGATT CGTTGACGAC GACGACGACG ACAGGGACAG CTACAATGGT TCACGTGCGT 475 CTGCTCTGCG CCACTCCGTG CCTCTGACTT CCCCTCTCCC TGGCAGGCAG GGAGGAGAGG 237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTCTGCG CCACTCCGTG CCTCTGACTT CCCCTCTCCC TGGCAGGCAG GGAGGAGAGG 535 hqPGS_16809288+_6952445- (1 237) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 242: PGL 1 (+ strand): 1 237 AGS-1 (1 237) SCR (e 0.975) Exon 1 1 237 ( 237 n); score: 0.975 PGS (1 237) 6952445- 3-phase translation of AGS-1 (+strand): . . . . . . 1 CGCTCTCGCCGGACGCGAGGTTCCGGCCGTGGTACACCTTGGCGAAGGTGCCCTGCCCGA R S R R T R G S G R G T P W R R C P A R A L A G R E V P A V V H L G E G A L P E L S P D A R F R P W Y T L A K V P C P . . . . . . 61 GCGTGCGCCCGAGCTCGTACCTGTTCATGAGGATGGTCGGCTTCTTCTCCATCCTTTCCT A C A R A R T C S - G W S A S S P S F P R A P E L V P V H E D G R L L L H P F L S V R P S S Y L F M R M V G F F S I L S . . . . . . 121 TGTGTGGATTCGTTGACGACGACGACGACAGGGACAGCTACAATGGTTCACGTGCGTCTG C V D S L T T T T T G T A T M V H V R L V W I R - R R R R Q G Q L Q W F T C V C L C G F V D D D D D R D S Y N G S R A S . . . . . . 181 CTCTGCGCCACTCCGTGCCTCTGACTTCCCCTCTCCCTGGCAGGCAGGGAGGAGAGG L C A T P C L - L P L S L A G R E E R S A P L R A S D F P S P W Q A G R R A L R H S V P L T S P L P G R Q G G E Maximal non-overlapping open reading frames (>= 64 codons): >16809288+_PGL-1_AGS-1_PPS_1 (3 236) (frame '0'; 234 bp, 78 residues) 1 LSPDARFRPW YTLAKVPCPS VRPSSYLFMR MVGFFSILSL CGFVDDDDDR DSYNGSRASA 61 LRHSVPLTSP LPGRQGGE 3-phase translation of AGS-1 (-strand): . . . . . . 237 CCTCTCCTCCCTGCCTGCCAGGGAGAGGGGAAGTCAGAGGCACGGAGTGGCGCAGAGCAG P L L P A C Q G E G K S E A R S G A E Q L S S L P A R E R G S Q R H G V A Q S R S P P C L P G R G E V R G T E W R R A . . . . . . 177 ACGCACGTGAACCATTGTAGCTGTCCCTGTCGTCGTCGTCGTCAACGAATCCACACAAGG T H V N H C S C P C R R R R Q R I H T R R T - T I V A V P V V V V V N E S T Q G D A R E P L - L S L S S S S S T N P H K . . . . . . 117 AAAGGATGGAGAAGAAGCCGACCATCCTCATGAACAGGTACGAGCTCGGGCGCACGCTCG K G W R R S R P S S - T G T S S G A R S K D G E E A D H P H E Q V R A R A H A R E R M E K K P T I L M N R Y E L G R T L . . . . . . 57 GGCAGGGCACCTTCGCCAAGGTGTACCACGGCCGGAACCTCGCGTCCGGCGAGAGCG G R A P S P R C T T A G T S R P A R A A G H L R Q G V P R P E P R V R R E G Q G T F A K V Y H G R N L A S G E S Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:08 2003 ________________________________________________________________________________ Sequence 87: 16809364, from 1 to 486, both strands analyzed. ... started at: Mon Nov 10 17:49:08 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 4966908-) 1 CAGTACGCGG TGGAGCTGGT GGCCGGGCGG GAGAGCGCCA TCGCGCAGGT CATCCGCACC 61 GTGCCCAACC GCGCCTACAA CCTGTCGTTC GCCGTCGGCG ACGCCCGGAA CGGCTGCCAC 121 GGCTCTATGC TGGTGGAGGC GTTCGCGGGC AACGTCACGC AGAAGGTGCC GTTCGATTCC 181 ACGGGGAAAG GCGGGTTTAA GACGGCGGCG TTCAGGTTCG TGGCCAGCGG CGTCCGCACC 241 CGCCTCACCT TCTACAGCTC CTACTACCAC ACCAAGGTCA CCGACGGCGT CTCGCTCTGC 301 GGCCCCGTGC TGGACCAGGT CAAGGTTGTG CCTGTCAAGG CGTAGTGAAA TGTAGTGAAA 361 TGAATCGTGA GAGCGCCGAG TGACGGTCGA GTGACGGTCT GCTCTGCTCT GCTCTGCTCG 421 TCGTCTGTAG CTGTGCTCGT CGTGATTTGG CGTGGTGGGT TGTGAAAGTG TGGACGAATT 481 ATGGACCCTT CGGAATCTGA TCGTGGTGTG CTGTGCGGTG CGATGTGCTG TAGCGAAATT 541 TGGTTACTAA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 438 to 1): Exon 1 133 1 ( 133 n); cDNA 1 133 ( 133 n); score: 1.000 PPA cDNA 549 565 MATCH 16809364- 4966908- 1.000 133 0.304 G PGS_16809364-_4966908- (133 1) Alignment (genomic DNA sequence = upper lines): CAGTACGCGG TGGAGCTGGT GGCCGGGCGG GAGAGCGCCA TCGCGCAGGT CATCCGCACC 74 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTACGCGG TGGAGCTGGT GGCCGGGCGG GAGAGCGCCA TCGCGCAGGT CATCCGCACC 60 GTGCCCAACC GCGCCTACAA CCTGTCGTTC GCCGTCGGCG ACGCCCGGAA CGGCTGCCAC 14 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCCCAACC GCGCCTACAA CCTGTCGTTC GCCGTCGGCG ACGCCCGGAA CGGCTGCCAC 120 GGCTCTATGC TGG 1 |||||||||| ||| GGCTCTATGC TGG 133 hqPGS_16809364-_4966908- (133 1) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 486: PGL 1 (- strand): 133 1 AGS-1 (133 1) SCR (e 1.000) Exon 1 133 1 ( 133 n); score: 1.000 PGS (133 1) 4966908- 3-phase translation of AGS-1 (-strand): . . . . . . 133 CAGTACGCGGTGGAGCTGGTGGCCGGGCGGGAGAGCGCCATCGCGCAGGTCATCCGCACC Q Y A V E L V A G R E S A I A Q V I R T S T R W S W W P G G R A P S R R S S A P V R G G A G G R A G E R H R A G H P H . . . . . . 73 GTGCCCAACCGCGCCTACAACCTGTCGTTCGCCGTCGGCGACGCCCGGAACGGCTGCCAC V P N R A Y N L S F A V G D A R N G C H C P T A P T T C R S P S A T P G T A A T R A Q P R L Q P V V R R R R R P E R L P . . 13 GGCTCTATGCTGG G S M L A L C W R L Y A Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 1 CCAGCATAGAGCCGTGGCAGCCGTTCCGGGCGTCGCCGACGGCGAACGACAGGTTGTAGG P A - S R G S R S G R R R R R T T G C R Q H R A V A A V P G V A D G E R Q V V G S I E P W Q P F R A S P T A N D R L - . . . . . . 61 CGCGGTTGGGCACGGTGCGGATGACCTGCGCGATGGCGCTCTCCCGCCCGGCCACCAGCT R G W A R C G - P A R W R S P A R P P A A V G H G A D D L R D G A L P P G H Q L A R L G T V R M T C A M A L S R P A T S . . 121 CCACCGCGTACTG P P R T H R V L S T A Y Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:10 2003 ________________________________________________________________________________ Sequence 88: 16810470, from 1 to 187, both strands analyzed. ... started at: Mon Nov 10 17:49:10 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 6194991+) 1 GCGGCCGCGT CGACCGAGTG GTGATTGCAG GGCAGTGTCG GGCGGATCGA TGAACCCGGC 61 GAGGACGCTG GGGCCGGCGC TGGCGAGCAA CCTCTACACC GGCCTCTGGA TCTACTTCCT 121 GGGCCCCGTC CTCGGCACGC TCTCCGGGGC CTGGACCTAC ACCTACATCC GCTTCGAGGA 181 GGCGCCCAGC CACAAGGACA TGTCGCAGAA GCTCTCCTCC TTCAAGCTCC GCCGCCTGCA 241 GAGCCAGTCC GTCGCGGTCG ACGACGACGA GCTCGACCAG ATCCAAGTGT GATTCATGCT 301 CGATCGATCA GAGAGTGCGC ACTTGTTTAC TCCTCAGTCC TCTCACTCTA TGTATCGGCA 361 ACACTCCCTA GGATATACTA GTGGTCCGTA GTCATGGTCT ATGTCTATGT GTCGCTCTTC 421 TCTCGATCCA TGCACGTCCG TGGCGCGGTG TGGATGGGCT CGCTCTGTCA AATGTGCCAA 481 TGAGCTGGAG CTTAATTTTG GGACGAACAC TGTGCCGTGT G Predicted gene structure (within gDNA segment 1 to 187): Exon 1 1 187 ( 187 n); cDNA 225 409 ( 185 n); score: 0.957 MATCH 16810470+ 6194991+ 0.957 187 1.000 G PGS_16810470+_6194991+ (1 187) Alignment (genomic DNA sequence = upper lines): AGCTCCGCCG CCTGCAGAGC CATGTCCGTC GCGGTCGACG ACGACGAGCT CGACCACATC 60 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||| ||| AGCTCCGCCG CCTGCAGAGC CA-GTCCGTC GCGGTCGACG ACGACGAGCT CGACCAGATC 283 CAAGTGTGAT TCATGCTCGA TCGATCAGAG AGTGCGCACT TGTTTACTCC TCAGTCCTCT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTGTGAT TCATGCTCGA TCGATCAGAG AGTGCGCACT TGTTTACTCC TCAGTCCTCT 343 CACTCTATGT ATCGCCAACA CT-CCTAGGA TATACTAGTG GTCCGTAAGT CATGGTCGAT 179 |||||||||| |||| ||||| || ||||||| |||||||||| |||||| ||| ||||||| || CACTCTATGT ATCGGCAACA CTCCCTAGGA TATACTAGTG GTCCGT-AGT CATGGTCTAT 402 GTCCTATG 187 || ||||| GT-CTATG 409 hqPGS_16810470+_6194991+ (1 187) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 187: PGL 1 (+ strand): 1 187 AGS-1 (1 187) SCR (e 0.957) Exon 1 1 187 ( 187 n); score: 0.957 PGS (1 187) 6194991+ 3-phase translation of AGS-1 (+strand): . . . . . . 1 AGCTCCGCCGCCTGCAGAGCCATGTCCGTCGCGGTCGACGACGACGAGCTCGACCACATC S S A A C R A M S V A V D D D E L D H I A P P P A E P C P S R S T T T S S T T S L R R L Q S H V R R G R R R R A R P H . . . . . . 61 CAAGTGTGATTCATGCTCGATCGATCAGAGAGTGCGCACTTGTTTACTCCTCAGTCCTCT Q V - F M L D R S E S A H L F T P Q S S K C D S C S I D Q R V R T C L L L S P L P S V I H A R S I R E C A L V Y S S V L . . . . . . 121 CACTCTATGTATCGCCAACACTCCTAGGATATACTAGTGGTCCGTAAGTCATGGTCGATG H S M Y R Q H S - D I L V V R K S W S M T L C I A N T P R I Y - W S V S H G R C S L Y V S P T L L G Y T S G P - V M V D . 181 TCCTATG S Y P M V L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 187 CATAGGACATCGACCATGACTTACGGACCACTAGTATATCCTAGGAGTGTTGGCGATACA H R T S T M T Y G P L V Y P R S V G D T I G H R P - L T D H - Y I L G V L A I H - D I D H D L R T T S I S - E C W R Y . . . . . . 127 TAGAGTGAGAGGACTGAGGAGTAAACAAGTGCGCACTCTCTGATCGATCGAGCATGAATC - S E R T E E - T S A H S L I D R A - I R V R G L R S K Q V R T L - S I E H E S I E - E D - G V N K C A L S D R S S M N . . . . . . 67 ACACTTGGATGTGGTCGAGCTCGTCGTCGTCGACCGCGACGGACATGGCTCTGCAGGCGG T L G C G R A R R R R P R R T W L C R R H L D V V E L V V V D R D G H G S A G G H T W M W S S S S S S T A T D M A L Q A . 7 CGGAGCT R S G A A E Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:10 2003 ________________________________________________________________________________ Sequence 89: 16810927, from 1 to 374, both strands analyzed. ... started at: Mon Nov 10 17:49:10 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 5124352-) 1 CGGCACGAGC CATCCTCCAT TGCTTCCTCC CCCAAGATCT CCCCCTACGT AGCAAGGATC 61 GAGAAAAGGA GGGGCACGTT GAATTGAAGA GGAAGAGAGG ATCAAGGAGA TGTTCTTCCC 121 CATCTCCTCT TGAAGATTTC TTGGGGAAAC CCTAGGTGGC TACACTCCAG ATCATGTCTA 181 GTACATTTCT TCTTCTTCGA TGAAGGTGCT TGTTGCTCAT CAAGGGGAGT GGGAAGTAGC 241 AGCACATCCA CCTTCATTCT CATAATAATG CTGCCCAGAC GCAGCCATGA TTTAATTAGA 301 AACT Predicted gene structure (within gDNA segment 1 to 374): Exon 1 3 135 ( 133 n); cDNA 174 304 ( 131 n); score: 0.820 MATCH 16810927+ 5124352- 0.820 133 0.438 C PGS_16810927+_5124352- (3 135) Alignment (genomic DNA sequence = upper lines): ATGTTTCATC TCACTCTTGC ATTACTCAAT GAAGGTGCTT GTTGCTCATC AAGGAAAGTG 62 |||| | | || | | | || || || |||||||||| |||||||||| |||| |||| ATGTCT-AGT ACATTTCTTC -TTCTTCGAT GAAGGTGCTT GTTGCTCATC AAGGGGAGTG 231 GGAAGTAGCA GCACATCCAC CTTCACTCTC ATAATAACGT TGCTTAGGCG CAGTCATGAT 122 |||||||||| |||||||||| ||||| |||| ||||||| | ||| || || ||| |||||| GGAAGTAGCA GCACATCCAC CTTCATTCTC ATAATAATGC TGCCCAGACG CAGCCATGAT 291 TTAAATAGAA GCT 135 |||| ||||| || TTAATTAGAA ACT 304 hqPGS_16810927+_5124352- (3 135) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 374: PGL 1 (+ strand): 3 135 AGS-1 (3 135) SCR (e 0.820) Exon 1 3 135 ( 133 n); score: 0.820 PGS (3 135) 5124352- 3-phase translation of AGS-1 (+strand): . . . . . . 3 ATGTTTCATCTCACTCTTGCATTACTCAATGAAGGTGCTTGTTGCTCATCAAGGAAAGTG M F H L T L A L L N E G A C C S S R K V C F I S L L H Y S M K V L V A H Q G K W V S S H S C I T Q - R C L L L I K E S . . . . . . 63 GGAAGTAGCAGCACATCCACCTTCACTCTCATAATAACGTTGCTTAGGCGCAGTCATGAT G S S S T S T F T L I I T L L R R S H D E V A A H P P S L S - - R C L G A V M I G K - Q H I H L H S H N N V A - A Q S - . . 123 TTAAATAGAAGCT L N R S - I E A F K - K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 135 AGCTTCTATTTAAATCATGACTGCGCCTAAGCAACGTTATTATGAGAGTGAAGGTGGATG S F Y L N H D C A - A T L L - E - R W M A S I - I M T A P K Q R Y Y E S E G G C L L F K S - L R L S N V I M R V K V D . . . . . . 75 TGCTGCTACTTCCCACTTTCCTTGATGAGCAACAAGCACCTTCATTGAGTAATGCAAGAG C C Y F P L S L M S N K H L H - V M Q E A A T S H F P - - A T S T F I E - C K S V L L L P T F L D E Q Q A P S L S N A R . . 15 TGAGATGAAACAT - D E T E M K H V R - N Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:10 2003 ________________________________________________________________________________ Sequence 90: 16811034, from 1 to 499, both strands analyzed. ... started at: Mon Nov 10 17:49:10 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:10 2003 ________________________________________________________________________________ Sequence 91: 16812313, from 1 to 467, both strands analyzed. ... started at: Mon Nov 10 17:49:10 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 12973928-) 1 AGCGACGAGA ACCCCAACGC CTGCTCCGTC ATGTGAACTC GCTCGCTTCG CCGGTTTGCC 61 GCCGCCGCCG CGCCTTGGCA CCCCCTTCCT CCGTGTGAGA CCAAGAACCA TGGGCTTGTC 121 TGGATTAGCG GTGTCTTTAG TTAAAATTAT CAGTGAGTAG TAGCTAGCTT AAGCAGTGCT 181 CCGATCCGAG ATCAGTTCTT CCAGCAGACC TGTGTAAATG AGAGTCTCGC CGCCCCGCCC 241 CGCCCCGCCC CGGTGTAACG CATCGTCATG TGTAAAATCT ATCCGGACCC GATAAGTTTT 301 GCCCTTCTGT CAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 1 to 467): Exon 1 245 467 ( 223 n); cDNA 1 222 ( 222 n); score: 0.996 PPA cDNA 312 324 MATCH 16812313+ 12973928- 0.996 223 0.688 C PGS_16812313+_12973928- (245 467) Alignment (genomic DNA sequence = upper lines): AGCGACGAGA ACCCCAACGC CTGCTCCGTC ATGTGAACTC GCTCGCTTCG CCGGTTTGCC 304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCGACGAGA ACCCCAACGC CTGCTCCGTC ATGTGAACTC GCTCGCTTCG CCGGTTTGCC 60 GCCGCCGCCG CGCCTTGGCA CCCCCTTCCT CCGTGTGAGA CCAAGAACCA TGGGCTTGTC 364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GCCGCCGCCG CGCCTTGGCA CCCCCTTCCT CCGTGTGAGA CCAAGAACCA TGGGCTTGT- 119 CTGGATTAGC GGTGTCTTTA GTTAAAATTA TCAGTGAGTA GTAGCTAGCT TAAGCAGTGC 424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGATTAGC GGTGTCTTTA GTTAAAATTA TCAGTGAGTA GTAGCTAGCT TAAGCAGTGC 179 TCCGATCCGA GATCAGTTCT TCCAGCAGAC CTGTGTAAAT GAG 467 |||||||||| |||||||||| |||||||||| |||||||||| ||| TCCGATCCGA GATCAGTTCT TCCAGCAGAC CTGTGTAAAT GAG 222 hqPGS_16812313+_12973928- (245 467) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 467: PGL 1 (+ strand): 245 467 AGS-1 (245 467) SCR (e 0.996) Exon 1 245 467 ( 223 n); score: 0.996 PGS (245 467) 12973928- 3-phase translation of AGS-1 (+strand): . . . . . . 245 AGCGACGAGAACCCCAACGCCTGCTCCGTCATGTGAACTCGCTCGCTTCGCCGGTTTGCC S D E N P N A C S V M - T R S L R R F A A T R T P T P A P S C E L A R F A G L P R R E P Q R L L R H V N S L A S P V C . . . . . . 305 GCCGCCGCCGCGCCTTGGCACCCCCTTCCTCCGTGTGAGACCAAGAACCATGGGCTTGTC A A A A P W H P L P P C E T K N H G L V P P P R L G T P F L R V R P R T M G L S R R R R A L A P P S S V - D Q E P W A C . . . . . . 365 CTGGATTAGCGGTGTCTTTAGTTAAAATTATCAGTGAGTAGTAGCTAGCTTAAGCAGTGC L D - R C L - L K L S V S S S - L K Q C W I S G V F S - N Y Q - V V A S L S S A P G L A V S L V K I I S E - - L A - A V . . . . . 425 TCCGATCCGAGATCAGTTCTTCCAGCAGACCTGTGTAAATGAG S D P R S V L P A D L C K - P I R D Q F F Q Q T C V N E L R S E I S S S S R P V - M Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 467 CTCATTTACACAGGTCTGCTGGAAGAACTGATCTCGGATCGGAGCACTGCTTAAGCTAGC L I Y T G L L E E L I S D R S T A - A S S F T Q V C W K N - S R I G A L L K L A H L H R S A G R T D L G S E H C L S - . . . . . . 407 TACTACTCACTGATAATTTTAACTAAAGACACCGCTAATCCAGGACAAGCCCATGGTTCT Y Y S L I I L T K D T A N P G Q A H G S T T H - - F - L K T P L I Q D K P M V L L L L T D N F N - R H R - S R T S P W F . . . . . . 347 TGGTCTCACACGGAGGAAGGGGGTGCCAAGGCGCGGCGGCGGCGGCAAACCGGCGAAGCG W S H T E E G G A K A R R R R Q T G E A G L T R R K G V P R R G G G G K P A K R L V S H G G R G C Q G A A A A A N R R S . . . . . 287 AGCGAGTTCACATGACGGAGCAGGCGTTGGGGTTCTCGTCGCT S E F T - R S R R W G S R R A S S H D G A G V G V L V A E R V H M T E Q A L G F S S Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:11 2003 ________________________________________________________________________________ Sequence 92: 16812315, from 1 to 355, both strands analyzed. ... started at: Mon Nov 10 17:49:11 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:11 2003 ________________________________________________________________________________ Sequence 93: 16812343, from 1 to 200, both strands analyzed. ... started at: Mon Nov 10 17:49:11 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 ******************************************************************************** EST sequence 2 +strand (File: 6695899+) 1 TCCGGAGTCC AGGCAGAACG CTAGTCGGGG GGCGCGGTAG AGGAGGGATG GATCGGTCGT 61 ATCTCCCCGT GGCGGCGGCG GCGGCCGCCG CCCTGGTCCT CGTGTGCTGC TCCGGCCTCT 121 GCCGCGGCGA GCGGCTCGTN GCGAGGGAGT GCGAGGACCT GTTGTTCACC GGCCTCGCCC 181 TCTGCTCCGA CTGCAACGCG CTCTCCGAGT TCGTCAAGGA CCAAGAGCTG GTGGAGGATT 241 GCCGCAAATG CTGCACCGAG GATTCAGATG ATTCTATTAG CAAGCTCACA TTTTCTGGCG 301 CAATTATTGT GGTGTGCATG AGGAAACTGG TATTTTATCC AGAAGTTGCT GGCTTCCTCG 361 AAGAAGATAA A Predicted gene structure (within gDNA segment 1 to 200): Exon 1 1 198 ( 198 n); cDNA 42 235 ( 194 n); score: 0.899 MATCH 16812343+ 6695899+ 0.899 198 0.990 G PGS_16812343+_6695899+ (1 198) Alignment (genomic DNA sequence = upper lines): GGAGGGATGG ATCGGTCGTA TCTCCCCGTG GCGGCGGCGG CGGCCGTCGC CCTGG-CCTC 59 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| ||||| |||| GGAGGGATGG ATCGGTCGTA TCTCCCCGTG GCGGCGGCGG CGGCCGCCGC CCTGGTCCTC 101 GATGTGTCAT GCTTCCGGCC TCTGCCGCGG CGAGCGGCTC GGGGCGAGGG AGTGCGAGGT 119 | |||| | | || ||||||| |||||||||| |||||||||| | ||||||| ||||||||| G-TGTG-C-T GC-TCCGGCC TCTGCCGCGG CGAGCGGCTC GTNGCGAGGG AGTGCGAGGA 157 CCTGGGGTTC ACCGGCCTCG CCCTCTGCTC CGACTGCAAC GCGCTCTCCG AGTTCGCCAA 179 |||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| CCTGTTGTTC ACCGGCCTCG CCCTCTGCTC CGACTGCAAC GCGCTCTCCG AGTTCGTCAA 217 GGACCAAGGT ACGCCCGGA 198 ||||||| | | ||| GGACCAA-GA GCTGGTGGA 235 hqPGS_16812343+_6695899+ (1 198) ******************************************************************************** EST sequence 1 +strand (File: 6095282+) 1 TGCTTGCGGC AGCTCCGGAG TCCAGGCAGC ACGCTAGTCG GGGGGCGCGG GAGAGGAGGG 61 ATGGATCGGT CGTATCTCCC CGTGGCGGCG GCGGCGGCCG TCGCCCTGGT CCTCGTGTGC 121 TGCTCCGGCC TCTGCCGC Predicted gene structure (within gDNA segment 1 to 200): Exon 1 1 87 ( 87 n); cDNA 55 138 ( 84 n); score: 0.931 MATCH 16812343+ 6095282+ 0.931 87 0.630 C PGS_16812343+_6095282+ (1 87) Alignment (genomic DNA sequence = upper lines): GGAGGGATGG ATCGGTCGTA TCTCCCCGTG GCGGCGGCGG CGGCCGTCGC CCTGG-CCTC 59 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| GGAGGGATGG ATCGGTCGTA TCTCCCCGTG GCGGCGGCGG CGGCCGTCGC CCTGGTCCTC 114 GATGTGTCAT GCTTCCGGCC TCTGCCGC 87 | |||| | | || ||||||| |||||||| G-TGTG-C-T GC-TCCGGCC TCTGCCGC 138 hqPGS_16812343+_6095282+ (1 87) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 200: PGL 1 (+ strand): 1 198 AGS-1 (1 198) SCR (e 0.899) Exon 1 1 198 ( 198 n); score: 0.899 PGS (1 198) 6695899+ PGS (1 87) 6095282+ 3-phase translation of AGS-1 (+strand): . . . . . . 1 GGAGGGATGGATCGGTCGTATCTCCCCGTGGCGGCGGCGGCGGCCGTCGCCCTGGCCTCG G G M D R S Y L P V A A A A A V A L A S E G W I G R I S P W R R R R P S P W P R R D G S V V S P R G G G G G R R P G L . . . . . . 61 ATGTGTCATGCTTCCGGCCTCTGCCGCGGCGAGCGGCTCGGGGCGAGGGAGTGCGAGGTC M C H A S G L C R G E R L G A R E C E V C V M L P A S A A A S G S G R G S A R S D V S C F R P L P R R A A R G E G V R G . . . . . . 121 CTGGGGTTCACCGGCCTCGCCCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGCCAAG L G F T G L A L C S D C N A L S E F A K W G S P A S P S A P T A T R S P S S P R P G V H R P R P L L R L Q R A L R V R Q . . 181 GACCAAGGTACGCCCGGA D Q G T P G T K V R P G P R Y A R Maximal non-overlapping open reading frames (>= 64 codons): >16812343+_PGL-1_AGS-1_PPS_1 (1 198) (frame '1'; 198 bp, 66 residues) 1 GGMDRSYLPV AAAAAVALAS MCHASGLCRG ERLGARECEV LGFTGLALCS DCNALSEFAK 61 DQGTPG >16812343+_PGL-1_AGS-1_PPS_3 (2 196) (frame '2'; 195 bp, 65 residues) 1 EGWIGRISPW RRRRPSPWPR CVMLPASAAA SGSGRGSARS WGSPASPSAP TATRSPSSPR 61 TKVRP >16812343+_PGL-1_AGS-1_PPS_2 (3 197) (frame '0'; 195 bp, 65 residues) 1 RDGSVVSPRG GGGGRRPGLD VSCFRPLPRR AARGEGVRGP GVHRPRPLLR LQRALRVRQG 61 PRYAR 3-phase translation of AGS-1 (-strand): . . . . . . 198 TCCGGGCGTACCTTGGTCCTTGGCGAACTCGGAGAGCGCGTTGCAGTCGGAGCAGAGGGC S G R T L V L G E L G E R V A V G A E G P G V P W S L A N S E S A L Q S E Q R A R A Y L G P W R T R R A R C S R S R G . . . . . . 138 GAGGCCGGTGAACCCCAGGACCTCGCACTCCCTCGCCCCGAGCCGCTCGCCGCGGCAGAG E A G E P Q D L A L P R P E P L A A A E R P V N P R T S H S L A P S R S P R Q R R G R - T P G P R T P S P R A A R R G R . . . . . . 78 GCCGGAAGCATGACACATCGAGGCCAGGGCGACGGCCGCCGCCGCCGCCACGGGGAGATA A G S M T H R G Q G D G R R R R H G E I P E A - H I E A R A T A A A A A T G R Y G R K H D T S R P G R R P P P P P R G D . . 18 CGACCGATCCATCCCTCC R P I H P S D R S I P T T D P S L Maximal non-overlapping open reading frames (>= 64 codons): >16812343-_PGL-1_AGS-1_PPS_1 (198 1) (frame '1'; 198 bp, 66 residues) 1 SGRTLVLGEL GERVAVGAEG EAGEPQDLAL PRPEPLAAAE AGSMTHRGQG DGRRRRHGEI 61 RPIHPS ... finished at: Mon Nov 10 17:49:11 2003 ________________________________________________________________________________ Sequence 94: 16812715, from 1 to 316, both strands analyzed. ... started at: Mon Nov 10 17:49:11 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 ******************************************************************************** EST sequence 1 +strand (File: 1590767+) 1 TCCGCATGCC ACTGACAATA CCATCAGGTA CAACGCCAAG NNCAGGCACT GNNCGCACCA 61 AGCTCGGCTT CTGANNNTCG GGATTGGCCG GCTGCTGCGT CGGAAGGCTA GGGTCTAAGA 121 GCTATCTTCC TTCTGTTTTA TCAATGTGTC AGTTTTTCTG TAAGCTAGCA AGTGTTGCTA 181 TGACGCTTTT ATTAAGATTC TGGTGAGCGG TGATGTTAAG AGAAAATTGG CACTACTGTG 241 GTGTACCCCA AGATTCCTTN CAGCATTGCT AATGCTAAGT AAAGAACCCT TTATCTTATT Predicted gene structure (within gDNA segment 316 to 1): Exon 1 280 7 ( 274 n); cDNA 28 300 ( 273 n); score: 0.952 MATCH 16812715- 1590767+ 0.952 274 0.913 C PGS_16812715-_1590767+ (280 7) Alignment (genomic DNA sequence = upper lines): GTACAACGCC AAGCGCAGGC ACTGGCGCCG CACCAAGCTC GGCTTCTGAG CGTCGGGATT 221 |||||||||| ||| ||||| ||| | || |||||||||| ||||||||| |||||||| GTACAACGCC AAGNNCAGGC ACT-G-NNCG CACCAAGCTC GGCTTCTGAN NNTCGGGATT 85 GGCCGGCTGC TGCGTCGGAG GGCTAGGGTC TAAGAGCTAT CTTCCTTCTG NTTTATCAAT 161 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GGCCGGCTGC TGCGTCGGAA GGCTAGGGTC TAAGAGCTAT CTTCCTTCTG TTTTATCAAT 145 GNGTCAGTTT TTCTGTAAGC TAGCAAGTGT TGCTATGACG CTTTTATTAA GATTCTGGTG 101 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTCAGTTT TTCTGTAAGC TAGCAAGTGT TGCTATGACG CTTTTATTAA GATTCTGGTG 205 AGCGGTGATG TTAAGAGAAA ATTGGCACTA CTGTGGTGTA CCCCAAGATT CCTTGCAGCA 41 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| AGCGGTGATG TTAAGAGAAA ATTGGCACTA CTGTGGTGTA CCCCAAGATT CCTTNCAGCA 265 TTGCT-ATGC TAAGTAAAGA ACCCTTTATC TTATT 7 ||||| |||| |||||||||| |||||||||| ||||| TTGCTAATGC TAAGTAAAGA ACCCTTTATC TTATT 300 hqPGS_16812715-_1590767+ (280 7) ******************************************************************************** EST sequence 2 +strand (File: 1713316+) 1 CCGCCGCCGA AACCATGCCG TCCCACAAGA CCTTCCGGAT CAAGAAGAAG CTGGCCAAGA 61 AGATGCGCCA GAACCGCCCC ATCCCCTACT GGATCCGCAT GCGCACCGAC AATACCATCA 121 GGTACAACGC CAAGCGCAGN NACTGGCGAC GCACGAAGCT CGGCTTCTGA GCGGTGGAAG 181 AGATGATGGC CAACGATGCT TGTGGAGGAT AGAGCTCTGC AAAAGCTAGG AAGCTCTTGT 241 TTAAGATTTT GTTGTGTTAA AGGGAGCTGA CTGAGAATAT TGTTCTCTCT GATGGTTAAA 301 GAACTGCCTT TTTATGTT Predicted gene structure (within gDNA segment 316 to 1): Exon 1 284 230 ( 55 n); cDNA 118 172 ( 55 n); score: 0.927 MATCH 16812715- 1713316+ 0.927 55 0.174 G PGS_16812715-_1713316+ (284 230) Alignment (genomic DNA sequence = upper lines): TCAGGTACAA CGCCAAGCGC AGGCACTGGC GCCGCACCAA GCTCGGCTTC TGAGC 230 |||||||||| |||||||||| || |||||| | ||||| || |||||||||| ||||| TCAGGTACAA CGCCAAGCGC AGNNACTGGC GACGCACGAA GCTCGGCTTC TGAGC 172 hqPGS_16812715-_1713316+ (284 230) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 316: PGL 1 (- strand): 284 7 AGS-1 (284 7) SCR (e 0.952) Exon 1 284 7 ( 278 n); score: 0.952 PGS (280 7) 1590767+ PGS (284 230) 1713316+ 3-phase translation of AGS-1 (-strand): . . . . . . 284 TCAGGTACAACGCCAAGCGCAGGCACTGGCGCCGCACCAAGCTCGGCTTCTGAGCGTCGG S G T T P S A G T G A A P S S A S E R R Q V Q R Q A Q A L A P H Q A R L L S V G R Y N A K R R H W R R T K L G F - A S . . . . . . 224 GATTGGCCGGCTGCTGCGTCGGAGGGCTAGGGTCTAAGAGCTATCTTCCTTCTGNTTTAT D W P A A A S E G - G L R A I F L L X Y I G R L L R R R A R V - E L S S F X F I G L A G C C V G G L G S K S Y L P S X L . . . . . . 164 CAATGNGTCAGTTTTTCTGTAAGCTAGCAAGTGTTGCTATGACGCTTTTATTAAGATTCT Q X V S F S V S - Q V L L - R F Y - D S N X S V F L - A S K C C Y D A F I K I L S M X Q F F C K L A S V A M T L L L R F . . . . . . 104 GGTGAGCGGTGATGTTAAGAGAAAATTGGCACTACTGTGGTGTACCCCAAGATTCCTTGC G E R - C - E K I G T T V V Y P K I P C V S G D V K R K L A L L W C T P R F L A W - A V M L R E N W H Y C G V P Q D S L . . . . 44 AGCATTGCTATGCTAAGTAAAGAACCCTTTATCTTATT S I A M L S K E P F I L A L L C - V K N P L S Y Q H C Y A K - R T L Y L I Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 7 AATAAGATAAAGGGTTCTTTACTTAGCATAGCAATGCTGCAAGGAATCTTGGGGTACACC N K I K G S L L S I A M L Q G I L G Y T I R - R V L Y L A - Q C C K E S W G T P - D K G F F T - H S N A A R N L G V H . . . . . . 67 ACAGTAGTGCCAATTTTCTCTTAACATCACCGCTCACCAGAATCTTAATAAAAGCGTCAT T V V P I F S - H H R S P E S - - K R H Q - C Q F S L N I T A H Q N L N K S V I H S S A N F L L T S P L T R I L I K A S . . . . . . 127 AGCAACACTTGCTAGCTTACAGAAAAACTGACNCATTGATAAANCAGAAGGAAGATAGCT S N T C - L T E K L X H - - X R R K I A A T L A S L Q K N - X I D K X E G R - L - Q H L L A Y R K T D X L I X Q K E D S . . . . . . 187 CTTAGACCCTAGCCCTCCGACGCAGCAGCCGGCCAATCCCGACGCTCAGAAGCCGAGCTT L R P - P S D A A A G Q S R R S E A E L L D P S P P T Q Q P A N P D A Q K P S L S - T L A L R R S S R P I P T L R S R A . . . . 247 GGTGCGGCGCCAGTGCCTGCGCTTGGCGTTGTACCTGA G A A P V P A L G V V P V R R Q C L R L A L Y L W C G A S A C A W R C T - Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:12 2003 ________________________________________________________________________________ Sequence 95: 16812730, from 1 to 127, both strands analyzed. ... started at: Mon Nov 10 17:49:12 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 488215+) 1 CCTCCCCCTC CGGTTCGGGT TCGGGTTCGT GAGGTTCTCC GGGGTTCGGG TTCGTGGGTG 61 AGCGGATCGA GATGGCNNCN TCGGATGTTG AGTACCGCTG CTTCGTCGGC GCCTCCTNNN 121 CCACNGACGA CCACTCCCTC CACAACNCCT TCAGCACCTA C Predicted gene structure (within gDNA segment 1 to 127): Exon 1 2 107 ( 106 n); cDNA 59 161 ( 103 n); score: 0.858 MATCH 16812730+ 488215+ 0.858 106 0.835 G PGS_16812730+_488215+ (2 107) Alignment (genomic DNA sequence = upper lines): TGAGCGGATC GAGATGGCGG CGTCGGATGT TGAGTACCGC TGCTTCGTCG GCGGTCTCGC 61 |||||||||| |||||||| | |||||||| |||||||||| |||||||||| || | | | | TGAGCGGATC GAGATGGCNN CNTCGGATGT TGAGTACCGC TGCTTCGTCG GC-G-C-CTC 115 CTGGGGCGGG GACGACCACT CCCTCCACAA CGCCTTCAGC ACCTAC 107 || | |||||||||| |||||||||| | |||||||| |||||| CTNNNCCACN GACGACCACT CCCTCCACAA CNCCTTCAGC ACCTAC 161 hqPGS_16812730+_488215+ (2 107) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 127: PGL 1 (+ strand): 2 107 AGS-1 (2 107) SCR (e 0.858) Exon 1 2 107 ( 106 n); score: 0.858 PGS (2 107) 488215+ 3-phase translation of AGS-1 (+strand): . . . . . . 2 TGAGCGGATCGAGATGGCGGCGTCGGATGTTGAGTACCGCTGCTTCGTCGGCGGTCTCGC - A D R D G G V G C - V P L L R R R S R E R I E M A A S D V E Y R C F V G G L A S G S R W R R R M L S T A A S S A V S . . . . . 62 CTGGGGCGGGGACGACCACTCCCTCCACAACGCCTTCAGCACCTAC L G R G R P L P P Q R L Q H L W G G D D H S L H N A F S T Y P G A G T T T P S T T P S A P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 107 GTAGGTGCTGAAGGCGTTGTGGAGGGAGTGGTCGTCCCCGCCCCAGGCGAGACCGCCGAC V G A E G V V E G V V V P A P G E T A D - V L K A L W R E W S S P P Q A R P P T R C - R R C G G S G R P R P R R D R R . . . . . 47 GAAGCAGCGGTACTCAACATCCGACGCCGCCATCTCGATCCGCTCA E A A V L N I R R R H L D P L K Q R Y S T S D A A I S I R S R S S G T Q H P T P P S R S A Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:12 2003 ________________________________________________________________________________ Sequence 96: 16813222, from 1 to 413, both strands analyzed. ... started at: Mon Nov 10 17:49:12 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: 5456123-) 1 TCGAGCCCAG CCAGGCAGGG CGACCGAGCT ACGCACAGAT GTTCACGGAC GTGGGCGTGT 61 ACTACGCCCC CGGGGCGGTG CTGAGGGGGG AGGAGTTCAA CGGCGCGGAG GCTGTGCACA 121 GGCTGGAGCA GTGGCTGATC GAGAACCACA GCTACCAGCC GCAGTACGCG GTGTCGGAGC 181 TGAACGAGAA GGACTTCTGG CGCATGTTCG ACGCGTCGCC CTACGAGCAC TGCCGCCAAA 241 AGTACGGGGC GGTGGGCACG TTCATGAGCG TGTACTACAA GTCCAAGAAG GGGCGCAAGA 301 CGGAGAAGGA GGTGCAGGAG GCGGAGGCGG CCATACTGGA GCCGGCCTAC GCGGACGAGG 361 AGGCCTAAAA GCTCGTGGTC GTTTTGCTTA GCCCATTTTA ATTAGAACTT GATGGATGTA 421 GTGTGTGTCT GTCTCAAGTC ATTTTAATTA GAACTCTTAA AGCTCGTGGT CGGTCGGTCA 481 GTCAGTCAGT CATTGTCGTT GATGTCCAGC GTTGTGTTTT TTTTATATTC TCTAATGGAA 541 TCTCTCAGA Predicted gene structure (within gDNA segment 413 to 8): Exon 1 408 308 ( 101 n); cDNA 453 549 ( 97 n); score: 0.931 MATCH 16813222- 5456123- 0.931 101 0.249 G PGS_16813222-_5456123- (408 308) Alignment (genomic DNA sequence = upper lines): ACTCTTAAAG CTCGTGGTCG ATCGGTCGGT CAGTCAGTCA GTCCTTGTCC CTGATGTCCA 349 |||||||||| ||||| | | ||||||||| |||||||||| ||| ||||| ||||||||| ACTCTTAAAG CTCGT-G--G -TCGGTCGGT CAGTCAGTCA GTCATTGTCG TTGATGTCCA 508 GCGTTGTGTT TTTTTTATAT TCTCTAATGG AATCTCTCAG A 308 |||||||||| |||||||||| |||||||||| |||||||||| | GCGTTGTGTT TTTTTTATAT TCTCTAATGG AATCTCTCAG A 549 hqPGS_16813222-_5456123- (408 308) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 413: PGL 1 (- strand): 408 308 AGS-1 (408 308) SCR (e 0.931) Exon 1 408 308 ( 101 n); score: 0.931 PGS (408 308) 5456123- 3-phase translation of AGS-1 (-strand): . . . . . . 408 ACTCTTAAAGCTCGTGGTCGATCGGTCGGTCAGTCAGTCAGTCCTTGTCCCTGATGTCCA T L K A R G R S V G Q S V S P C P - C P L L K L V V D R S V S Q S V L V P D V Q S - S S W S I G R S V S Q S L S L M S . . . . . 348 GCGTTGTGTTTTTTTTATATTCTCTAATGGAATCTCTCAGA A L C F F Y I L - W N L S R C V F F I F S N G I S Q S V V F F L Y S L M E S L R Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 308 TCTGAGAGATTCCATTAGAGAATATAAAAAAAACACAACGCTGGACATCAGGGACAAGGA S E R F H - R I - K K H N A G H Q G Q G L R D S I R E Y K K N T T L D I R D K D - E I P L E N I K K T Q R W T S G T R . . . . . 368 CTGACTGACTGACCGACCGATCGACCACGAGCTTTAAGAGT L T D - P T D R P R A L R - L T D R P I D H E L - E T D - L T D R S T T S F K S Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:12 2003 ________________________________________________________________________________ Sequence 97: 16814168, from 1 to 230, both strands analyzed. ... started at: Mon Nov 10 17:49:12 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:13 2003 ________________________________________________________________________________ Sequence 98: 16814732, from 1 to 252, both strands analyzed. ... started at: Mon Nov 10 17:49:13 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 1298579+) 1 CTTCCTACTG TNCCGATGGC CCGCACGAAG CAGACGGCGA GGAAGTCCAC TGGCGGCAAG 61 GCCAAGGAAG CAGCTGGCCA CCAAGGCGGC NCGCAAGTCT GCCCCGGCGA CCGCGGAGTG 121 AAGAAGCCCC ACCGTTTCCN CCCCGGCACC GTCNCGCTCC GGGAGATCCG CAAGTACCAA 181 AGAGCACGAG CTGCTGATC Predicted gene structure (within gDNA segment 1 to 252): Exon 1 94 252 ( 159 n); cDNA 13 168 ( 156 n); score: 0.881 MATCH 16814732+ 1298579+ 0.881 159 0.799 C PGS_16814732+_1298579+ (94 252) Alignment (genomic DNA sequence = upper lines): CCGATGGCCC GCACGAAGCA GACGGCTCGC AAGTCGACGG GCGGCAAGGC GCCCCGCAAG 153 |||||||||| |||||||||| |||||| | ||||| || | ||||||| | ||| | ||| CCGATGGCCC GCACGAAGCA GACGGCGAGG AAGTCCACTG GCGGCAA-G- GCCAAGGAAG 70 CAGCTGGCGA CCAAGGCGGC GCGCAAGTCT GCGCCGGCCA CCGGCGGCGT GAAGAAGCCC 213 |||||||| | |||||||||| ||||||||| || ||||| | || |||| || |||||||||| CAGCTGGCCA CCAAGGCGGC NCGCAAGTCT GCCCCGGCGA CC-GCGGAGT GAAGAAGCCC 129 CACCGCTTCC GCCCCGGCAC CGTCGCGCTC CGGGAGATC 252 ||||| |||| ||||||||| |||| ||||| ||||||||| CACCGTTTCC NCCCCGGCAC CGTCNCGCTC CGGGAGATC 168 hqPGS_16814732+_1298579+ (94 252) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 252: PGL 1 (+ strand): 94 252 AGS-1 (94 252) SCR (e 0.881) Exon 1 94 252 ( 159 n); score: 0.881 PGS (94 252) 1298579+ 3-phase translation of AGS-1 (+strand): . . . . . . 94 CCGATGGCCCGCACGAAGCAGACGGCTCGCAAGTCGACGGGCGGCAAGGCGCCCCGCAAG P M A R T K Q T A R K S T G G K A P R K R W P A R S R R L A S R R A A R R P A S D G P H E A D G S Q V D G R Q G A P Q . . . . . . 154 CAGCTGGCGACCAAGGCGGCGCGCAAGTCTGCGCCGGCCACCGGCGGCGTGAAGAAGCCC Q L A T K A A R K S A P A T G G V K K P S W R P R R R A S L R R P P A A - R S P A A G D Q G G A Q V C A G H R R R E E A . . . . 214 CACCGCTTCCGCCCCGGCACCGTCGCGCTCCGGGAGATC H R F R P G T V A L R E I T A S A P A P S R S G R P P L P P R H R R A P G D Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 252 GATCTCCCGGAGCGCGACGGTGCCGGGGCGGAAGCGGTGGGGCTTCTTCACGCCGCCGGT D L P E R D G A G A E A V G L L H A A G I S R S A T V P G R K R W G F F T P P V S P G A R R C R G G S G G A S S R R R . . . . . . 192 GGCCGGCGCAGACTTGCGCGCCGCCTTGGTCGCCAGCTGCTTGCGGGGCGCCTTGCCGCC G R R R L A R R L G R Q L L A G R L A A A G A D L R A A L V A S C L R G A L P P W P A Q T C A P P W S P A A C G A P C R . . . . 132 CGTCGACTTGCGAGCCGTCTGCTTCGTGCGGGCCATCGG R R L A S R L L R A G H R V D L R A V C F V R A I P S T C E P S A S C G P S Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:13 2003 ________________________________________________________________________________ Sequence 99: 16815651, from 1 to 428, both strands analyzed. ... started at: Mon Nov 10 17:49:13 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:13 2003 ________________________________________________________________________________ Sequence 100: 16815757, from 1 to 382, both strands analyzed. ... started at: Mon Nov 10 17:49:13 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 2615448+) 1 CGACCAGGCG TGCACGATGG AGGTGCAGGA CTGCGGGCAC CAGATGTGCG CGCCGTGCAC 61 GCTCGCGCTG TGCTGCCACA GCAAGCCCGA CCCGGTGACG CTAGCGCTGC CGTCGCCAGC 121 CTGCCCGTTC TGCCGCGGCA GCATCTCGCG GCTGCTGCTG GTGGCCCGGG CAAGCAGCGA 181 CGACGCAGAC ACCGAGAAGT CGGCGGCAGC GGCTGCGGCA GCGGCTGCCT CCTCCCCGCA 241 GCTCGTCCGG CGGCGGTCCC GGCGGTCGCA CAACCTCAGC GACGGCGGCA GCAGCAGCTT 301 CAAGGGGCTG TCGTCCGCCG TGGCCGGTTC CTTCTCCAA Predicted gene structure (within gDNA segment 1 to 382): Exon 1 6 293 ( 288 n); cDNA 52 339 ( 288 n); score: 0.997 MATCH 16815757+ 2615448+ 0.997 288 0.850 C PGS_16815757+_2615448+ (6 293) Alignment (genomic DNA sequence = upper lines): GCCGTGCACG CTCGCGCTGT GCTGCCACAG CAAGCCCGAC CCGGTGACGC TAGCGCTGCC 65 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGTGCACG CTCGCGCTGT GCTGCCACAG CAAGCCCGAC CCGGTGACGC TAGCGCTGCC 111 GTCGCCAGCC TGCCCGTTCT GCCGCGGCAG CATCTCGCGG CTGCTGCTGG TGGCCCGGGC 125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGCCAGCC TGCCCGTTCT GCCGCGGCAG CATCTCGCGG CTGCTGCTGG TGGCCCGGGC 171 AAGCAGCGAC GACGCAGACA CCGAGAAGTC GGCGGCAGCG GCTGCGGCAG CGGCTGCCTC 185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAGCGAC GACGCAGACA CCGAGAAGTC GGCGGCAGCG GCTGCGGCAG CGGCTGCCTC 231 CTCCCCGCAG CTCGACCGGC GGCGGTCCCG GCGGTCGCAC AACCTCAGCG ACGGCGGCAG 245 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCCCGCAG CTCGTCCGGC GGCGGTCCCG GCGGTCGCAC AACCTCAGCG ACGGCGGCAG 291 CAGCAGCTTC AAGGGGCTGT CGTCCGCCGT GGCCGGTTCC TTCTCCAA 293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CAGCAGCTTC AAGGGGCTGT CGTCCGCCGT GGCCGGTTCC TTCTCCAA 339 hqPGS_16815757+_2615448+ (6 293) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 382: PGL 1 (+ strand): 6 293 AGS-1 (6 293) SCR (e 0.997) Exon 1 6 293 ( 288 n); score: 0.997 PGS (6 293) 2615448+ 3-phase translation of AGS-1 (+strand): . . . . . . 6 GCCGTGCACGCTCGCGCTGTGCTGCCACAGCAAGCCCGACCCGGTGACGCTAGCGCTGCC A V H A R A V L P Q Q A R P G D A S A A P C T L A L C C H S K P D P V T L A L P R A R S R C A A T A S P T R - R - R C . . . . . . 66 GTCGCCAGCCTGCCCGTTCTGCCGCGGCAGCATCTCGCGGCTGCTGCTGGTGGCCCGGGC V A S L P V L P R Q H L A A A A G G P G S P A C P F C R G S I S R L L L V A R A R R Q P A R S A A A A S R G C C W W P G . . . . . . 126 AAGCAGCGACGACGCAGACACCGAGAAGTCGGCGGCAGCGGCTGCGGCAGCGGCTGCCTC K Q R R R R H R E V G G S G C G S G C L S S D D A D T E K S A A A A A A A A A S Q A A T T Q T P R S R R Q R L R Q R L P . . . . . . 186 CTCCCCGCAGCTCGACCGGCGGCGGTCCCGGCGGTCGCACAACCTCAGCGACGGCGGCAG L P A A R P A A V P A V A Q P Q R R R Q S P Q L D R R R S R R S H N L S D G G S P P R S S T G G G P G G R T T S A T A A . . . . . 246 CAGCAGCTTCAAGGGGCTGTCGTCCGCCGTGGCCGGTTCCTTCTCCAA Q Q L Q G A V V R R G R F L L Q S S F K G L S S A V A G S F S A A A S R G C R P P W P V P S P Maximal non-overlapping open reading frames (>= 64 codons): >16815757+_PGL-1_AGS-1_PPS_1 (6 293) (frame '1'; 288 bp, 96 residues) 1 AVHARAVLPQ QARPGDASAA VASLPVLPRQ HLAAAAGGPG KQRRRRHREV GGSGCGSGCL 61 LPAARPAAVP AVAQPQRRRQ QQLQGAVVRR GRFLLQ >16815757+_PGL-1_AGS-1_PPS_2 (7 291) (frame '2'; 285 bp, 95 residues) 1 PCTLALCCHS KPDPVTLALP SPACPFCRGS ISRLLLVARA SSDDADTEKS AAAAAAAAAS 61 SPQLDRRRSR RSHNLSDGGS SSFKGLSSAV AGSFS 3-phase translation of AGS-1 (-strand): . . . . . . 293 TTGGAGAAGGAACCGGCCACGGCGGACGACAGCCCCTTGAAGCTGCTGCTGCCGCCGTCG L E K E P A T A D D S P L K L L L P P S W R R N R P R R T T A P - S C C C R R R G E G T G H G G R Q P L E A A A A A V . . . . . . 233 CTGAGGTTGTGCGACCGCCGGGACCGCCGCCGGTCGAGCTGCGGGGAGGAGGCAGCCGCT L R L C D R R D R R R S S C G E E A A A - G C A T A G T A A G R A A G R R Q P L A E V V R P P G P P P V E L R G G G S R . . . . . . 173 GCCGCAGCCGCTGCCGCCGACTTCTCGGTGTCTGCGTCGTCGCTGCTTGCCCGGGCCACC A A A A A A D F S V S A S S L L A R A T P Q P L P P T S R C L R R R C L P G P P C R S R C R R L L G V C V V A A C P G H . . . . . . 113 AGCAGCAGCCGCGAGATGCTGCCGCGGCAGAACGGGCAGGCTGGCGACGGCAGCGCTAGC S S S R E M L P R Q N G Q A G D G S A S A A A A R C C R G R T G R L A T A A L A Q Q Q P R D A A A A E R A G W R R Q R - . . . . . 53 GTCACCGGGTCGGGCTTGCTGTGGCAGCACAGCGCGAGCGTGCACGGC V T G S G L L W Q H S A S V H G S P G R A C C G S T A R A C T R H R V G L A V A A Q R E R A R Maximal non-overlapping open reading frames (>= 64 codons): >16815757-_PGL-1_AGS-1_PPS_1 (293 6) (frame '1'; 288 bp, 96 residues) 1 LEKEPATADD SPLKLLLPPS LRLCDRRDRR RSSCGEEAAA AAAAAADFSV SASSLLARAT 61 SSSREMLPRQ NGQAGDGSAS VTGSGLLWQH SASVHG ... finished at: Mon Nov 10 17:49:13 2003 ________________________________________________________________________________ Sequence 101: 16816598, from 1 to 488, both strands analyzed. ... started at: Mon Nov 10 17:49:13 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:13 2003 ________________________________________________________________________________ Sequence 102: 16818327, from 1 to 126, both strands analyzed. ... started at: Mon Nov 10 17:49:13 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:14 2003 ________________________________________________________________________________ Sequence 103: 16818785, from 1 to 236, both strands analyzed. ... started at: Mon Nov 10 17:49:14 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:14 2003 ________________________________________________________________________________ Sequence 104: 16818818, from 1 to 142, both strands analyzed. ... started at: Mon Nov 10 17:49:14 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 5124352-) 1 CGGCACGAGC CATCCTCCAT TGCTTCCTCC CCCAAGATCT CCCCCTACGT AGCAAGGATC 61 GAGAAAAGGA GGGGCACGTT GAATTGAAGA GGAAGAGAGG ATCAAGGAGA TGTTCTTCCC 121 CATCTCCTCT TGAAGATTTC TTGGGGAAAC CCTAGGTGGC TACACTCCAG ATCATGTCTA 181 GTACATTTCT TCTTCTTCGA TGAAGGTGCT TGTTGCTCAT CAAGGGGAGT GGGAAGTAGC 241 AGCACATCCA CCTTCATTCT CATAATAATG CTGCCCAGAC GCAGCCATGA TTTAATTAGA 301 AACT Predicted gene structure (within gDNA segment 1 to 142): Exon 1 31 142 ( 112 n); cDNA 58 167 ( 110 n); score: 0.804 MATCH 16818818+ 5124352- 0.804 112 0.789 G PGS_16818818+_5124352- (31 142) Alignment (genomic DNA sequence = upper lines): ATCGAGAAGA AGAGGAGCAA GATGGATTGA AGAGGAAGAG AGGATCAAGG AGATGTTCTA 90 |||||||| | |||| ||| | || ||||| |||||||||| |||||||||| ||||||||| ATCGAGAAAA GGAGGGGCAC GTTGAATTGA AGAGGAAGAG AGGATCAAGG AGATGTTCTT 117 CCCCCCATC- TATTGCAGAT TTTCTTGGGG AAACCCTAGG TAAGGATGGG ATC 142 |||| || | ||| ||| |||||||||| |||||||||| | || | || CCCCATCTCC TCTTGAAGA- TTTCTTGGGG AAACCCTAGG T--GGCTACA CTC 167 hqPGS_16818818+_5124352- (31 142) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 142: PGL 1 (+ strand): 31 142 AGS-1 (31 142) SCR (e 0.804) Exon 1 31 142 ( 112 n); score: 0.804 PGS (31 142) 5124352- 3-phase translation of AGS-1 (+strand): . . . . . . 31 ATCGAGAAGAAGAGGAGCAAGATGGATTGAAGAGGAAGAGAGGATCAAGGAGATGTTCTA I E K K R S K M D - R G R E D Q G D V L S R R R G A R W I E E E E R I K E M F Y R E E E E Q D G L K R K R G S R R C S . . . . . . 91 CCCCCCATCTATTGCAGATTTTCTTGGGGAAACCCTAGGTAAGGATGGGATC P P I Y C R F S W G N P R - G W D P P S I A D F L G E T L G K D G I T P H L L Q I F L G K P - V R M G Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 142 GATCCCATCCTTACCTAGGGTTTCCCCAAGAAAATCTGCAATAGATGGGGGGTAGAACAT D P I L T - G F P K K I C N R W G V E H I P S L P R V S P R K S A I D G G - N I S H P Y L G F P Q E N L Q - M G G R T . . . . . . 82 CTCCTTGATCCTCTCTTCCTCTTCAATCCATCTTGCTCCTCTTCTTCTCGAT L L D P L F L F N P S C S S S S R S L I L S S S S I H L A P L L L D S P - S S L P L Q S I L L L F F S Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:14 2003 ________________________________________________________________________________ Sequence 105: 16818937, from 1 to 298, both strands analyzed. ... started at: Mon Nov 10 17:49:14 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:14 2003 ________________________________________________________________________________ Sequence 106: 16819020, from 1 to 279, both strands analyzed. ... started at: Mon Nov 10 17:49:14 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:15 2003 ________________________________________________________________________________ Sequence 107: 16819927, from 1 to 84, both strands analyzed. ... started at: Mon Nov 10 17:49:15 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:15 2003 ________________________________________________________________________________ Sequence 108: 16819950, from 1 to 87, both strands analyzed. ... started at: Mon Nov 10 17:49:15 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:15 2003 ________________________________________________________________________________ Sequence 109: 16821288, from 1 to 381, both strands analyzed. ... started at: Mon Nov 10 17:49:15 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:15 2003 ________________________________________________________________________________ Sequence 110: 16821463, from 1 to 356, both strands analyzed. ... started at: Mon Nov 10 17:49:15 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:15 2003 ________________________________________________________________________________ Sequence 111: 16821712, from 1 to 165, both strands analyzed. ... started at: Mon Nov 10 17:49:15 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:15 2003 ________________________________________________________________________________ Sequence 112: 16822442, from 1 to 201, both strands analyzed. ... started at: Mon Nov 10 17:49:15 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:15 2003 ________________________________________________________________________________ Sequence 113: 16823883, from 1 to 603, both strands analyzed. ... started at: Mon Nov 10 17:49:15 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:16 2003 ________________________________________________________________________________ Sequence 114: 16823963, from 1 to 561, both strands analyzed. ... started at: Mon Nov 10 17:49:16 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:16 2003 ________________________________________________________________________________ Sequence 115: 16824512, from 1 to 452, both strands analyzed. ... started at: Mon Nov 10 17:49:16 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:16 2003 ________________________________________________________________________________ Sequence 116: 16826946, from 1 to 325, both strands analyzed. ... started at: Mon Nov 10 17:49:16 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:16 2003 ________________________________________________________________________________ Sequence 117: 16828254, from 1 to 484, both strands analyzed. ... started at: Mon Nov 10 17:49:16 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 6020386-) 1 AATCCCCATC AGCCTACTTG GATCTCTGCC TCATCTTTCG GCGCTTCCTC TTCAGCCTCC 61 TCATGCGCTT CTTCTTCCAC TTGGCCCTCA TAGTCGCCTC CTTGCGGGCT CTCCTTGGCG 121 CGTCTCCTGC TGCTGAGTCG GCGGCGGGTT CACGATATGG GTTTTTTTTT ATGGACAAAT 181 AATTTACCTA TTCCTTGTGT TCGCCTCTAC TGACAGCAAT CAATCAATCA TTTACAGTGT 241 GTGTTTGTGT AGATTAACCT TGGACACGAC AATACCTTGT TTTTGTTCCT ATCCTTCCTC 301 AACAACAACA ACAAAAAACA AAACAATGAA AGAAATGAAT CTTGCCGCCA CAAGAGTGGA 361 GAGGGAGAGA CTAGAGAGAG AGGGGAAAGG AGAAGAGGAA ACAAGTATAT GTATAGAACA 421 ATAACAGAAA AAAAAGAGAG AGAGACACGG CGTGAAGTGA GGTGAGCAGC TGATCTGAAG 481 TGAATGAAAC CTGCAGCAGA GCAGAG Predicted gene structure (within gDNA segment 484 to 1): Exon 1 204 8 ( 197 n); cDNA 170 366 ( 197 n); score: 0.970 MATCH 16828254- 6020386- 0.970 197 0.407 G PGS_16828254-_6020386- (204 8) Alignment (genomic DNA sequence = upper lines): TATGGACAAA TAATTTACCT ATTCCTTGTG TTCGCCTCTA CTGACAGCAA TCAATCAATC 145 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGACAAA TAATTTACCT ATTCCTTGTG TTCGCCTCTA CTGACAGCAA TCAATCAATC 229 ATTTACAGTG TGTGTTTGTG TAGATTAACC TTGGACACGA CAATACCTTG TTTTTGTTCC 85 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTACAGTG TGTGTTTGTG TAGATTAACC TTGGACACGA CAATACCTTG TTTTTGTTCC 289 TATCCTTCCT CAACAACAAC AACAAAAGAC AAAACAATGA AAGAAATGAA TCTTGCCCGC 25 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ||||||| | TATCCTTCCT CAACAACAAC AACAAAAAAC AAAACAATGA AAGAAATGAA TCTTGCCGCC 349 CCCAGAGTGG AGAGAGA 8 | ||||||| |||| || ACAAGAGTGG AGAGGGA 366 hqPGS_16828254-_6020386- (204 8) ******************************************************************************** EST sequence 2 +strand (File: 5804755+) 1 CCAGCAGCAA ATAAAGCTCC ATCATAGTAG GTTCACAAAA CGACTGACTG ATTTGTCTTA 61 GCACAAAACT CTGGATATAG CTAGAAACCA CGATAGATGG CCTACTGAAG TGCAGGTTTC 121 CAAGACGAGC TATTGGACAC ATGGCAAACG GTGACGACGA ACTAGGATGT GACATCTCTC 181 CATGAACTCA CACGCATCGA AGAATCGTAA CACAACCATG TCGTCACCAC CATCCACAAT 241 CCCCATCAGC CTACTTGGAT CTCTGCCTCA TCTTTCGGCG CTTCCTCTTC AGCCTCCTCA 301 TGCGCTTCTT CTTCCACTTG GCCCTCATAG TCGCCTCCTT GCGGGCTCTC CTTGGCGCGT 361 CTCCTGCTGC TGAGTCGGCG GCGGGTTCAC GATATGGGTT TTTTTTTATG GACAAATAAT 421 TTACCTATTC CTTGGGTTCG CCTCTACTGA CAGCAATCAA TCAATCATTT ACAGGGGGGG 481 TTTGGGTAGA TTAACCTTGG ACACGACAAT ACC Predicted gene structure (within gDNA segment 484 to 1): Exon 1 204 98 ( 107 n); cDNA 407 513 ( 107 n); score: 0.953 MATCH 16828254- 5804755+ 0.953 107 0.221 G PGS_16828254-_5804755+ (204 98) Alignment (genomic DNA sequence = upper lines): TATGGACAAA TAATTTACCT ATTCCTTGTG TTCGCCTCTA CTGACAGCAA TCAATCAATC 145 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TATGGACAAA TAATTTACCT ATTCCTTGGG TTCGCCTCTA CTGACAGCAA TCAATCAATC 466 ATTTACAGTG TGTGTTTGTG TAGATTAACC TTGGACACGA CAATACC 98 |||||||| | | ||||| | |||||||||| |||||||||| ||||||| ATTTACAGGG GGGGTTTGGG TAGATTAACC TTGGACACGA CAATACC 513 hqPGS_16828254-_5804755+ (204 98) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 484: PGL 1 (- strand): 204 8 AGS-1 (204 8) SCR (e 0.970) Exon 1 204 8 ( 197 n); score: 0.970 PGS (204 8) 6020386- PGS (204 98) 5804755+ 3-phase translation of AGS-1 (-strand): . . . . . . 204 TATGGACAAATAATTTACCTATTCCTTGTGTTCGCCTCTACTGACAGCAATCAATCAATC Y G Q I I Y L F L V F A S T D S N Q S I M D K - F T Y S L C S P L L T A I N Q S W T N N L P I P C V R L Y - Q Q S I N . . . . . . 144 ATTTACAGTGTGTGTTTGTGTAGATTAACCTTGGACACGACAATACCTTGTTTTTGTTCC I Y S V C L C R L T L D T T I P C F C S F T V C V C V D - P W T R Q Y L V F V P H L Q C V F V - I N L G H D N T L F L F . . . . . . 84 TATCCTTCCTCAACAACAACAACAAAAGACAAAACAATGAAAGAAATGAATCTTGCCCGC Y P S S T T T T K D K T M K E M N L A R I L P Q Q Q Q Q K T K Q - K K - I L P A L S F L N N N N K R Q N N E R N E S C P . . 24 CCCAGAGTGGAGAGAGA P R V E R P E W R E P Q S G E R Maximal non-overlapping open reading frames (>= 64 codons): >16828254-_PGL-1_AGS-1_PPS_1 (204 10) (frame '1'; 195 bp, 65 residues) 1 YGQIIYLFLV FASTDSNQSI IYSVCLCRLT LDTTIPCFCS YPSSTTTTKD KTMKEMNLAR 61 PRVER 3-phase translation of AGS-1 (+strand): . . . . . . 8 TCTCTCTCCACTCTGGGGCGGGCAAGATTCATTTCTTTCATTGTTTTGTCTTTTGTTGTT S L S T L G R A R F I S F I V L S F V V L S P L W G G Q D S F L S L F C L L L L S L H S G A G K I H F F H C F V F C C . . . . . . 68 GTTGTTGAGGAAGGATAGGAACAAAAACAAGGTATTGTCGTGTCCAAGGTTAATCTACAC V V E E G - E Q K Q G I V V S K V N L H L L R K D R N K N K V L S C P R L I Y T C C - G R I G T K T R Y C R V Q G - S T . . . . . . 128 AAACACACACTGTAAATGATTGATTGATTGCTGTCAGTAGAGGCGAACACAAGGAATAGG K H T L - M I D - L L S V E A N T R N R N T H C K - L I D C C Q - R R T Q G I G Q T H T V N D - L I A V S R G E H K E - . . 188 TAAATTATTTGTCCATA - I I C P K L F V H V N Y L S I Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:17 2003 ________________________________________________________________________________ Sequence 118: 16828382, from 1 to 186, both strands analyzed. ... started at: Mon Nov 10 17:49:17 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:17 2003 ________________________________________________________________________________ Sequence 119: 16830355, from 1 to 401, both strands analyzed. ... started at: Mon Nov 10 17:49:17 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:17 2003 ________________________________________________________________________________ Sequence 120: 16830713, from 1 to 528, both strands analyzed. ... started at: Mon Nov 10 17:49:17 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 13389353-) 1 CCTTCTCGTT CCCTACTCCA ATCGAATCGG AATTCGACCG CCAGGCAGTC TAGAGGAAGT 61 CGGAATTGGG GATCATTGCT AGCCTATCCC GCCGCCGATC TGCGTCTGCC TGGTGGTGGT 121 GGTGGGAGCG AGAGCCGAGA GGGAAGAGGC AAACCCTAGA A Predicted gene structure (within gDNA segment 1 to 509): Exon 1 49 209 ( 161 n); cDNA 1 161 ( 161 n); score: 1.000 MATCH 16830713+ 13389353- 1.000 161 1.000 C PGS_16830713+_13389353- (49 209) Alignment (genomic DNA sequence = upper lines): CCTTCTCGTT CCCTACTCCA ATCGAATCGG AATTCGACCG CCAGGCAGTC TAGAGGAAGT 108 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCTCGTT CCCTACTCCA ATCGAATCGG AATTCGACCG CCAGGCAGTC TAGAGGAAGT 60 CGGAATTGGG GATCATTGCT AGCCTATCCC GCCGCCGATC TGCGTCTGCC TGGTGGTGGT 168 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAATTGGG GATCATTGCT AGCCTATCCC GCCGCCGATC TGCGTCTGCC TGGTGGTGGT 120 GGTGGGAGCG AGAGCCGAGA GGGAAGAGGC AAACCCTAGA A 209 |||||||||| |||||||||| |||||||||| |||||||||| | GGTGGGAGCG AGAGCCGAGA GGGAAGAGGC AAACCCTAGA A 161 hqPGS_16830713+_13389353- (49 209) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 528: PGL 1 (+ strand): 49 209 AGS-1 (49 209) SCR (e 1.000) Exon 1 49 209 ( 161 n); score: 1.000 PGS (49 209) 13389353- 3-phase translation of AGS-1 (+strand): . . . . . . 49 CCTTCTCGTTCCCTACTCCAATCGAATCGGAATTCGACCGCCAGGCAGTCTAGAGGAAGT P S R S L L Q S N R N S T A R Q S R G S L L V P Y S N R I G I R P P G S L E E V F S F P T P I E S E F D R Q A V - R K . . . . . . 109 CGGAATTGGGGATCATTGCTAGCCTATCCCGCCGCCGATCTGCGTCTGCCTGGTGGTGGT R N W G S L L A Y P A A D L R L P G G G G I G D H C - P I P P P I C V C L V V V S E L G I I A S L S R R R S A S A W W W . . . . . 169 GGTGGGAGCGAGAGCCGAGAGGGAAGAGGCAAACCCTAGAA G G S E S R E G R G K P - V G A R A E R E E A N P R W W E R E P R G K R Q T L E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 209 TTCTAGGGTTTGCCTCTTCCCTCTCGGCTCTCGCTCCCACCACCACCACCAGGCAGACGC F - G L P L P S R L S L P P P P P G R R S R V C L F P L G S R S H H H H Q A D A L G F A S S L S A L A P T T T T R Q T . . . . . . 149 AGATCGGCGGCGGGATAGGCTAGCAATGATCCCCAATTCCGACTTCCTCTAGACTGCCTG R S A A G - A S N D P Q F R L P L D C L D R R R D R L A M I P N S D F L - T A W Q I G G G I G - Q - S P I P T S S R L P . . . . . 89 GCGGTCGAATTCCGATTCGATTGGAGTAGGGAACGAGAAGG A V E F R F D W S R E R E R S N S D S I G V G N E K G G R I P I R L E - G T R R Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:18 2003 ________________________________________________________________________________ Sequence 121: 16831160, from 1 to 341, both strands analyzed. ... started at: Mon Nov 10 17:49:18 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 5740625+) 1 TTTTTAAAAT TTACAGTGTT ATCGGATAAC GTTTACATTA CCTTTTCAAA TTTCACAACC 61 AAACGGTTCC TAGGGTTAGA TCCCTCAGGC TCCTCATCAA GGGTCCAGGT AGTTTGCGGC 121 CATCATCAGC TCCAGGGNGA TCTCGGGTTC GATCAGAAAC TTTGCTGTTT CCTTGCCACT 181 GGAATAATGG AGCGACCAAT AGAAGTACTG GCAGATCTTT TCGAGGATAT TGGGGGGGAT 241 CTCCGGGAAG CGAACCTCGC CCTGGCGCGT CTCGGAAAAA CCGCCTGGCG ATGGGAGCAT 301 GTTGCGTAGG GGGGTGGAGA CCATGGCGGC CTTTTTGGCG ACGACGAATT CGAAGCCCTC 361 GGCGCTGATG AGCTTGACGA CGCCTGCGGG GGCCTCCTCC TCCTCCTCCT GGGGCTGGNG 421 GTGCTCACGC GGAGCCATCC TGCGACCTGC AACGGATTGG ATTGGGGTTG A Predicted gene structure (within gDNA segment 1 to 341): Exon 1 2 183 ( 182 n); cDNA 284 471 ( 188 n); score: 0.890 MATCH 16831160+ 5740625+ 0.890 182 0.534 G PGS_16831160+_5740625+ (2 183) Alignment (genomic DNA sequence = upper lines): CCTGGCGATG TGAGCATGTT GCGTAGGGTG TTGGAGACCA TGGCGGCCTT CTTGTCGACG 61 |||||||||| ||||||||| |||||||| | ||||||||| |||||||||| ||| ||||| CCTGGCGATG GGAGCATGTT GCGTAGGGGG GTGGAGACCA TGGCGGCCTT TTTGGCGACG 343 ACGAATTCGA AGCCCTCGGC GCTGATGAGC TTGACGACGC CTGCGGTG-- ----TCCTCC 115 |||||||||| |||||||||| |||||||||| |||||||||| |||||| | |||||| ACGAATTCGA AGCCCTCGGC GCTGATGAGC TTGACGACGC CTGCGGGGGC CTCCTCCTCC 403 TCCTCCTGGG GCTGGTGGTG CTCACGCGAA GCCATCCTGC GACCTGCAAC GGATTGGATT 175 |||||||||| ||||| |||| |||||||| | |||||||||| |||||||||| |||||||||| TCCTCCTGGG GCTGGNGGTG CTCACGCGGA GCCATCCTGC GACCTGCAAC GGATTGGATT 463 GGGGTTGA 183 |||||||| GGGGTTGA 471 hqPGS_16831160+_5740625+ (2 183) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 341: PGL 1 (+ strand): 2 183 AGS-1 (2 183) SCR (e 0.890) Exon 1 2 183 ( 182 n); score: 0.890 PGS (2 183) 5740625+ 3-phase translation of AGS-1 (+strand): . . . . . . 2 CCTGGCGATGTGAGCATGTTGCGTAGGGTGTTGGAGACCATGGCGGCCTTCTTGTCGACG P G D V S M L R R V L E T M A A F L S T L A M - A C C V G C W R P W R P S C R R W R C E H V A - G V G D H G G L L V D . . . . . . 62 ACGAATTCGAAGCCCTCGGCGCTGATGAGCTTGACGACGCCTGCGGTGTCCTCCTCCTCC T N S K P S A L M S L T T P A V S S S S R I R S P R R - - A - R R L R C P P P P D E F E A L G A D E L D D A C G V L L L . . . . . . 122 TGGGGCTGGTGGTGCTCACGCGAAGCCATCCTGCGACCTGCAACGGATTGGATTGGGGTT W G W W C S R E A I L R P A T D W I G V G A G G A H A K P S C D L Q R I G L G L L G L V V L T R S H P A T C N G L D W G . 182 GA - Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 183 TCAACCCCAATCCAATCCGTTGCAGGTCGCAGGATGGCTTCGCGTGAGCACCACCAGCCC S T P I Q S V A G R R M A S R E H H Q P Q P Q S N P L Q V A G W L R V S T T S P N P N P I R C R S Q D G F A - A P P A . . . . . . 123 CAGGAGGAGGAGGACACCGCAGGCGTCGTCAAGCTCATCAGCGCCGAGGGCTTCGAATTC Q E E E D T A G V V K L I S A E G F E F R R R R T P Q A S S S S S A P R A S N S P G G G G H R R R R Q A H Q R R G L R I . . . . . . 63 GTCGTCGACAAGAAGGCCGCCATGGTCTCCAACACCCTACGCAACATGCTCACATCGCCA V V D K K A A M V S N T L R N M L T S P S S T R R P P W S P T P Y A T C S H R Q R R R Q E G R H G L Q H P T Q H A H I A . 3 GG R Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:18 2003 ________________________________________________________________________________ Sequence 122: 16832764, from 1 to 472, both strands analyzed. ... started at: Mon Nov 10 17:49:18 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:18 2003 ________________________________________________________________________________ Sequence 123: 16833933, from 1 to 500, both strands analyzed. ... started at: Mon Nov 10 17:49:18 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:18 2003 ________________________________________________________________________________ Sequence 124: 16835241, from 1 to 336, both strands analyzed. ... started at: Mon Nov 10 17:49:18 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 485614+) 1 GTACGACTGC AGGTACCGGT CCGGAATTCC CGGGTCGACC CACGCGTCCG GCTGATCAAC 61 AATGTTGCTA AGGCCCATGG TGGTTTCTCT GTGTTTGCTG GTGTTGGAGA ACGTACCCGT 121 GAAGGGAATG ACCTGTACAG AGAAATNATT GAAAGTGGTG TCATTAAGCT AGGTGACAAG 181 CAGAGTGAAA GCAAGTGTGC TCTTGTCTAC GGGCAGATGA ATGAGCCCCC GGGTGCTCGT 241 GCTCGTGTTG GGTTGACTGG TTTGACTGTT GCTGAACATT TCCGTGATGC TGAAGGACAA 301 GATGTGCTTC TGTTTATTGA CAACATTTTC CGTTTCACCC AGGCAAATTC TGAGGTGTCT 361 GCTCTTCTTG GACGTATCCC ATCTGCTGTG GGATACCAGC CAACCCTTGC CACTGATCTT 421 GGAGGACTGC AAGAGCGTAT TACGGGCAAA CAAAGAAG Predicted gene structure (within gDNA segment 1 to 336): Exon 1 5 148 ( 144 n); cDNA 318 458 ( 141 n); score: 0.882 MATCH 16835241+ 485614+ 0.882 144 0.429 G PGS_16835241+_485614+ (5 148) Alignment (genomic DNA sequence = upper lines): TGGTGGCATT GTTGCGCTCT TGATTCCAGG CAAATTCTGA GGTGTCTGCT CTTCTTGGAC 64 || |||| || || | | | | ||||| |||||||||| |||||||||| |||||||||| TGACAACATT -TTCCG-T-T TCA-CCCAGG CAAATTCTGA GGTGTCTGCT CTTCTTGGAC 373 GTATCCCATC TGCTGTGGGA TACCAGCCAA CCCTTGCCAC TGATCTTGGA GGACTGCAAG 124 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATCCCATC TGCTGTGGGA TACCAGCCAA CCCTTGCCAC TGATCTTGGA GGACTGCAAG 433 AGCTGTATTA C-GAC-AACA AAGAAG 148 ||| |||||| | | | |||| |||||| AGC-GTATTA CGGGCAAACA AAGAAG 458 hqPGS_16835241+_485614+ (5 148) ******************************************************************************** EST sequence 2 +strand (File: 1298516+) 1 TCTCCAGGCT ATATATGTGC CTGCTGATGA CTTGACAGAT CCTGCTCCTG CTACTACCTT 61 TGCCCATCTT GATGCTACAA CTGTGTTNNC ACGGCAGATC TCTGAGCTTG GTATTTATCC 121 TGCTGTCGAT CCACTGGATT CCACATCAAG AATGCTTTCT CCCCACGTGC TGGGTGAGGA 181 TCATTACAAT ACTGCTCGTG GTGTTCAGAA GGTTCTTCAG AACTACAAAA ATCTTCAGGA 241 TATTATTGCT ATCTTGGGTA TGGATGAGCT CAGTGAGGAT GACAGT Predicted gene structure (within gDNA segment 1 to 336): Exon 1 165 287 ( 123 n); cDNA 3 126 ( 124 n); score: 0.854 MATCH 16835241+ 1298516+ 0.854 123 0.430 C PGS_16835241+_1298516+ (165 287) Alignment (genomic DNA sequence = upper lines): TCCAGGCTAT ATATGTGCCT GCTGATGACT TGACAGATCC TGCTCCTGCT ACTACCTTTG 224 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGGCTAT ATATGTGCCT GCTGATGACT TGACAGATCC TGCTCCTGCT ACTACCTTTG 62 CCCATCTTGA TGCT-CACTT GTGTTGTCAC GGCAGGTTTG TCCATTTGGT TTATGTGCTG 283 |||||||||| |||| || | ||||| ||| ||||| | | | ||||| | | | ||| CCCATCTTGA TGCTACAACT GTGTTNNCAC GGCAGATCTC TGAGCTTGGT ATTTATCCTG 122 TTGT 287 ||| CTGT 126 hqPGS_16835241+_1298516+ (165 287) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 336: PGL 1 (+ strand): 5 287 AGS-1 (5 148) SCR (e 0.882) Exon 1 5 148 ( 144 n); score: 0.882 PGS (5 148) 485614+ 3-phase translation of AGS-1 (+strand): . . . . . . 5 TGGTGGCATTGTTGCGCTCTTGATTCCAGGCAAATTCTGAGGTGTCTGCTCTTCTTGGAC W W H C C A L D S R Q I L R C L L F L D G G I V A L L I P G K F - G V C S S W T V A L L R S - F Q A N S E V S A L L G . . . . . . 65 GTATCCCATCTGCTGTGGGATACCAGCCAACCCTTGCCACTGATCTTGGAGGACTGCAAG V S H L L W D T S Q P L P L I L E D C K Y P I C C G I P A N P C H - S W R T A R R I P S A V G Y Q P T L A T D L G G L Q . . . 125 AGCTGTATTACGACAACAAAGAAG S C I T T T K K A V L R Q Q R E L Y Y D N K E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 148 CTTCTTTGTTGTCGTAATACAGCTCTTGCAGTCCTCCAAGATCAGTGGCAAGGGTTGGCT L L C C R N T A L A V L Q D Q W Q G L A F F V V V I Q L L Q S S K I S G K G W L S L L S - Y S S C S P P R S V A R V G . . . . . . 88 GGTATCCCACAGCAGATGGGATACGTCCAAGAAGAGCAGACACCTCAGAATTTGCCTGGA G I P Q Q M G Y V Q E E Q T P Q N L P G V S H S R W D T S K K S R H L R I C L E W Y P T A D G I R P R R A D T S E F A W . . . 28 ATCAAGAGCGCAACAATGCCACCA I K S A T M P P S R A Q Q C H N Q E R N N A T Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (165 287) SCR (e 0.854) Exon 1 165 287 ( 123 n); score: 0.854 PGS (165 287) 1298516+ 3-phase translation of AGS-2 (+strand): . . . . . . 165 TCCAGGCTATATATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACTACCTTTG S R L Y M C L L M T - Q I L L L L L P L P G Y I C A C - - L D R S C S C Y Y L C Q A I Y V P A D D L T D P A P A T T F . . . . . . 225 CCCATCTTGATGCTCACTTGTGTTGTCACGGCAGGTTTGTCCATTTGGTTTATGTGCTGT P I L M L T C V V T A G L S I W F M C C P S - C S L V L S R Q V C P F G L C A V A H L D A H L C C H G R F V H L V Y V L . 285 TGT C L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 287 ACAACAGCACATAAACCAAATGGACAAACCTGCCGTGACAACACAAGTGAGCATCAAGAT T T A H K P N G Q T C R D N T S E H Q D Q Q H I N Q M D K P A V T T Q V S I K M N S T - T K W T N L P - Q H K - A S R . . . . . . 227 GGGCAAAGGTAGTAGCAGGAGCAGGATCTGTCAAGTCATCAGCAGGCACATATATAGCCT G Q R - - Q E Q D L S S H Q Q A H I - P G K G S S R S R I C Q V I S R H I Y S L W A K V V A G A G S V K S S A G T Y I A . 167 GGA G W Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:18 2003 ________________________________________________________________________________ Sequence 125: 16836119, from 1 to 545, both strands analyzed. ... started at: Mon Nov 10 17:49:18 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:19 2003 ________________________________________________________________________________ Sequence 126: 16836315, from 1 to 177, both strands analyzed. ... started at: Mon Nov 10 17:49:19 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:19 2003 ________________________________________________________________________________ Sequence 127: 16836981, from 1 to 395, both strands analyzed. ... started at: Mon Nov 10 17:49:19 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:19 2003 ________________________________________________________________________________ Sequence 128: 16839696, from 1 to 257, both strands analyzed. ... started at: Mon Nov 10 17:49:19 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:19 2003 ________________________________________________________________________________ Sequence 129: 16840971, from 1 to 290, both strands analyzed. ... started at: Mon Nov 10 17:49:19 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 7217072-) 1 ACAATTCGAC TGCACGTGAA AATCTATCAC TGAGTTTTAC AACAGCAGCA GCAGCAGGTC 61 GACTGCGCCC ATCACCCATG TACGGTAGTT GCAAAGTCCA GTTCTCGGGA CCAATGGATG 121 CAGGCGCCTA ATAATCCGGC AGAGAACGAT TTTTTTTCCG TCGGCGCTGT CCAAGCCCTT 181 CTAGGAAAGT GCAGAGGTCG TGGCGACAGA GAATACCTAA ACCTGCTCCA GTTGGTCCGG 241 TGGGACAAGC GGCTGCTGCT CGTCGGCTGC GCTTGACGAT CTATCCATGC CACACATCCC 301 CGGGGACTTT ATAGGCACGA GAGAGGCCTT GTTCAGGGCA GCGAAAGCCT TGTTTCCTGC 361 ACCGTTGCTC CCTAAACAAA TGGTATCACC TCGGCCATGC CAGACACCAC ACTGGACATT 421 ATTCATCTCC AAAGTTCTAG CCTCCTGGCA CAGCGTACAG CAAGGACATA TGAGATGGAG 481 AACACAATCG TCCA Predicted gene structure (within gDNA segment 290 to 1): Exon 1 287 1 ( 287 n); cDNA 167 452 ( 286 n); score: 0.955 MATCH 16840971- 7217072- 0.955 287 0.990 G PGS_16840971-_7217072- (287 1) Alignment (genomic DNA sequence = upper lines): CTGAGCAACG CGTTCTAGGA AAGTGCAGAG GTCGTGGCGA CAGAGAATAC CTAAACCTGC 228 ||| ||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCCAAGC CCTTCTAGGA AAGTGCAGAG GTCGTGGCGA CAGAGAATAC CTAAACCTGC 226 TCCAGTTGGT CCGGTGGGAC AAGCGGCTGC TGCTCGTCAG CTGCGCTTGA CGATCTATCC 168 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TCCAGTTGGT CCGGTGGGAC AAGCGGCTGC TGCTCGTCGG CTGCGCTTGA CGATCTATCC 286 ATGCCACACA GCCCCGGGGA CTTTACAGGC ACGAGAGAGG CCTTGTTCAG GGCAGCGAAG 108 |||||||||| ||||||||| ||||| |||| |||||||||| |||||||||| ||||||||| ATGCCACACA TCCCCGGGGA CTTTATAGGC ACGAGAGAGG CCTTGTTCAG GGCAGCGAAA 346 GCCTTGTTTC CTGCACCGTT GCTCCCTAAA CAAATGGTAT CACCTCGGCC ATGCCAGACA 48 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTTGTTTC CTGCACCGTT GCTCCCTAAA CAAATGGTAT CACCTCGGCC ATGCCAGACA 406 CCACACTGGA CATTATTCAT CTCCAAAGTT CTAGCCTCCT GAATTCA 1 |||||||||| |||||||||| |||||||||| |||||||||| | || CCACACTGGA CATTATTCAT CTCCAAAGTT CTAGCCTCCT G-GCACA 452 hqPGS_16840971-_7217072- (287 1) ******************************************************************************** EST sequence 2 +strand (File: 7217071+) 1 GGGACATTCT GAAGATACAG TCTTCGACCT AAACAATTCG ACTGCACGTG AAAATCTATC 61 ACTGAGTTTT ACAACAGCAG CAGCAGCAGG TCGACTGCGC CCATCACCCA TGTACGGTAG 121 TTGCAAAGTC CAGTTTTCGG GACCAATGGA TGCAGGCGCC TAATAATCCG GCAGAGAACG 181 ATTTTTTTTC CGTCGGCGCT GTCCAAGCCC TTCTAGGAAA GTGCAGAGGT CGTGGCGACA 241 GAGAATACCT AAACCTGCTC CAGTTGGTCC GGTGGGACAA GCGGCTGCTG CTCGTCGGCT 301 GCGCTTGACG ATCTATCCAT GCCACACATC CCCGGGGACT TTATAGGCAC GAGAGAGGCC 361 TTGTTCAGGG CAGCGAAAGC CTTGGTTCCT GCACCGNTGC TCCCTAAACA AATGGAATCA 421 CCTCGGCCAT GCCAGACACC ACACTGGACA TTATTCATCT CCAAAGTTCT AGCC Predicted gene structure (within gDNA segment 290 to 1): Exon 1 287 12 ( 276 n); cDNA 199 474 ( 276 n); score: 0.957 MATCH 16840971- 7217071+ 0.957 276 0.952 G PGS_16840971-_7217071+ (287 12) Alignment (genomic DNA sequence = upper lines): CTGAGCAACG CGTTCTAGGA AAGTGCAGAG GTCGTGGCGA CAGAGAATAC CTAAACCTGC 228 ||| ||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCCAAGC CCTTCTAGGA AAGTGCAGAG GTCGTGGCGA CAGAGAATAC CTAAACCTGC 258 TCCAGTTGGT CCGGTGGGAC AAGCGGCTGC TGCTCGTCAG CTGCGCTTGA CGATCTATCC 168 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TCCAGTTGGT CCGGTGGGAC AAGCGGCTGC TGCTCGTCGG CTGCGCTTGA CGATCTATCC 318 ATGCCACACA GCCCCGGGGA CTTTACAGGC ACGAGAGAGG CCTTGTTCAG GGCAGCGAAG 108 |||||||||| ||||||||| ||||| |||| |||||||||| |||||||||| ||||||||| ATGCCACACA TCCCCGGGGA CTTTATAGGC ACGAGAGAGG CCTTGTTCAG GGCAGCGAAA 378 GCCTTGTTTC CTGCACCGTT GCTCCCTAAA CAAATGGTAT CACCTCGGCC ATGCCAGACA 48 |||||| ||| |||||||| | |||||||||| ||||||| || |||||||||| |||||||||| GCCTTGGTTC CTGCACCGNT GCTCCCTAAA CAAATGGAAT CACCTCGGCC ATGCCAGACA 438 CCACACTGGA CATTATTCAT CTCCAAAGTT CTAGCC 12 |||||||||| |||||||||| |||||||||| |||||| CCACACTGGA CATTATTCAT CTCCAAAGTT CTAGCC 474 hqPGS_16840971-_7217071+ (287 12) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 290: PGL 1 (- strand): 287 1 AGS-1 (287 1) SCR (e 0.957) Exon 1 287 1 ( 287 n); score: 0.957 PGS (287 1) 7217072- PGS (287 12) 7217071+ 3-phase translation of AGS-1 (-strand): . . . . . . 287 CTGAGCAACGCGTTCTAGGAAAGTGCAGAGGTCGTGGCGACAGAGAATACCTAAACCTGC L S N A F - E S A E V V A T E N T - T C - A T R S R K V Q R S W R Q R I P K P A E Q R V L G K C R G R G D R E Y L N L . . . . . . 227 TCCAGTTGGTCCGGTGGGACAAGCGGCTGCTGCTCGTCAGCTGCGCTTGACGATCTATCC S S W S G G T S G C C S S A A L D D L S P V G P V G Q A A A A R Q L R L T I Y P L Q L V R W D K R L L L V S C A - R S I . . . . . . 167 ATGCCACACAGCCCCGGGGACTTTACAGGCACGAGAGAGGCCTTGTTCAGGGCAGCGAAG M P H S P G D F T G T R E A L F R A A K C H T A P G T L Q A R E R P C S G Q R R H A T Q P R G L Y R H E R G L V Q G S E . . . . . . 107 GCCTTGTTTCCTGCACCGTTGCTCCCTAAACAAATGGTATCACCTCGGCCATGCCAGACA A L F P A P L L P K Q M V S P R P C Q T P C F L H R C S L N K W Y H L G H A R H G L V S C T V A P - T N G I T S A M P D . . . . . 47 CCACACTGGACATTATTCATCTCCAAAGTTCTAGCCTCCTGAATTCA P H W T L F I S K V L A S - I H T G H Y S S P K F - P P E F T T L D I I H L Q S S S L L N S Maximal non-overlapping open reading frames (>= 64 codons): >16840971-_PGL-1_AGS-1_PPS_1 (283 14) (frame '2'; 267 bp, 89 residues) 1 ATRSRKVQRS WRQRIPKPAP VGPVGQAAAA RQLRLTIYPC HTAPGTLQAR ERPCSGQRRP 61 CFLHRCSLNK WYHLGHARHH TGHYSSPKF- 3-phase translation of AGS-1 (+strand): . . . . . . 1 TGAATTCAGGAGGCTAGAACTTTGGAGATGAATAATGTCCAGTGTGGTGTCTGGCATGGC - I Q E A R T L E M N N V Q C G V W H G E F R R L E L W R - I M S S V V S G M A N S G G - N F G D E - C P V W C L A W . . . . . . 61 CGAGGTGATACCATTTGTTTAGGGAGCAACGGTGCAGGAAACAAGGCCTTCGCTGCCCTG R G D T I C L G S N G A G N K A F A A L E V I P F V - G A T V Q E T R P S L P - P R - Y H L F R E Q R C R K Q G L R C P . . . . . . 121 AACAAGGCCTCTCTCGTGCCTGTAAAGTCCCCGGGGCTGTGTGGCATGGATAGATCGTCA N K A S L V P V K S P G L C G M D R S S T R P L S C L - S P R G C V A W I D R Q E Q G L S R A C K V P G A V W H G - I V . . . . . . 181 AGCGCAGCTGACGAGCAGCAGCCGCTTGTCCCACCGGACCAACTGGAGCAGGTTTAGGTA S A A D E Q Q P L V P P D Q L E Q V - V A Q L T S S S R L S H R T N W S R F R Y K R S - R A A A A C P T G P T G A G L G . . . . . 241 TTCTCTGTCGCCACGACCTCTGCACTTTCCTAGAACGCGTTGCTCAG F S V A T T S A L S - N A L L S L S P R P L H F P R T R C S I L C R H D L C T F L E R V A Q Maximal non-overlapping open reading frames (>= 64 codons): >16840971+_PGL-1_AGS-1_PPS_1 (4 237) (frame '1'; 231 bp, 77 residues) 1 IQEARTLEMN NVQCGVWHGR GDTICLGSNG AGNKAFAALN KASLVPVKSP GLCGMDRSSS 61 AADEQQPLVP PDQLEQV- ... finished at: Mon Nov 10 17:49:20 2003 ________________________________________________________________________________ Sequence 130: 16841800, from 1 to 283, both strands analyzed. ... started at: Mon Nov 10 17:49:20 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: 6626507-) 1 CTCGTCGTCT CCAGTCTCCT CGGCGTCCNT GCGCTTCTTC TTGTAGGCCA TTTTCATGTG 61 ATCGAAGCTA TCAAGCGGCC TGATGCCCAG AAGCTCATAC GGGTTCTCCT CGTCGCCGAA 121 CTCCGCGCTC CCGGCCNGCC GCCGCCGCGT CCGCTGCCAC CACGACCGCG CCGCGCCGCC 181 GCTTCACGGC TGACGCGACG AGTCGCAGAG ACTGACGCAT GGGCCGGCCG GCGTGACGAG 241 GGAGCGGAAG GAAGCCGCCG CGCGAGAAGG ACGATGCGAG AGCGAATGTG GGCGCCGTCG 301 CCGTCGCGGA GGCCATTGGT GTCTCAAAGC CTAGGTTTTA GCGCAGTCTC ACGCGACGGC 361 GAGCCTCG Predicted gene structure (within gDNA segment 283 to 1): Exon 1 240 81 ( 160 n); cDNA 204 363 ( 160 n); score: 0.981 MATCH 16841800- 6626507- 0.981 160 0.565 G PGS_16841800-_6626507- (240 81) Alignment (genomic DNA sequence = upper lines): CGCAGAGACT GGAGCATGGG CCGGCCGGCG CGACGAGGGA GCGGAAGGAA GCCGCCGCGC 181 |||||||||| | ||||||| |||||||||| ||||||||| |||||||||| |||||||||| CGCAGAGACT GACGCATGGG CCGGCCGGCG TGACGAGGGA GCGGAAGGAA GCCGCCGCGC 263 GAGAAGGACG ATGCGAGAGC GAATGTGGGC GCCGTCGCCG TCGCGGAGGC CATTGGTGTC 121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAGGACG ATGCGAGAGC GAATGTGGGC GCCGTCGCCG TCGCGGAGGC CATTGGTGTC 323 TCAAAGCCTA GGTTTTAGCG CAGTCTCACG CGACGGCGAG 81 |||||||||| |||||||||| |||||||||| |||||||||| TCAAAGCCTA GGTTTTAGCG CAGTCTCACG CGACGGCGAG 363 hqPGS_16841800-_6626507- (240 81) ******************************************************************************** EST sequence 2 -strand (File: 7844357-) 1 TCCCTTCTTC CGATACTGCA GCTGCTGCAT CATGACAGTG TCATAGGCCC TGTCCAACTT 61 GGCAAGGAAT TCATCGTCTC CAGTCTCCTC GGCGTCCTTG CGCTTCTTCT TGTAGGCCAT 121 TTTCATGTGA TCGAAGCTAT CTAGCGGCCT GATGCCCAGA AGCTCATACG GGTTCTCCTC 181 GTCGCCGAAC TCCGCGCTCC CGGCCGCCGC CGCCGCGTCC GCTGCCACCG CGACCGCGCC 241 GCGCCGCCGC TTCACGACTA ACACGACGAG CCGCAGAGAC TGGAGCATGG GCCGGCCGGC 301 GCGACGAGGG AGCGGAAGGA AGCCGCCGCG CGAGAAGGAT CGATGCGAGA GCGAATGTGG 361 GCGCCGTCGC CGTCGCGGAG GCCATTGGTG TCTCAAAGCC TAGGTTTTAG GGCAGTCTCA 421 CGCGACGGCG AG Predicted gene structure (within gDNA segment 283 to 1): Exon 1 240 81 ( 160 n); cDNA 272 432 ( 161 n); score: 0.981 MATCH 16841800- 7844357- 0.981 160 0.565 G PGS_16841800-_7844357- (240 81) Alignment (genomic DNA sequence = upper lines): CGCAGAGACT GGAGCATGGG CCGGCCGGCG CGACGAGGGA GCGGAAGGAA GCCGCCGCGC 181 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCAGAGACT GGAGCATGGG CCGGCCGGCG CGACGAGGGA GCGGAAGGAA GCCGCCGCGC 331 GAGAAGGA-C GATGCGAGAG CGAATGTGGG CGCCGTCGCC GTCGCGGAGG CCATTGGTGT 122 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAGGATC GATGCGAGAG CGAATGTGGG CGCCGTCGCC GTCGCGGAGG CCATTGGTGT 391 CTCAAAGCCT AGGTTTTAGC GCAGTCTCAC GCGACGGCGA G 81 |||||||||| ||||||||| |||||||||| |||||||||| | CTCAAAGCCT AGGTTTTAGG GCAGTCTCAC GCGACGGCGA G 432 hqPGS_16841800-_7844357- (240 81) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 283: PGL 1 (- strand): 240 81 AGS-1 (240 81) SCR (e 0.981) Exon 1 240 81 ( 160 n); score: 0.981 PGS (240 81) 6626507- PGS (240 81) 7844357- 3-phase translation of AGS-1 (-strand): . . . . . . 240 CGCAGAGACTGGAGCATGGGCCGGCCGGCGCGACGAGGGAGCGGAAGGAAGCCGCCGCGC R R D W S M G R P A R R G S G R K P P R A E T G A W A G R R D E G A E G S R R A Q R L E H G P A G A T R E R K E A A A . . . . . . 180 GAGAAGGACGATGCGAGAGCGAATGTGGGCGCCGTCGCCGTCGCGGAGGCCATTGGTGTC E K D D A R A N V G A V A V A E A I G V R R T M R E R M W A P S P S R R P L V S R E G R C E S E C G R R R R R G G H W C . . . . 120 TCAAAGCCTAGGTTTTAGCGCAGTCTCACGCGACGGCGAG S K P R F - R S L T R R R Q S L G F S A V S R D G E L K A - V L A Q S H A T A Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 81 CTCGCCGTCGCGTGAGACTGCGCTAAAACCTAGGCTTTGAGACACCAATGGCCTCCGCGA L A V A - D C A K T - A L R H Q W P P R S P S R E T A L K P R L - D T N G L R D R R R V R L R - N L G F E T P M A S A . . . . . . 141 CGGCGACGGCGCCCACATTCGCTCTCGCATCGTCCTTCTCGCGCGGCGGCTTCCTTCCGC R R R R P H S L S H R P S R A A A S F R G D G A H I R S R I V L L A R R L P S A T A T A P T F A L A S S F S R G G F L P . . . . 201 TCCCTCGTCGCGCCGGCCGGCCCATGCTCCAGTCTCTGCG S L V A P A G P C S S L C P S S R R P A H A P V S A L P R R A G R P M L Q S L Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:20 2003 ________________________________________________________________________________ Sequence 131: 17572424, from 1 to 184, both strands analyzed. ... started at: Mon Nov 10 17:49:20 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:21 2003 ________________________________________________________________________________ Sequence 132: 17573450, from 1 to 154, both strands analyzed. ... started at: Mon Nov 10 17:49:21 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:21 2003 ________________________________________________________________________________ Sequence 133: 17576164, from 1 to 182, both strands analyzed. ... started at: Mon Nov 10 17:49:21 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 5901241+) 1 GAATTCGGCA CCAGGACAAC CGCTGCGTAA ACGAATCCAT CGCCATGGCG TCTCGTCTCG 61 TTGCGGCGGC GGCCTCCTCC TCCTCCCTCT CCTCAGCGTC CCCCCTCGCT CGCCTAATCT 121 CTCGCCGCGG CCTTGCCGGT GCCGCAGACG GCCATGGGTC TGCGAAGGTG CCCTTGTGGA 181 AAGATCCGTT GAGCCCGAGC AAGTGGAAGG AAGAACACTT TGTTCTAGCA AGCCTCTCAA 241 TGTGGGGGGT ATTTTTTATG GTGGTTACAA GCTTTTTAGT GGAAAGAAGG AAGCCAAGAC 301 TGAGGCGGCA TCACCACAGG CATAGGTGGC GGAGATGGAG TTATACCCGT ATCTGTGGCC 361 TGGCAACAAT GTTAAATAAA AGGAATGCTT TATGTTGTGC TTTCAAGTTG ATAAATTGTG 421 GCAACAGGAG ATTTTGCTTT ACGTAGGCAA TATATTGAGA AGCTACTCTT ACTCATCCAC 481 CATGAATAAT CTTTGCTGCA GTGGAGCTTC ATGTCGGCGA ACAATGCAAA CGTTGACTTC 541 TTTCATGCGA TTGAGTAGTT GATGTTTTAC TTCTG Predicted gene structure (within gDNA segment 1 to 182): Exon 1 17 149 ( 133 n); cDNA 15 147 ( 133 n); score: 1.000 MATCH 17576164+ 5901241+ 1.000 133 0.731 G PGS_17576164+_5901241+ (17 149) Alignment (genomic DNA sequence = upper lines): GACAACCGCT GCGTAAACGA ATCCATCGCC ATGGCGTCTC GTCTCGTTGC GGCGGCGGCC 76 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAACCGCT GCGTAAACGA ATCCATCGCC ATGGCGTCTC GTCTCGTTGC GGCGGCGGCC 74 TCCTCCTCCT CCCTCTCCTC AGCGTCCCCC CTCGCTCGCC TAATCTCTCG CCGCGGCCTT 136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCCTCCT CCCTCTCCTC AGCGTCCCCC CTCGCTCGCC TAATCTCTCG CCGCGGCCTT 134 GCCGGTGCCG CAG 149 |||||||||| ||| GCCGGTGCCG CAG 147 hqPGS_17576164+_5901241+ (17 149) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 182: PGL 1 (+ strand): 17 149 AGS-1 (17 149) SCR (e 1.000) Exon 1 17 149 ( 133 n); score: 1.000 PGS (17 149) 5901241+ 3-phase translation of AGS-1 (+strand): . . . . . . 17 GACAACCGCTGCGTAAACGAATCCATCGCCATGGCGTCTCGTCTCGTTGCGGCGGCGGCC D N R C V N E S I A M A S R L V A A A A T T A A - T N P S P W R L V S L R R R P Q P L R K R I H R H G V S S R C G G G . . . . . . 77 TCCTCCTCCTCCCTCTCCTCAGCGTCCCCCCTCGCTCGCCTAATCTCTCGCCGCGGCCTT S S S S L S S A S P L A R L I S R R G L P P P P S P Q R P P S L A - S L A A A L L L L L P L L S V P P R S P N L S P R P . . 137 GCCGGTGCCGCAG A G A A P V P Q C R C R Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 149 CTGCGGCACCGGCAAGGCCGCGGCGAGAGATTAGGCGAGCGAGGGGGGACGCTGAGGAGA L R H R Q G R G E R L G E R G G T L R R C G T G K A A A R D - A S E G G R - G E A A P A R P R R E I R R A R G D A E E . . . . . . 89 GGGAGGAGGAGGAGGCCGCCGCCGCAACGAGACGAGACGCCATGGCGATGGATTCGTTTA G R R R R P P P Q R D E T P W R W I R L G G G G G R R R N E T R R H G D G F V Y R E E E E A A A A T R R D A M A M D S F . . 29 CGCAGCGGTTGTC R S G C A A V V T Q R L Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:21 2003 ________________________________________________________________________________ Sequence 134: 17578199, from 1 to 437, both strands analyzed. ... started at: Mon Nov 10 17:49:21 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 3 ******************************************************************************** EST sequence 1 +strand (File: 6626502+) 1 GACGAGGGCA AGATGTTCGG GCGCGCGCCG AANAAGAGCG ACAACACCAA GTACTACGAG 61 ATCCTCGGGG TGCCCAAGTC GGCGTCCCAG GACGACCTCA AGAAGGCCTA CCGCAAGGCC 121 GCTATCAAGA ACCACCCCGA CAAGGGCGGT GACCCCGAGA AGTTCAAGGA GCTCGCACAA 181 GCCTATGAGG TTTTGAGTGA TCCAGAGAAA CGTGAGATTT ATGATCAGTA TGGTGAAGAT 241 GCCCTTAAGG AAGGAATGGG TGGTGGTGGA TCCCATGCTG ATCCATTTGA CATTTTCTCA 301 TCATTCTTTG GACCCTCTTT TGGAGGAGGT GGTGGAAGCA GCAGGGGAAG AAGGCAAAGG 361 AGGGGAGAAG ATGTAGTCCA CTCACTTAAA GTTTCTCTGG AAGATCTTTA CAATGGAATC 421 TCAAAGAAGC TCTCTCTTTC GCGCAATGTC ATCTGCTCCA AGTGCAAGGG CAAGGGCTCG 481 AAGTCTGGTG CTTCAATGAG GTGCCCTGGG TGCCAGGGCT Predicted gene structure (within gDNA segment 437 to 1): Exon 1 437 353 ( 85 n); cDNA 60 144 ( 85 n); score: 0.765 MATCH 17578199- 6626502+ 0.765 85 0.195 G PGS_17578199-_6626502+ (437 353) Alignment (genomic DNA sequence = upper lines): GATCCTAGGC GTCGACAAGG GCGCCACCGA TGACGACCTC AAGAAGGCCT ACCGCAAGCT 378 |||||| || || |||| || || | ||||||||| |||||||||| |||||||| GATCCTCGGG GTGCCCAAGT CGGCGTCCCA GGACGACCTC AAGAAGGCCT ACCGCAAGGC 119 CGCCATGAAA TGGCACCCCG ACAAG 353 ||| || || ||||||| ||||| CGCTATCAAG AACCACCCCG ACAAG 144 hqPGS_17578199-_6626502+ (437 353) ******************************************************************************** EST sequence 2 +strand (File: 6826972+) 1 CAAAGCCAAA GGCAAGATGT TCGGGCGCGC GCCGAAGAAG AGCGACAACA CCAAGTACTA 61 CGAGATCCTC GGGGTGCCCA AGTCGGCGTC CCAGGACGAC CTCAAGAAGG CCTACCGCAA 121 GGCAGCTATC AAGAACCACC CCGACAAGGG CGGTGACCCC GAGAAGTTCA AGGAGCTCGC 181 ACAAGCCTAT GAGGTTTTGA GTGATCCAGA GAAACGTGAG ATTTATGATC AGTATGGTGA 241 AGATGCCCTT AAGGAAGGAA TGGGTGGTGG TGGGTCCCAT GCTGATCCAT TTGACATTTT 301 CTCATCATTC TTTGGACCCT CTTTTGGAGG AGGTGGTGGA AGCAGCAGGG GAAGAAGGCA 361 AAGGAGGGGA GAAGATGTAG TCCACTCACT TAAAGTTTCT CTGGAAGATC TTTACAATGG 421 AATCTCAAAG AAGCTCTCTC TTTCGCGCAA TGTCATCTGC TCCAAGTGCA AGGGCAAGGG 481 CTCGAAGTCT GGTGCTTCAA TGAGGTGCCC TGGGTGCCAG GGCTCAGGTA TGAAAGTCAC 541 CATTCGTCAG C Predicted gene structure (within gDNA segment 437 to 1): Exon 1 437 353 ( 85 n); cDNA 64 148 ( 85 n); score: 0.753 MATCH 17578199- 6826972+ 0.753 85 0.195 G PGS_17578199-_6826972+ (437 353) Alignment (genomic DNA sequence = upper lines): GATCCTAGGC GTCGACAAGG GCGCCACCGA TGACGACCTC AAGAAGGCCT ACCGCAAGCT 378 |||||| || || |||| || || | ||||||||| |||||||||| |||||||| GATCCTCGGG GTGCCCAAGT CGGCGTCCCA GGACGACCTC AAGAAGGCCT ACCGCAAGGC 123 CGCCATGAAA TGGCACCCCG ACAAG 353 || || || ||||||| ||||| AGCTATCAAG AACCACCCCG ACAAG 148 hqPGS_17578199-_6826972+ (437 353) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 437: PGL 1 (- strand): 437 353 AGS-1 (437 353) SCR (e 0.765) Exon 1 437 353 ( 85 n); score: 0.765 PGS (437 353) 6626502+ PGS (437 353) 6826972+ 3-phase translation of AGS-1 (-strand): . . . . . . 437 GATCCTAGGCGTCGACAAGGGCGCCACCGATGACGACCTCAAGAAGGCCTACCGCAAGCT D P R R R Q G R H R - R P Q E G L P Q A I L G V D K G A T D D D L K K A Y R K L S - A S T R A P P M T T S R R P T A S . . . 377 CGCCATGAAATGGCACCCCGACAAG R H E M A P R Q A M K W H P D K S P - N G T P T Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 353 CTTGTCGGGGTGCCATTTCATGGCGAGCTTGCGGTAGGCCTTCTTGAGGTCGTCATCGGT L V G V P F H G E L A V G L L E V V I G L S G C H F M A S L R - A F L R S S S V C R G A I S W R A C G R P S - G R H R . . . 413 GGCGCCCTTGTCGACGCCTAGGATC G A L V D A - D A P L S T P R I W R P C R R L G Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:21 2003 ________________________________________________________________________________ Sequence 135: 17584001, from 1 to 81, both strands analyzed. ... started at: Mon Nov 10 17:49:21 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:22 2003 ________________________________________________________________________________ Sequence 136: 17586001, from 1 to 584, both strands analyzed. ... started at: Mon Nov 10 17:49:22 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 ******************************************************************************** EST sequence 1 -strand (File: 5055663-) 1 TAAAATGGTG ATCCAGACGA AGAGCGTGGA GTACATGCCG CTGTTCCTGT CACTGGCTTC 61 CCTGGTGAAC GGCATCTGCT GGACCGCCTA CGCGCTCATC CGCTTCGACC TCTACATCAC 121 CATCCCCAAC GGGCTGGGCG TGCTGTTCGC GCTGGCGCAG CTGCTCCTGT ACGCCATCTA 181 CTACAAGAAC ACCCAGAAGA TCGTGGAGGC ACGCAAGCGC AAGGCGGGCC AGGTCGCCAT 241 GACGGAGGTG GTCGTCGACG GCAGCAGGGC CTCCAACAAC AACAACAACG GCGGCAGCGG 301 CACCTACTGA TGATGATGAG TACGACGTAA TATTGTGCAT GGTGACCACG CCAACACAAC 361 ACCAAGCAAC ACGGGGGGCC AACGCCAACG CCGTGTGTAT CTAGCACTAG CAAGCGTCCT 421 TCTTCCTGAC GAAGGGATGA TCTATGCATC TTAAGCAGCC GTCGTCTTCT TCTTCTTCTT 481 CTGTTAATCC CTAGCTTTTA TTTTCTCCAT GCTTCCTAGT AACGAAGCTT TGCCCAAAAA 541 AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 1 to 584): Exon 1 189 308 ( 120 n); cDNA 2 121 ( 120 n); score: 1.000 PPA cDNA 536 553 MATCH 17586001+ 5055663- 1.000 120 0.217 C PGS_17586001+_5055663- (189 308) Alignment (genomic DNA sequence = upper lines): AAAATGGTGA TCCAGACGAA GAGCGTGGAG TACATGCCGC TGTTCCTGTC ACTGGCTTCC 248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATGGTGA TCCAGACGAA GAGCGTGGAG TACATGCCGC TGTTCCTGTC ACTGGCTTCC 61 CTGGTGAACG GCATCTGCTG GACCGCCTAC GCGCTCATCC GCTTCGACCT CTACATCACC 308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTGAACG GCATCTGCTG GACCGCCTAC GCGCTCATCC GCTTCGACCT CTACATCACC 121 hqPGS_17586001+_5055663- (189 308) ******************************************************************************** EST sequence 2 -strand (File: 6022002-) 1 CGCTGTTCCT GTCACTGGCT TCCCTGGTGA ACGGCATCTG CTGGACCGCC TACGCGATCA 61 TCCGCTTCGA CCTCTACATC ACCATCCCCA ACGGGCTGGG CGTGCTGTTC GCGCTGGCGC 121 AGCTGCTCCT GTACGCCATC TACTACAAGA ACACCCAGAA GATCGTGGAG GCACGCAAGC 181 GCAAGGCGGG CCAGGTCGCC ATGACGGAGG TGGTCGTCGA CGGCAGCAGG GCCTCCAACA 241 ACAACAACAA CGGCGGCAGC GGCCCCTACT GATGATGATG AGTACGACGT AATATTGTGC 301 ATGGTGACCA CGCCAACCCA ACCCCAAGCA ACCCGGGGGG CCAACGCCAA CGCCGTGTGT 361 ATCTAGCACT AGCAAGCGTC CTTCTTCCTG ACGAAGGGAT GATCTATGCA TCTTAAGCAG 421 CCGTCGTCTT CTTCTTCTTC TTCTGTTAAT CCCTAGCTTT TATTTTCTCC ATGCTTCCTA 481 GTAACGAAGC TTTGCCCACT GATTATTAGT ACTTAAAAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 1 to 584): Exon 1 226 308 ( 83 n); cDNA 1 83 ( 83 n); score: 0.988 PPA cDNA 515 533 MATCH 17586001+ 6022002- 0.988 83 0.156 C PGS_17586001+_6022002- (226 308) Alignment (genomic DNA sequence = upper lines): CGCTGTTCCT GTCACTGGCT TCCCTGGTGA ACGGCATCTG CTGGACCGCC TACGCGCTCA 285 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| CGCTGTTCCT GTCACTGGCT TCCCTGGTGA ACGGCATCTG CTGGACCGCC TACGCGATCA 60 TCCGCTTCGA CCTCTACATC ACC 308 |||||||||| |||||||||| ||| TCCGCTTCGA CCTCTACATC ACC 83 hqPGS_17586001+_6022002- (226 308) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 584: PGL 1 (+ strand): 189 308 AGS-1 (189 308) SCR (e 1.000) Exon 1 189 308 ( 120 n); score: 1.000 PGS (189 308) 5055663- PGS (226 308) 6022002- 3-phase translation of AGS-1 (+strand): . . . . . . 189 AAAATGGTGATCCAGACGAAGAGCGTGGAGTACATGCCGCTGTTCCTGTCACTGGCTTCC K M V I Q T K S V E Y M P L F L S L A S K W - S R R R A W S T C R C S C H W L P N G D P D E E R G V H A A V P V T G F . . . . . . 249 CTGGTGAACGGCATCTGCTGGACCGCCTACGCGCTCATCCGCTTCGACCTCTACATCACC L V N G I C W T A Y A L I R F D L Y I T W - T A S A G P P T R S S A S T S T S P G E R H L L D R L R A H P L R P L H H Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 308 GGTGATGTAGAGGTCGAAGCGGATGAGCGCGTAGGCGGTCCAGCAGATGCCGTTCACCAG G D V E V E A D E R V G G P A D A V H Q V M - R S K R M S A - A V Q Q M P F T R - C R G R S G - A R R R S S R C R S P . . . . . . 248 GGAAGCCAGTGACAGGAACAGCGGCATGTACTCCACGCTCTTCGTCTGGATCACCATTTT G S Q - Q E Q R H V L H A L R L D H H F E A S D R N S G M Y S T L F V W I T I G K P V T G T A A C T P R S S S G S P F Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:23 2003 ________________________________________________________________________________ Sequence 137: 17591258, from 1 to 543, both strands analyzed. ... started at: Mon Nov 10 17:49:23 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 12046896-) 1 TATATAAGTT ATCGTAGTAT ACTAGTATTA TATATTCCTG TTGCAACGCA TGGGCATTCA 61 GCTAGTTATT ACAAACATGT CTAAGGTGCT GTCCTGATTT TTTGCCCGAC AGCCCCACTA 121 CCGGGTAACT TTATTACAAG CATGTCGTGC TCGTGCCACG AGAGAGCAAT GAAGCGCAGC 181 CAGGGATATT GCTAACACCG TACACTCCCC TACGTACAGT ACAGATCATT CAAGCAGCGC 241 CTCAAAACAT AGTCCACTTA AGGCCCTGTT CGGTTGTTCC GGATTGGAGC CCTGGATTAA 301 TTCATAGTCG GATTACTTCT CTAATTAAAA AAAAAATTTG ATGAGCTGAA ATGAATCCTG 361 GCTCGTTCCG GTACAACCGA ACAGGCCCTA ATAGTCTGTG CACCCACTGA TTATTCACGA 421 ACAAAAACTT ACAGATCCAA CACTAGCACT AATACGATTC AGTGTGTAAC GCCGTAACAT 481 ATATATATAT TGGTAACGAG AACTCTGGCA Predicted gene structure (within gDNA segment 1 to 543): Exon 1 394 465 ( 72 n); cDNA 255 326 ( 72 n); score: 0.875 MATCH 17591258+ 12046896- 0.875 72 0.141 C PGS_17591258+_12046896- (394 465) Alignment (genomic DNA sequence = upper lines): CAGCTAAGGC CCTGTTCGAT TGTTCCGGAT TGAAGCCCCG GATTAATTCC TATCCAGATT 453 || |||||| |||||||| | |||||||||| || ||||| | ||||||||| || | |||| CACTTAAGGC CCTGTTCGGT TGTTCCGGAT TGGAGCCCTG GATTAATTCA TAGTCGGATT 314 ACTTCTCTAA TT 465 |||||||||| || ACTTCTCTAA TT 326 hqPGS_17591258+_12046896- (394 465) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 543: PGL 1 (+ strand): 394 465 AGS-1 (394 465) SCR (e 0.875) Exon 1 394 465 ( 72 n); score: 0.875 PGS (394 465) 12046896- 3-phase translation of AGS-1 (+strand): . . . . . . 394 CAGCTAAGGCCCTGTTCGATTGTTCCGGATTGAAGCCCCGGATTAATTCCTATCCAGATT Q L R P C S I V P D - S P G L I P I Q I S - G P V R L F R I E A P D - F L S R L A K A L F D C S G L K P R I N S Y P D . . 454 ACTTCTCTAATT T S L I L L - Y F S N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 465 AATTAGAGAAGTAATCTGGATAGGAATTAATCCGGGGCTTCAATCCGGAACAATCGAACA N - R S N L D R N - S G A S I R N N R T I R E V I W I G I N P G L Q S G T I E Q L E K - S G - E L I R G F N P E Q S N . . 405 GGGCCTTAGCTG G P - L G L S R A L A Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:23 2003 ________________________________________________________________________________ Sequence 138: 17593244, from 1 to 211, both strands analyzed. ... started at: Mon Nov 10 17:49:23 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:23 2003 ________________________________________________________________________________ Sequence 139: 17593885, from 1 to 236, both strands analyzed. ... started at: Mon Nov 10 17:49:23 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:24 2003 ________________________________________________________________________________ Sequence 140: 17595851, from 1 to 154, both strands analyzed. ... started at: Mon Nov 10 17:49:24 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:24 2003 ________________________________________________________________________________ Sequence 141: 17596533, from 1 to 53, both strands analyzed. ... started at: Mon Nov 10 17:49:24 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:24 2003 ________________________________________________________________________________ Sequence 142: 17602529, from 1 to 285, both strands analyzed. ... started at: Mon Nov 10 17:49:24 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:24 2003 ________________________________________________________________________________ Sequence 143: 18432575, from 1 to 191, both strands analyzed. ... started at: Mon Nov 10 17:49:24 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 5455788+) 1 TTTTTCAAAG AAAACAGCCC AATAAGAATT GAAGTTGGAT GAGGATCCTG CATTTGCAAT 61 TTACAGGCAC ACGAACATGG CGCCAACAAT GGGGGCAGAT TCTCTGACTA CAAATAACTG 121 TCCATACATG ACAACTGACA AGGGTCGGTA ACAAAAACCC AATCAAGGCA GCCAAAGCCA 181 AAACACCTGG GTGTGTGTCA CCACCACCAC GAGTCAAATG GCCTCGCTAT CCGAACCGCT 241 CGCACATGTT TCCTGGATGC ACAGACACAG TTCGTTAGCG AGTCTCTTCT AGAGATGGAC 301 GTGCAGCGTC CGCGGCGAAC ACGCTGCTAC GTCCAATCAC ATCTGACGCG CTCCTCGTAA 361 GCACAGCCGA CATGTCCCAG TTCCCGCTTC GCCGGTCCCA GCTCGAGTGC CGNACCCTCA 421 CGTCAGTACC CCCGACCGCA GGGATCTGGG ACTCCGAGCA CGCCACAGCA GGTCTGGCAC 481 TGGCCGGGCC TTCCACCTCG CTGCTGCGAC TGCGACGGCC TCCCGTTTTT GCATCGACGT 541 CCTCGTATTG CCCCGCTG Predicted gene structure (within gDNA segment 1 to 191): Exon 1 1 191 ( 191 n); cDNA 260 446 ( 187 n); score: 0.958 MATCH 18432575+ 5455788+ 0.958 191 1.000 G PGS_18432575+_5455788+ (1 191) Alignment (genomic DNA sequence = upper lines): CACAGACACA GTTCGCTAGC GAGTCTCTTC TAGAGATGGA CGTGCAGCGT CCGCGGCGAA 60 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| CACAGACACA GTTCGTTAGC GAGTCTCTTC TAGAGATGGA CGTGCAGCGT CCGCGGCGAA 319 CACGCTGCTA CGTCCAATCA CATCTGACGC GCTCCTCGGA AGCACAAGCC ACCGGCATGT 120 |||||||||| |||||||||| |||||||||| |||||||| | ||||| || ||| ||||| CACGCTGCTA CGTCCAATCA CATCTGACGC GCTCCTCGTA AGCAC-AG-- -CCGACATGT 375 CCCAGTTCCC GCTTCGCCGG TCCCAGCTCG AGTGCCGCAC CCTCACGTCA GTACCCCCGA 180 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| CCCAGTTCCC GCTTCGCCGG TCCCAGCTCG AGTGCCGNAC CCTCACGTCA GTACCCCCGA 435 CCGCAGGGAT C 191 |||||||||| | CCGCAGGGAT C 446 hqPGS_18432575+_5455788+ (1 191) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 191: PGL 1 (+ strand): 1 191 AGS-1 (1 191) SCR (e 0.958) Exon 1 1 191 ( 191 n); score: 0.958 PGS (1 191) 5455788+ 3-phase translation of AGS-1 (+strand): . . . . . . 1 CACAGACACAGTTCGCTAGCGAGTCTCTTCTAGAGATGGACGTGCAGCGTCCGCGGCGAA H R H S S L A S L F - R W T C S V R G E T D T V R - R V S S R D G R A A S A A N Q T Q F A S E S L L E M D V Q R P R R . . . . . . 61 CACGCTGCTACGTCCAATCACATCTGACGCGCTCCTCGGAAGCACAAGCCACCGGCATGT H A A T S N H I - R A P R K H K P P A C T L L R P I T S D A L L G S T S H R H V T R C Y V Q S H L T R S S E A Q A T G M . . . . . . 121 CCCAGTTCCCGCTTCGCCGGTCCCAGCTCGAGTGCCGCACCCTCACGTCAGTACCCCCGA P S S R F A G P S S S A A P S R Q Y P R P V P A S P V P A R V P H P H V S T P D S Q F P L R R S Q L E C R T L T S V P P . . 181 CCGCAGGGATC P Q G R R D T A G I Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 191 GATCCCTGCGGTCGGGGGTACTGACGTGAGGGTGCGGCACTCGAGCTGGGACCGGCGAAG D P C G R G Y - R E G A A L E L G P A K I P A V G G T D V R V R H S S W D R R S S L R S G V L T - G C G T R A G T G E . . . . . . 131 CGGGAACTGGGACATGCCGGTGGCTTGTGCTTCCGAGGAGCGCGTCAGATGTGATTGGAC R E L G H A G G L C F R G A R Q M - L D G N W D M P V A C A S E E R V R C D W T A G T G T C R W L V L P R S A S D V I G . . . . . . 71 GTAGCAGCGTGTTCGCCGCGGACGCTGCACGTCCATCTCTAGAAGAGACTCGCTAGCGAA V A A C S P R T L H V H L - K R L A S E - Q R V R R G R C T S I S R R D S L A N R S S V F A A D A A R P S L E E T R - R . . 11 CTGTGTCTGTG L C L C V C T V S V Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:25 2003 ________________________________________________________________________________ Sequence 144: 18432577, from 1 to 355, both strands analyzed. ... started at: Mon Nov 10 17:49:25 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 3 ******************************************************************************** EST sequence 1 -strand (File: 5455788-) 1 CAGCGGGGCA ATACGAGGAC GTCGATGCAA AAACGGGAGG CCGTCGCAGT CGCAGCAGCG 61 AGGTGGAAGG CCCGGCCAGT GCCAGACCTG CTGTGGCGTG CTCGGAGTCC CAGATCCCTG 121 CGGTCGGGGG TACTGACGTG AGGGTNCGGC ACTCGAGCTG GGACCGGCGA AGCGGGAACT 181 GGGACATGTC GGCTGTGCTT ACGAGGAGCG CGTCAGATGT GATTGGACGT AGCAGCGTGT 241 TCGCCGCGGA CGCTGCACGT CCATCTCTAG AAGAGACTCG CTAACGAACT GTGTCTGTGC 301 ATCCAGGAAA CATGTGCGAG CGGTTCGGAT AGCGAGGCCA TTTGACTCGT GGTGGTGGTG 361 ACACACACCC AGGTGTTTTG GCTTTGGCTG CCTTGATTGG GTTTTTGTTA CCGACCCTTG 421 TCAGTTGTCA TGTATGGACA GTTATTTGTA GTCAGAGAAT CTGCCCCCAT TGTTGGCGCC 481 ATGTTCGTGT GCCTGTAAAT TGCAAATGCA GGATCCTCAT CCAACTTCAA TTCTTATTGG 541 GCTGTTTTCT TTGAAAAA Predicted gene structure (within gDNA segment 1 to 355): Exon 1 2 235 ( 234 n); cDNA 283 515 ( 233 n); score: 0.979 MATCH 18432577+ 5455788- 0.979 234 0.659 G PGS_18432577+_5455788- (2 235) Alignment (genomic DNA sequence = upper lines): AATTATCTCG TGTCTGTGCA TCCAGGAAAC ATGTGCGAGC GGTTCGGATA GCGAGGCCAT 61 || | || | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGAACT-G TGTCTGTGCA TCCAGGAAAC ATGTGCGAGC GGTTCGGATA GCGAGGCCAT 341 TTGACTCGTG GTGGTGGTGA CACACACCCA GGTGTTTTGG CTTTGGCTGC CTTGATTGGG 121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACTCGTG GTGGTGGTGA CACACACCCA GGTGTTTTGG CTTTGGCTGC CTTGATTGGG 401 TTTTTGTTAC CGACCCTTGT CAGTTGTCAT GTATGGACAG TTATTTTTAG TCAGAGAATC 181 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| TTTTTGTTAC CGACCCTTGT CAGTTGTCAT GTATGGACAG TTATTTGTAG TCAGAGAATC 461 TGCCCCCATT GTTGGCGCCA TGTTCGTGTG CCTGTAAATT GCAAATGCAG GATC 235 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| TGCCCCCATT GTTGGCGCCA TGTTCGTGTG CCTGTAAATT GCAAATGCAG GATC 515 hqPGS_18432577+_5455788- (2 235) ******************************************************************************** EST sequence 2 -strand (File: 12971335-) 1 AGAAGAGACT CGCTAGCGAA CTGTGTCTGT GCATCCAGGA AACATGTGCG AGCGGTTCGG 61 ATAGCGAGGC CATTTAAACT CGTGGTGGTG GTGACACACC CCCAGGTGTT TTGGCTTTGG 121 CTGCCTTGAT TGGGTTTTTG TTACCGACCC TTGTCAGTTG TCATGTATGG ACAGTTATTT 181 GTAGTCAGAG AATCTGCCCC CATTGTTGGC GCCATGTTCG TGTGCCTGTA AATTGCAAAT 241 GCAGGATCCT CATC Predicted gene structure (within gDNA segment 1 to 355): Exon 1 11 235 ( 225 n); cDNA 23 248 ( 226 n); score: 0.978 MATCH 18432577+ 12971335- 0.978 225 0.886 C PGS_18432577+_12971335- (11 235) Alignment (genomic DNA sequence = upper lines): GTGTCTGTGC ATCCAGGAAA CATGTGCGAG CGGTTCGGAT AGCGAGGCCA TTT-GACTCG 69 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| GTGTCTGTGC ATCCAGGAAA CATGTGCGAG CGGTTCGGAT AGCGAGGCCA TTTAAACTCG 82 TGGTGGTGGT GACACACACC CAGGTGTTTT GGCTTTGGCT GCCTTGATTG GGTTTTTGTT 129 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| TGGTGGTGGT GACACACCCC CAGGTGTTTT GGCTTTGGCT GCCTTGATTG GGTTTTTGTT 142 ACCGACCCTT GTCAGTTGTC ATGTATGGAC AGTTATTTTT AGTCAGAGAA TCTGCCCCCA 189 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| ACCGACCCTT GTCAGTTGTC ATGTATGGAC AGTTATTTGT AGTCAGAGAA TCTGCCCCCA 202 TTGTTGGCGC CATGTTCGTG TGCCTGTAAA TTGCAAATGC AGGATC 235 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTGTTGGCGC CATGTTCGTG TGCCTGTAAA TTGCAAATGC AGGATC 248 hqPGS_18432577+_12971335- (11 235) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 355: PGL 1 (+ strand): 2 235 AGS-1 (2 235) SCR (e 0.979) Exon 1 2 235 ( 234 n); score: 0.979 PGS (2 235) 5455788- PGS (11 235) 12971335- 3-phase translation of AGS-1 (+strand): . . . . . . 2 AATTATCTCGTGTCTGTGCATCCAGGAAACATGTGCGAGCGGTTCGGATAGCGAGGCCAT N Y L V S V H P G N M C E R F G - R G H I I S C L C I Q E T C A S G S D S E A I L S R V C A S R K H V R A V R I A R P . . . . . . 62 TTGACTCGTGGTGGTGGTGACACACACCCAGGTGTTTTGGCTTTGGCTGCCTTGATTGGG L T R G G G D T H P G V L A L A A L I G - L V V V V T H T Q V F W L W L P - L G F D S W W W - H T P R C F G F G C L D W . . . . . . 122 TTTTTGTTACCGACCCTTGTCAGTTGTCATGTATGGACAGTTATTTTTAGTCAGAGAATC F L L P T L V S C H V W T V I F S Q R I F C Y R P L S V V M Y G Q L F L V R E S V F V T D P C Q L S C M D S Y F - S E N . . . . . . 182 TGCCCCCATTGTTGGCGCCATGTTCGTGTGCCTGTAAATTGCAAATGCAGGATC C P H C W R H V R V P V N C K C R I A P I V G A M F V C L - I A N A G L P P L L A P C S C A C K L Q M Q D Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 235 GATCCTGCATTTGCAATTTACAGGCACACGAACATGGCGCCAACAATGGGGGCAGATTCT D P A F A I Y R H T N M A P T M G A D S I L H L Q F T G T R T W R Q Q W G Q I L S C I C N L Q A H E H G A N N G G R F . . . . . . 175 CTGACTAAAAATAACTGTCCATACATGACAACTGACAAGGGTCGGTAACAAAAACCCAAT L T K N N C P Y M T T D K G R - Q K P N - L K I T V H T - Q L T R V G N K N P I S D - K - L S I H D N - Q G S V T K T Q . . . . . . 115 CAAGGCAGCCAAAGCCAAAACACCTGGGTGTGTGTCACCACCACCACGAGTCAAATGGCC Q G S Q S Q N T W V C V T T T T S Q M A K A A K A K T P G C V S P P P R V K W P S R Q P K P K H L G V C H H H H E S N G . . . . . . 55 TCGCTATCCGAACCGCTCGCACATGTTTCCTGGATGCACAGACACGAGATAATT S L S E P L A H V S W M H R H E I I R Y P N R S H M F P G C T D T R - L A I R T A R T C F L D A Q T R D N Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:25 2003 ________________________________________________________________________________ Sequence 145: 18435543, from 1 to 274, both strands analyzed. ... started at: Mon Nov 10 17:49:25 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:26 2003 ________________________________________________________________________________ Sequence 146: 18436289, from 1 to 51, both strands analyzed. ... started at: Mon Nov 10 17:49:26 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:26 2003 ________________________________________________________________________________ Sequence 147: 18438087, from 1 to 48, both strands analyzed. ... started at: Mon Nov 10 17:49:26 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:26 2003 ________________________________________________________________________________ Sequence 148: 18438808, from 1 to 293, both strands analyzed. ... started at: Mon Nov 10 17:49:26 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 15426705+) 1 TCCTCCTCCT AGCGCGAGCG AGCGAGCTAG CTCACCTACT CTGTGGCTGG ACCTCGCGCG 61 CGCGCGCGCG GGATGGCGCC GCGTCCTCGC CCTCGCCTTC GGCGGCCGGC TCCCACGCGG 121 GCCTCGCCAT CGCGGCCACC GCCATGGCGC TCTCCGGCAC GCTCGTCCTC TACTCCCTGT 181 GCCGCGCGAA GCAGCAGCGA CTGGTGCTCC CCTCCTCCTC CGACGACGCC CCGTCCCCTC 241 GCCCTCGGCT CCGCCCGTGC CTCTCTTCGT CCGAGAAGCG GAAGAAGAAG AAGCGGGAGA 301 TGGCGCGGCG CGGCAGCCAG AAGCGGGTGC GCTTCGCGGA CGACGTCGTA GGCAGG Predicted gene structure (within gDNA segment 1 to 293): Exon 1 149 293 ( 145 n); cDNA 1 146 ( 146 n); score: 0.903 MATCH 18438808+ 15426705+ 0.903 145 0.495 G PGS_18438808+_15426705+ (149 293) Alignment (genomic DNA sequence = upper lines): TCCTCCTCCT AGCGCGAGCG AGCGAGCTAG CTCACCTACT CTGTGGCTGG ACCTCGCGCG 208 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCCTCCT AGCGCGAGCG AGCGAGCTAG CTCACCTACT CTGTGGCTGG ACCTCGCGCG 60 CGGGATGGCG CCGTCG-TCC TCGCCCTCGC CCTCGCCCTC GGCGGCCGGC TCCCACGCGG 267 || | ||| | | || || |||||| ||||||| || |||||||||| |||||||||| CGCGCGCGCG GGATGGCGCC GCGTCCTCGC CCTCGCCTTC GGCGGCCGGC TCCCACGCGG 120 GCCTCGCCAT CGCGGCCACC GCCATG 293 |||||||||| |||||||||| |||||| GCCTCGCCAT CGCGGCCACC GCCATG 146 hqPGS_18438808+_15426705+ (149 293) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 293: PGL 1 (+ strand): 149 293 AGS-1 (149 293) SCR (e 0.903) Exon 1 149 293 ( 145 n); score: 0.903 PGS (149 293) 15426705+ 3-phase translation of AGS-1 (+strand): . . . . . . 149 TCCTCCTCCTAGCGCGAGCGAGCGAGCTAGCTCACCTACTCTGTGGCTGGACCTCGCGCG S S S - R E R A S - L T Y S V A G P R A P P P S A S E R A S S P T L W L D L A R L L L A R A S E L A H L L C G W T S R . . . . . . 209 CGGGATGGCGCCGTCGTCCTCGCCCTCGCCCTCGCCCTCGGCGGCCGGCTCCCACGCGGG R D G A V V L A L A L A L G G R L P R G G M A P S S S P S P S P S A A G S H A G A G W R R R P R P R P R P R R P A P T R . . . 269 CCTCGCCATCGCGGCCACCGCCATG P R H R G H R H L A I A A T A M A S P S R P P P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 293 CATGGCGGTGGCCGCGATGGCGAGGCCCGCGTGGGAGCCGGCCGCCGAGGGCGAGGGCGA H G G G R D G E A R V G A G R R G R G R M A V A A M A R P A W E P A A E G E G E W R W P R W R G P R G S R P P R A R A . . . . . . 233 GGGCGAGGACGACGGCGCCATCCCGCGCGCGAGGTCCAGCCACAGAGTAGGTGAGCTAGC G R G R R R H P A R E V Q P Q S R - A S G E D D G A I P R A R S S H R V G E L A R A R T T A P S R A R G P A T E - V S - . . . 173 TCGCTCGCTCGCGCTAGGAGGAGGA S L A R A R R R R S L A L G G G L A R S R - E E Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:26 2003 ________________________________________________________________________________ Sequence 149: 18438874, from 1 to 537, both strands analyzed. ... started at: Mon Nov 10 17:49:26 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 1 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 440708+) 1 CTACATAACA CTTTAAATCT ATTGTTTATA GAGCCTCAAG AAATAAAGTA GTTTAAAATT 61 TACTGGCTAC ATTTTAGACC ATATAAGGAA CACCGCGTAC GCCGGGTGTA TTTATTTGTA 121 TACGAACATA GTAATTAAGT GCAGCAGCAG ATCATGATGT GTCGTTGCAT TGATCAGGCC 181 TCGTCGTCGT CGTTGTCAGC ACTGGCAGCA GTAGCGGCAN GGCAGTAGTT TGATTCTTAA 241 CGAGCGCAAC GNTCCTCGCT GCTTCGGTCT TATCCTTGAT GCCAAGCTTC TGCAATGTNG 301 GGGATCACAA GCGGTGGGGT TGGTCAAGCC CACTCGAAAG GCCGCCTTGG AGATCCTGTC 361 CCACTTTTG Predicted gene structure (within gDNA segment 1 to 537): Exon 1 274 338 ( 65 n); cDNA 81 142 ( 62 n); score: 0.785 Intron 1 339 375 ( 37 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0.57) Exon 2 376 537 ( 162 n); cDNA 143 306 ( 164 n); score: 0.679 MATCH 18438874+ 440708+ 0.709 227 0.615 C PGS_18438874+_440708+ (274 338,376 537) Alignment (genomic DNA sequence = upper lines): ATACGAGGAA CACCACGTAC GCCGGGTGTA TTTATTTGCA CAGTAACATA CTCCTATATA 333 ||| ||||| |||| ||||| |||||||||| |||||||| | | |||||| | | || | ATATAAGGAA CACCGCGTAC GCCGGGTGTA TTTATTTGTA TACGAACATA GTAAT-TA-A 138 CTAGCACTAG GAGTATACTG CTACTGTACC ACGTGGAAGC AGAGCAACAA AACAAGTCTT 393 | || |||| || | || | | GT-GC..... .......... .......... .......... ..AGCAGCAG ATCATGATGT 160 GATGTGTGGA TGGATCA-TC AGAGACCTCC TCGTTGTTCT CATATGTAGT AGTAGCAGCA 452 | || || | | ||||| | | | || ||||||| || | || |||||| ||| GTCGT-TGCA TTGATCAGGC CTCGTCGTCG TCGTTGTCAG CACTGGCAGC AGTAGCGGCA 219 --GTACTAGT TTTGGTCCTT AACGAGCGCA ACGATCTGCG CTGCTGCGTT TTTATCTTTG 510 | | ||| |||| | ||| |||||||||| ||| || || ||||| || | ||||| ||| NGGCAGTAG- TTTGATTCTT AACGAGCGCA ACGNTCCTCG CTGCTTCGGT CTTATCCTTG 278 ATGCCAAGAT CCTTC-ATGT CGGGGATC 537 |||||||| | || | |||| ||||||| ATGCCAAGCT TCTGCAATGT NGGGGATC 306 hqPGS_18438874+_440708+ (274 338) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 537: PGL 1 (+ strand): 274 338 AGS-1 (274 338) SCR (e 0.785) Exon 1 274 338 ( 65 n); score: 0.785 PGS (274 338) 440708+ 3-phase translation of AGS-1 (+strand): . . . . . . 274 ATACGAGGAACACCACGTACGCCGGGTGTATTTATTTGCACAGTAACATACTCCTATATA I R G T P R T P G V F I C T V T Y S Y I Y E E H H V R R V Y L F A Q - H T P I Y T R N T T Y A G C I Y L H S N I L L Y . 334 CTAGC L - T S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 338 GCTAGTATATAGGAGTATGTTACTGTGCAAATAAATACACCCGGCGTACGTGGTGTTCCT A S I - E Y V T V Q I N T P G V R G V P L V Y R S M L L C K - I H P A Y V V F L - Y I G V C Y C A N K Y T R R T W C S . 278 CGTAT R V S Y Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:27 2003 ________________________________________________________________________________ Sequence 150: 18440411, from 1 to 209, both strands analyzed. ... started at: Mon Nov 10 17:49:27 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:27 2003 ________________________________________________________________________________ Sequence 151: 18441698, from 1 to 112, both strands analyzed. ... started at: Mon Nov 10 17:49:27 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:27 2003 ________________________________________________________________________________ Sequence 152: 18442205, from 1 to 249, both strands analyzed. ... started at: Mon Nov 10 17:49:27 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:28 2003 ________________________________________________________________________________ Sequence 153: 18442235, from 1 to 502, both strands analyzed. ... started at: Mon Nov 10 17:49:28 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 6952414+) 1 ATCCGAATTC GCGGCCGCGT CGACCGCCGC AGGAGTACGG TCGGCACGTT CCAGGGCCCT 61 CGACATCCTC CCGTCGGGTT CCCGCAGCCT GCCCCGCCTC CCGGGCTCGT CGTCGTCGGC 121 GGCGGCGGCT ATCACAACCA GCAGCAGCCG TACGCGCCTG CGGAGACGTA CTACGCCCAG 181 GGGTACCAGG CCGTACCAGG CTATGGTCCT GTTGCTGAAG GAAGACCTGT GAGAATGAGG 241 CGTCTCCCAT GTTGTGGCCT CGGCTTAGGC TGGTGTCTGT TCATAACTGG GTTTTTCTTG 301 GCTGCCATTC CATGGTTCAT TGGAGCTTTC GTTCTTATAT GTGTGCGGGT ACATGACCAA 361 CGAGAGAAAC CAGGATACGT TGCTTGCACA ATTGCTGCCG TTGTTGCTGC CGTTGCCATC 421 CTCCTGGGGG TAACTAAAGG AACGCACGTG TGGTGAATTG CCTCCAGAGA AGGCAATCGA 481 TGTGTATTTG CGTTGTATAT CTGTGTGTGC TAAAAAGTGT GGAGTAACAT CCATGTGAAT 541 GTGATCTTAT GTCCATATAT ATTCTACTTT GCAATGAAAT TTGAAATGTA GTAATG Predicted gene structure (within gDNA segment 1 to 502): Exon 1 137 305 ( 169 n); cDNA 24 199 ( 176 n); score: 0.882 MATCH 18442235+ 6952414+ 0.882 169 0.337 G PGS_18442235+_6952414+ (137 305) Alignment (genomic DNA sequence = upper lines): CCGCCGCAGG AGTACGGGTA CGGCACGTTC CAGGGCCCTC GACATCCTCC CGTCGGGTTC 196 |||||||||| ||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCCGCAGG AGTAC-GGT- CGGCACGTTC CAGGGCCCTC GACATCCTCC CGTCGGGTTC 81 CCGCAGCCTG CCCCGCCTCC CGGGCTCG-- G-CG--G-CG GCGGC---TA TCACAACCAG 247 |||||||||| |||||||||| |||||||| | || | || ||||| || |||||||||| CCGCAGCCTG CCCCGCCTCC CGGGCTCGTC GTCGTCGGCG GCGGCGGCTA TCACAACCAG 141 CAGCAGCCGT ACGCGCCTGC GGAGACGTAC TACGCCCAGG GGTACCAGGC CGTACCAG 305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CAGCAGCCGT ACGCGCCTGC GGAGACGTAC TACGCCCAGG GGTACCAGGC CGTACCAG 199 hqPGS_18442235+_6952414+ (137 305) ******************************************************************************** EST sequence 2 -strand (File: 5761881-) 1 AGCCTGCCCC GCCTCCCGGG CTCGGCAGCG GCGGCTATCA CAACCAGCAG CAGCCGTACG 61 CGCCTGCGGA GACGTACTAC GCCCAGGGGT ACCAGGCCGT ACCAGGCTAT GGTCCTGTTG 121 CTGAAGGAAG ACCTGTGAGA ATGAGGCGTC TCCCATGTTG TGGCCTCGGC TTAGGCTGGT 181 GTCTGTTCAT AACTGGGTTT TTCTTGGCTG CCATTCCATG GTTCATTGGA GCTTTCGTTC 241 TTATATGTGT GCGGGTACAT GACCAACGAG AGAAACCAGG ATACGTTGCT TGCACAATTG 301 CTGCCGTTGT TGCTGCCGTT GCCATCCTCT TGGGGGTAAC TAAAAAAAAG CACGTGTGGT 361 GAATTGCCTC CAGAGAAGGC AATCAATGTG TATTTGCGTT GTATATCTGT GTGTGCTAAA 421 AAGTGTGGAG CAACATCCAT GTGATCTTAT GTCCATATAT ATTCTACTTT GCAATGAAGT 481 TTGAAATGT Predicted gene structure (within gDNA segment 1 to 502): Exon 1 201 305 ( 105 n); cDNA 1 105 ( 105 n); score: 0.990 MATCH 18442235+ 5761881- 0.990 105 0.215 C PGS_18442235+_5761881- (201 305) Alignment (genomic DNA sequence = upper lines): AGCCTGCCCC GCCTCCCGGG CTCGGCGGCG GCGGCTATCA CAACCAGCAG CAGCCGTACG 260 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| AGCCTGCCCC GCCTCCCGGG CTCGGCAGCG GCGGCTATCA CAACCAGCAG CAGCCGTACG 60 CGCCTGCGGA GACGTACTAC GCCCAGGGGT ACCAGGCCGT ACCAG 305 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CGCCTGCGGA GACGTACTAC GCCCAGGGGT ACCAGGCCGT ACCAG 105 hqPGS_18442235+_5761881- (201 305) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 502: PGL 1 (+ strand): 137 305 AGS-1 (137 305) SCR (e 0.882) Exon 1 137 305 ( 169 n); score: 0.882 PGS (137 305) 6952414+ PGS (201 305) 5761881- 3-phase translation of AGS-1 (+strand): . . . . . . 137 CCGCCGCAGGAGTACGGGTACGGCACGTTCCAGGGCCCTCGACATCCTCCCGTCGGGTTC P P Q E Y G Y G T F Q G P R H P P V G F R R R S T G T A R S R A L D I L P S G S A A G V R V R H V P G P S T S S R R V . . . . . . 197 CCGCAGCCTGCCCCGCCTCCCGGGCTCGGCGGCGGCGGCTATCACAACCAGCAGCAGCCG P Q P A P P P G L G G G G Y H N Q Q Q P R S L P R L P G S A A A A I T T S S S R P A A C P A S R A R R R R L S Q P A A A . . . . . 257 TACGCGCCTGCGGAGACGTACTACGCCCAGGGGTACCAGGCCGTACCAG Y A P A E T Y Y A Q G Y Q A V P T R L R R R T T P R G T R P Y Q V R A C G D V L R P G V P G R T Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 305 CTGGTACGGCCTGGTACCCCTGGGCGTAGTACGTCTCCGCAGGCGCGTACGGCTGCTGCT L V R P G T P G R S T S P Q A R T A A A W Y G L V P L G V V R L R R R V R L L L G T A W Y P W A - Y V S A G A Y G C C . . . . . . 245 GGTTGTGATAGCCGCCGCCGCCGAGCCCGGGAGGCGGGGCAGGCTGCGGGAACCCGACGG G C D S R R R R A R E A G Q A A G T R R V V I A A A A E P G R R G R L R E P D G W L - - P P P P S P G G G A G C G N P T . . . . . 185 GAGGATGTCGAGGGCCCTGGAACGTGCCGTACCCGTACTCCTGCGGCGG E D V E G P G T C R T R T P A A R M S R A L E R A V P V L L R R G G C R G P W N V P Y P Y S C G Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:28 2003 ________________________________________________________________________________ Sequence 154: 18444278, from 1 to 580, both strands analyzed. ... started at: Mon Nov 10 17:49:28 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 Total number of EST alignments reported: 0 ________________________________________________________________________________ Predicted gene locations (0) in segment 1 to 580: ... finished at: Mon Nov 10 17:49:29 2003 ________________________________________________________________________________ Sequence 155: 18444530, from 1 to 547, both strands analyzed. ... started at: Mon Nov 10 17:49:29 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:29 2003 ________________________________________________________________________________ Sequence 156: 18657140, from 1 to 590, both strands analyzed. ... started at: Mon Nov 10 17:49:29 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 1 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 485681-) 1 CGCCGCGATC AATGTCAGCC CTGAGGTCNC TGAATCTACA AGGATCATCT ATGAAGGTTC 61 AGTAACTGCT GCGAACTGCA AAGAGCTGGC AGCACAGCCT GATGTCGATG GTTTCCTTGT 121 GGGCGGTGCT TCTTTGAAGC CCGAGTTCAN CGACATCATC AACGCCGCCG CCGTGTGAAG 181 TCCGCTNAAG ATGTTCCAAC CCTTCACCCT GTTACGGTGA TGTGCTGAAG ACAGATCAGA 241 CTANTTTTTT GTTTAANCGT GCAGTGCTAT GTAAGCTACT AACTTTGCGC TGGTGCGGAT 301 GCTGATTTCC CTCCCCCTAG CTTTTTGTGA GGCTACTCTA CAGCTTGATT CAGCTTGCTA 361 ATNATGTTTG CCTCAAAA Predicted gene structure (within gDNA segment 1 to 590): Exon 1 2 48 ( 47 n); cDNA 10 56 ( 47 n); score: 0.872 Intron 1 49 140 ( 92 n); Pd: 1.000 (s: 0.87), Pa: 0.999 (s: 0.94) Exon 2 141 223 ( 83 n); cDNA 57 139 ( 83 n); score: 0.916 Intron 2 224 347 ( 124 n); Pd: 1.000 (s: 0.92), Pa: 0.999 (s: 0.81) Exon 3 348 399 ( 52 n); cDNA 140 193 ( 54 n); score: 0.827 MATCH 18657140+ 485681- 0.881 182 0.481 C PGS_18657140+_485681- (2 48,141 223,348 399) Alignment (genomic DNA sequence = upper lines): CAATGCCAGC CCTGAGGTTG CTGAATCTAC TAGGATCATC TACGGAGGTA CATACATTTT 61 ||||| |||| |||||||| |||||||||| ||||||||| || | || CAATGTCAGC CCTGAGGTCN CTGAATCTAC AAGGATCATC TATGAAG... .......... 56 GTTGGAGCCA TCGACTTGGC GTTTTATGTG CTAGCTGCTA AATCATCTTT GGTAATCACA 121 .......... .......... .......... .......... .......... .......... 56 CACGTGCCTC CTGCTACAGG CTCTGTAACT GCTGCGAACT GCAAAGAGCT AGCAGCACAG 181 | || |||||| |||||||||| |||||||||| ||||||||| .......... .........G TTCAGTAACT GCTGCGAACT GCAAAGAGCT GGCAGCACAG 97 CCTGATGTCG ATGGTTTTCT TGTCGGTGGA GCTTCTTTGA AGGTAATGAA AAATCCAGAA 241 |||||||||| ||||||| || ||| || || |||||||||| || CCTGATGTCG ATGGTTTCCT TGTGGGCGGT GCTTCTTTGA AG........ .......... 139 AGACGGTTGA TGTCCTGTTT CTTTTTCCTT TTATTTTTAT AAACCAAAGA AACAACGAAC 301 .......... .......... .......... .......... .......... .......... 139 TGGCTGCCCG TGTTGCTGAC TGTTTCCAAC CCTATCTCGT CTGCAGCCTG AGTTCATCGA 361 || | |||||| ||| .......... .......... .......... .......... ......CCCG AGTTCANCGA 153 CATCATCAAC GCGGCCACC- -GTGAAGTCC GCTTAAGATG 399 |||||||||| || ||| || ||||||||| ||| |||||| CATCATCAAC GCCGCCGCCG TGTGAAGTCC GCTNAAGATG 193 hqPGS_18657140+_485681- (2 48,141 223,348 399) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 590: PGL 1 (+ strand): 2 399 AGS-1 (2 48,141 223,348 399) SCR (e 0.872 d 1.000 a 0.999,e 0.916 d 1.000 a 0.999,e 0.827) Exon 1 2 48 ( 47 n); score: 0.872 Intron 1 49 140 ( 92 n); Pd: 1.000 Pa: 0.999 Exon 2 141 223 ( 83 n); score: 0.916 Intron 2 224 347 ( 124 n); Pd: 1.000 Pa: 0.999 Exon 3 348 399 ( 52 n); score: 0.827 PGS (2 48,141 223,348 399) 485681- 3-phase translation of AGS-1 (+strand): . . . . . : . 2 CAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG : GCTCTGTAACTGC Q C Q P - G C - I Y - D H L R R : L C N C N A S P E V A E S T R I I Y G : G S V T A M P A L R L L N L L G S S T E : A L - L . . . . . . 154 TGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGC C E L Q R A S S T A - C R W F S C R W S A N C K E L A A Q P D V D G F L V G G A L R T A K S - Q H S L M S M V F L S V E . : . . . . . 214 TTCTTTGAAG : CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGA F F E : A - V H R H H Q R G H R E V R L R S L K : P E F I D I I N A A T V K S A - D L L - S : L S S S T S S T R P P - S P L K . 398 TG M Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:30 2003 ________________________________________________________________________________ Sequence 157: 18658275, from 1 to 582, both strands analyzed. ... started at: Mon Nov 10 17:49:30 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:30 2003 ________________________________________________________________________________ Sequence 158: 18660631, from 1 to 458, both strands analyzed. ... started at: Mon Nov 10 17:49:30 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:30 2003 ________________________________________________________________________________ Sequence 159: 18666397, from 1 to 389, both strands analyzed. ... started at: Mon Nov 10 17:49:30 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:30 2003 ________________________________________________________________________________ Sequence 160: 18670990, from 1 to 574, both strands analyzed. ... started at: Mon Nov 10 17:49:30 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 1 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 14203396-) 1 GCAACCAAGC AACCTCACTC GCTACAAACA AGAAACAACA AGCGAAAGTT TTCTCTCGAG 61 AGAGGAGGAG AAGACCAACA CCGGGAGGAG ATGGCAGCAG CAGCAGCGAC GAAGGCGTCG 121 TCGTGGATGG TGGCCATGAG CGTGGGCGCC GTGGAAGCGC TCAAGGACCA GGGAGGCCTC 181 TGCCGCTGGA ANTANGCGCT GCGGTCGCGT CTACCGGACC GCCAAGGCGC AACGTGCGCA 241 GCGGCAGCAG AANTTCGCGC GCAGCGGGAC AAGGACCTGG CCCCGGCGGC GGAGAAGGGG 301 CGGCAGGACA AGGCCGCCGC GGAGGAGGGC TTGAGGACCG TCATGTACCT CAGCTGCTGG 361 GGACCCAATT AACTAGCCTT TCGTATCTTA GCTGGTCTTT GGCCTTCTTC AGCGACCGCG 421 AGCTCGCGAG CTGATTATTG TAAATATACG ACGATGATCG GATGATGATG ATGATGAAAA 481 GTTCTGCCAC TTCCGTTCGG GCGTTTTGGA CTGTGTACGA TCGACTGACT TCTGATCCTG 541 TACAATGTAC TGGCGTGAAA TCTGAGAGCT TTGAGTCCAC GATTCCAAAT TCCAAGTAGA 601 CAGGAGGGAG GGTTCATCGC ATACCGGCGT TGCATTCCCT GTCCTTTTAG ATGAAGTTTA 661 TG Predicted gene structure (within gDNA segment 11 to 574): Exon 1 321 574 ( 254 n); cDNA 2 257 ( 256 n); score: 0.953 MATCH 18670990+ 14203396- 0.953 254 0.450 G PGS_18670990+_14203396- (321 574) Alignment (genomic DNA sequence = upper lines): CAACCAAGCA ACCTCACTCG CTACAAACAA GAAACAACAA GCGAAAGTTT TCTCTCGAGA 380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCAAGCA ACCTCACTCG CTACAAACAA GAAACAACAA GCGAAAGTTT TCTCTCGAGA 61 GAGGAGGAGA AGACCAACAC CGGGAGGAGA TGGCAGCAGC AGCAGCGACG AAGGCGTCGT 440 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAGGAGA AGACCAACAC CGGGAGGAGA TGGCAGCAGC AGCAGCGACG AAGGCGTCGT 121 CGTGGATGGT GGCCATGAGC GTGGGCGCCG TGGAAGCGCT CAAGGACCAG GGAGGCCTCT 500 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGATGGT GGCCATGAGC GTGGGCGCCG TGGAAGCGCT CAAGGACCAG GGAGGCCTCT 181 GCCGCTGGAA CTACGCGCTG CGGTC-CGTC TACCGGACCT GC-AGGC-CA ACGTGCGCAG 557 |||||||||| || |||||| ||||| |||| ||||||||| | |||| || |||||||||| GCCGCTGGAA NTANGCGCTG CGGTCGCGTC TACCGGACCG CCAAGGCGCA ACGTGCGCAG 241 CGGCAGCAGA AGCTTCG 574 |||||||||| | |||| CGGCAGCAGA A-NTTCG 257 hqPGS_18670990+_14203396- (321 574) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 574: PGL 1 (+ strand): 321 574 AGS-1 (321 574) SCR (e 0.953) Exon 1 321 574 ( 254 n); score: 0.953 PGS (321 574) 14203396- 3-phase translation of AGS-1 (+strand): . . . . . . 321 CAACCAAGCAACCTCACTCGCTACAAACAAGAAACAACAAGCGAAAGTTTTCTCTCGAGA Q P S N L T R Y K Q E T T S E S F L S R N Q A T S L A T N K K Q Q A K V F S R E T K Q P H S L Q T R N N K R K F S L E . . . . . . 381 GAGGAGGAGAAGACCAACACCGGGAGGAGATGGCAGCAGCAGCAGCGACGAAGGCGTCGT E E E K T N T G R R W Q Q Q Q R R R R R R R R R P T P G G D G S S S S D E G V V R G G E D Q H R E E M A A A A A T K A S . . . . . . 441 CGTGGATGGTGGCCATGAGCGTGGGCGCCGTGGAAGCGCTCAAGGACCAGGGAGGCCTCT R G W W P - A W A P W K R S R T R E A S V D G G H E R G R R G S A Q G P G R P L S W M V A M S V G A V E A L K D Q G G L . . . . . . 501 GCCGCTGGAACTACGCGCTGCGGTCCGTCTACCGGACCTGCAGGCCAACGTGCGCAGCGG A A G T T R C G P S T G P A G Q R A Q R P L E L R A A V R L P D L Q A N V R S G C R W N Y A L R S V Y R T C R P T C A A . . 561 CAGCAGAAGCTTCG Q Q K L S R S F A A E A S Maximal non-overlapping open reading frames (>= 64 codons): >18670990+_PGL-1_AGS-1_PPS_2 (322 573) (frame '2'; 252 bp, 84 residues) 1 NQATSLATNK KQQAKVFSRE RRRRPTPGGD GSSSSDEGVV VDGGHERGRR GSAQGPGRPL 61 PLELRAAVRL PDLQANVRSG SRSF >18670990+_PGL-1_AGS-1_PPS_1 (323 574) (frame '0'; 252 bp, 84 residues) 1 TKQPHSLQTR NNKRKFSLER GGEDQHREEM AAAAATKASS WMVAMSVGAV EALKDQGGLC 61 RWNYALRSVY RTCRPTCAAA AEAS 3-phase translation of AGS-1 (-strand): . . . . . . 574 CGAAGCTTCTGCTGCCGCTGCGCACGTTGGCCTGCAGGTCCGGTAGACGGACCGCAGCGC R S F C C R C A R W P A G P V D G P Q R E A S A A A A H V G L Q V R - T D R S A K L L L P L R T L A C R S G R R T A A . . . . . . 514 GTAGTTCCAGCGGCAGAGGCCTCCCTGGTCCTTGAGCGCTTCCACGGCGCCCACGCTCAT V V P A A E A S L V L E R F H G A H A H - F Q R Q R P P W S L S A S T A P T L M R S S S G R G L P G P - A L P R R P R S . . . . . . 454 GGCCACCATCCACGACGACGCCTTCGTCGCTGCTGCTGCTGCCATCTCCTCCCGGTGTTG G H H P R R R L R R C C C C H L L P V L A T I H D D A F V A A A A A I S S R C W W P P S T T T P S S L L L L P S P P G V . . . . . . 394 GTCTTCTCCTCCTCTCTCGAGAGAAAACTTTCGCTTGTTGTTTCTTGTTTGTAGCGAGTG V F S S S L E R K L S L V V S C L - R V S S P P L S R E N F R L L F L V C S E - G L L L L S R E K T F A C C F L F V A S . . 334 AGGTTGCTTGGTTG R L L G G C L V E V A W L Maximal non-overlapping open reading frames (>= 64 codons): >18670990-_PGL-1_AGS-1_PPS_1 (574 341) (frame '1'; 231 bp, 77 residues) 1 RSFCCRCARW PAGPVDGPQR VVPAAEASLV LERFHGAHAH GHHPRRRLRR CCCCHLLPVL 61 VFSSSLERKL SLVVSCL- ... finished at: Mon Nov 10 17:49:31 2003 ________________________________________________________________________________ Sequence 161: 18671555, from 1 to 267, both strands analyzed. ... started at: Mon Nov 10 17:49:31 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 440773+) 1 NAGAGGAGGG CCCTTCTGCT TGTTTCTCCG CTTTGCAAGA TGTCGTCCCC GAGCAAGCGC 61 CGCGAGATGG ACCTTATGAA GCTGATGATG AGCGACTACA AGGTGGAGAT GGTGAACGAC 121 GGGATGCAGG AATTCTTCGT CGAATTCAAG GGCCCGGCCG AAAGTATCTA CCAAGGTGGT 181 GTCTGGAAGG TTCGGGTAGA ACTGCCTGAT GCATACCCTT ACAAATCCCC GTCCATCGGC 241 TTCATCAACA AGATTTATCA CCCGAATGTC GATGAGATGT CTGGCTCTGT CTGTTTGGAT 301 GTCATAAACC AGACATGGAG CCCAATGTTT GATCTAGTAA ATGTTTTTGA AGTATTCCTT 361 CCACAGCTGT TGCTGTACCC AAATCCTTCT GATCCATTAA ATGGGGAG Predicted gene structure (within gDNA segment 1 to 267): Exon 1 132 213 ( 82 n); cDNA 2 83 ( 82 n); score: 1.000 MATCH 18671555+ 440773+ 1.000 82 0.307 G PGS_18671555+_440773+ (132 213) Alignment (genomic DNA sequence = upper lines): AGAGGAGGGC CCTTCTGCTT GTTTCTCCGC TTTGCAAGAT GTCGTCCCCG AGCAAGCGCC 191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGAGGGC CCTTCTGCTT GTTTCTCCGC TTTGCAAGAT GTCGTCCCCG AGCAAGCGCC 61 GCGAGATGGA CCTTATGAAG CT 213 |||||||||| |||||||||| || GCGAGATGGA CCTTATGAAG CT 83 hqPGS_18671555+_440773+ (132 213) ******************************************************************************** EST sequence 2 +strand (File: 453315+) 1 AGAGGAGGGC CCTTCTGCTT GTTTCTCCGC TTTGCAAGAT GTCGTCCCCG AGCAAGCGCC 61 GCGAGATGGA CCTTATGAAG CTGATGATGA GCGACTACAA GGTGGAGATG GTGAACGACG 121 GGATGCAGGA ATTCTTCGTC GAATTCAAGG GCCCGGCCGA AAGTATCTAC CAAGGTGGTG 181 TCTGGAAGGT TCGGGTAGAA CTGCCTGATG CATACCCTTA CAAATCCCCG TCCATCGGCT 241 TCATCAACAA GATTTATCAC CCGAATGTCG ATGAGATGTC TGGCTCTGTC TGTTTGGATG 301 TCATAAACCA GACATGGAGC CCAATGTTTG ATCTAGTAAA TGTTTTTGAA GTATTCCTTC 361 CACAGCTGTT GCTGTACCCA AATCCTTCTG ATCCATTAAA TGGGGAGGCT GCAGACT Predicted gene structure (within gDNA segment 1 to 267): Exon 1 132 213 ( 82 n); cDNA 1 82 ( 82 n); score: 1.000 MATCH 18671555+ 453315+ 1.000 82 0.307 G PGS_18671555+_453315+ (132 213) Alignment (genomic DNA sequence = upper lines): AGAGGAGGGC CCTTCTGCTT GTTTCTCCGC TTTGCAAGAT GTCGTCCCCG AGCAAGCGCC 191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGAGGGC CCTTCTGCTT GTTTCTCCGC TTTGCAAGAT GTCGTCCCCG AGCAAGCGCC 60 GCGAGATGGA CCTTATGAAG CT 213 |||||||||| |||||||||| || GCGAGATGGA CCTTATGAAG CT 82 hqPGS_18671555+_453315+ (132 213) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 267: PGL 1 (+ strand): 132 213 AGS-1 (132 213) SCR (e 1.000) Exon 1 132 213 ( 82 n); score: 1.000 PGS (132 213) 440773+ PGS (132 213) 453315+ 3-phase translation of AGS-1 (+strand): . . . . . . 132 AGAGGAGGGCCCTTCTGCTTGTTTCTCCGCTTTGCAAGATGTCGTCCCCGAGCAAGCGCC R G G P F C L F L R F A R C R P R A S A E E G P S A C F S A L Q D V V P E Q A P R R A L L L V S P L C K M S S P S K R . . . 192 GCGAGATGGACCTTATGAAGCT A R W T L - S R D G P Y E A R E M D L M K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 213 AGCTTCATAAGGTCCATCTCGCGGCGCTTGCTCGGGGACGACATCTTGCAAAGCGGAGAA S F I R S I S R R L L G D D I L Q S G E A S - G P S R G A C S G T T S C K A E K L H K V H L A A L A R G R H L A K R R . . . 153 ACAAGCAGAAGGGCCCTCCTCT T S R R A L L Q A E G P S S N K Q K G P P Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:31 2003 ________________________________________________________________________________ Sequence 162: 20304460, from 1 to 400, both strands analyzed. ... started at: Mon Nov 10 17:49:31 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:31 2003 ________________________________________________________________________________ Sequence 163: 20305044, from 1 to 370, both strands analyzed. ... started at: Mon Nov 10 17:49:31 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:31 2003 ________________________________________________________________________________ Sequence 164: 20305353, from 1 to 207, both strands analyzed. ... started at: Mon Nov 10 17:49:31 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:32 2003 ________________________________________________________________________________ Sequence 165: 20305429, from 1 to 287, both strands analyzed. ... started at: Mon Nov 10 17:49:32 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:32 2003 ________________________________________________________________________________ Sequence 166: 20307068, from 1 to 473, both strands analyzed. ... started at: Mon Nov 10 17:49:32 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:32 2003 ________________________________________________________________________________ Sequence 167: 20307082, from 1 to 476, both strands analyzed. ... started at: Mon Nov 10 17:49:32 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:32 2003 ________________________________________________________________________________ Sequence 168: 20309619, from 1 to 259, both strands analyzed. ... started at: Mon Nov 10 17:49:32 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:32 2003 ________________________________________________________________________________ Sequence 169: 20309623, from 1 to 294, both strands analyzed. ... started at: Mon Nov 10 17:49:32 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:32 2003 ________________________________________________________________________________ Sequence 170: 20310363, from 1 to 427, both strands analyzed. ... started at: Mon Nov 10 17:49:32 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:33 2003 ________________________________________________________________________________ Sequence 171: 20312144, from 1 to 306, both strands analyzed. ... started at: Mon Nov 10 17:49:33 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 488222-) 1 TTTTGGTTGT GCTCATTGAC GNGAAGNNNN CGAGCTCCTG GAGCTGGAGG TNGTTCTCGT 61 TCGNCGGCAC GTCCTTGATG CCGCCTGCCA ACATCCCGGC GTTGTCAGCC GCGGACTCCT 121 TTTGTNNNGC GNGTGGAGGA AACGGCGGCG AGGGCAAGCA GCACGAGTAG GGCAGCCACT 181 AGCGAGACG Predicted gene structure (within gDNA segment 1 to 306): Exon 1 52 243 ( 192 n); cDNA 1 189 ( 189 n); score: 0.927 MATCH 20312144+ 488222- 0.927 192 1.016 C PGS_20312144+_488222- (52 243) Alignment (genomic DNA sequence = upper lines): TTTTGGTTGT GCTCATTGAC GGCGAAGCGC GCGAGCTCCT GGAGCTGGAG GTCGTTCTCG 111 |||||||||| |||||||||| | |||| ||||||||| |||||||||| || ||||||| TTTTGGTTGT GCTCATTGAC -GNGAAGNNN NCGAGCTCCT GGAGCTGGAG GTNGTTCTCG 59 TTCGCCGGCA CGTCCTTGAT GCCGCCTGCC AACATCCCGG CGTTGTCAGC CGCGGACTCC 171 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGNCGGCA CGTCCTTGAT GCCGCCTGCC AACATCCCGG CGTTGTCAGC CGCGGACTCC 119 TTTTGTGCGC TGCGCGTGGA GGAAACGGCG GCGAGGGCAA GCAGCACGAG TAGGGCAGCC 231 |||||| ||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGT--NN NGCGNGTGGA GGAAACGGCG GCGAGGGCAA GCAGCACGAG TAGGGCAGCC 177 ACTAGCGAGA CG 243 |||||||||| || ACTAGCGAGA CG 189 hqPGS_20312144+_488222- (52 243) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 306: PGL 1 (+ strand): 52 243 AGS-1 (52 243) SCR (e 0.927) Exon 1 52 243 ( 192 n); score: 0.927 PGS (52 243) 488222- 3-phase translation of AGS-1 (+strand): . . . . . . 52 TTTTGGTTGTGCTCATTGACGGCGAAGCGCGCGAGCTCCTGGAGCTGGAGGTCGTTCTCG F W L C S L T A K R A S S W S W R S F S F G C A H - R R S A R A P G A G G R S R L V V L I D G E A R E L L E L E V V L . . . . . . 112 TTCGCCGGCACGTCCTTGATGCCGCCTGCCAACATCCCGGCGTTGTCAGCCGCGGACTCC F A G T S L M P P A N I P A L S A A D S S P A R P - C R L P T S R R C Q P R T P V R R H V L D A A C Q H P G V V S R G L . . . . . . 172 TTTTGTGCGCTGCGCGTGGAGGAAACGGCGGCGAGGGCAAGCAGCACGAGTAGGGCAGCC F C A L R V E E T A A R A S S T S R A A F V R C A W R K R R R G Q A A R V G Q P L L C A A R G G N G G E G K Q H E - G S . . 232 ACTAGCGAGACG T S E T L A R H - R D Maximal non-overlapping open reading frames (>= 64 codons): >20312144+_PGL-1_AGS-1_PPS_1 (52 243) (frame '1'; 192 bp, 64 residues) 1 FWLCSLTAKR ASSWSWRSFS FAGTSLMPPA NIPALSAADS FCALRVEETA ARASSTSRAA 61 TSET 3-phase translation of AGS-1 (-strand): . . . . . . 243 CGTCTCGCTAGTGGCTGCCCTACTCGTGCTGCTTGCCCTCGCCGCCGTTTCCTCCACGCG R L A S G C P T R A A C P R R R F L H A V S L V A A L L V L L A L A A V S S T R S R - W L P Y S C C L P S P P F P P R . . . . . . 183 CAGCGCACAAAAGGAGTCCGCGGCTGACAACGCCGGGATGTTGGCAGGCGGCATCAAGGA Q R T K G V R G - Q R R D V G R R H Q G S A Q K E S A A D N A G M L A G G I K D A A H K R S P R L T T P G C W Q A A S R . . . . . . 123 CGTGCCGGCGAACGAGAACGACCTCCAGCTCCAGGAGCTCGCGCGCTTCGCCGTCAATGA R A G E R E R P P A P G A R A L R R Q - V P A N E N D L Q L Q E L A R F A V N E T C R R T R T T S S S R S S R A S P S M . . 63 GCACAACCAAAA A Q P K H N Q S T T K Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:33 2003 ________________________________________________________________________________ Sequence 172: 20315032, from 1 to 450, both strands analyzed. ... started at: Mon Nov 10 17:49:33 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:33 2003 ________________________________________________________________________________ Sequence 173: 20315132, from 1 to 315, both strands analyzed. ... started at: Mon Nov 10 17:49:33 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 ******************************************************************************** EST sequence 2 -strand (File: 440672-) 1 CATTCAGCCG AAACGAGCTG GTCTTGCAAT ATACATGGTT ATGCAAGTCC CCACGCAACA 61 CCTACGGGTG TCCTGCCCTA TGGTATACAC GATAACATTA CCACTGGAGT CTCAGGGTAA 121 AAGGAAACCG GCTCTATGGT ATGGGAAGGT AAAAGCTACA CTACAAGGCC CCACGCCTCA 181 CGCCACATCT ATCTTAAAAA AAAAACAAGG GTATAGACAT TCGGAAGGAT ATGTTCGATC 241 GGTTATCTAT GTCCACTCAT TGGTATGGTA TGATCAATCA ATCCACGCTA TCCACTCTCT 301 AAGTTGCATT GTCTCGGCTC AACAAACCAG CCGCACCAGA TTTCGGTGAC TGCTCATCGT 361 CCCGTTCAGG TTGGATGTTC AGGTCAAN Predicted gene structure (within gDNA segment 1 to 315): Exon 1 1 222 ( 222 n); cDNA 166 387 ( 222 n); score: 0.991 MATCH 20315132+ 440672- 0.991 222 0.705 G PGS_20315132+_440672- (1 222) Alignment (genomic DNA sequence = upper lines): AGGCCCCACG CCTCACGCCA CATTTATCTA AAAAAAAAAA CAAGGGTATA GACATTCGGA 60 |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| |||||||||| AGGCCCCACG CCTCACGCCA CATCTATCTT AAAAAAAAAA CAAGGGTATA GACATTCGGA 225 AGGATATGTT CGATCGGTTA TCTATGTCCA CTCATTGGTA TGGTATGATC AATCAATCCA 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATATGTT CGATCGGTTA TCTATGTCCA CTCATTGGTA TGGTATGATC AATCAATCCA 285 CGCTATCCAC TCTCTAAGTT GCATTGTCTC GGCTCAACAA ACCAGCCGCA CCAGATTTCG 180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTATCCAC TCTCTAAGTT GCATTGTCTC GGCTCAACAA ACCAGCCGCA CCAGATTTCG 345 GTGACTGCTC ATCGTCCCGT TCAGGTTGGA TGTTCAGGTC AA 222 |||||||||| |||||||||| |||||||||| |||||||||| || GTGACTGCTC ATCGTCCCGT TCAGGTTGGA TGTTCAGGTC AA 387 hqPGS_20315132+_440672- (1 222) ******************************************************************************** EST sequence 3 -strand (File: 511377-) 1 GAGCCACTTA CGGTTNAAAT TCAGCCGAAA CGAGCTGGTC TTGCAATATA CATGGTTATG 61 CAAGTCCCCA CGCAACACCT ACGGGTGTCC TGCCCTATGG TATACACGAT AACATTACCA 121 CTGGAGTCTC AGGGTAAAAG GAAACCGGCT CTATGGTATG GGAAGGTAAA AGCTACACTA 181 CAAGGCCCCA CGCCTCACGC CACATCTATC TTAAAAAAAA AAAAAGGGTA TAAACATTCG 241 GAAGGATATG TTCGATCGGT TATCTATGTC CACTCATTGG TATGGTATGA TCAATCAATC 301 CACGCTATCC ACTCTCTNAG TTGCATTGTC TCGGCTCAAA AAACCAGCCG CACCAGATTT 361 CGGTGACTGC TCATCGTNCC GTTCAGGTTG GATGTTCAGG TCAA Predicted gene structure (within gDNA segment 1 to 315): Exon 1 1 222 ( 222 n); cDNA 183 404 ( 222 n); score: 0.968 MATCH 20315132+ 511377- 0.968 222 0.705 G PGS_20315132+_511377- (1 222) Alignment (genomic DNA sequence = upper lines): AGGCCCCACG CCTCACGCCA CATTTATCTA AAAAAAAAAA CAAGGGTATA GACATTCGGA 60 |||||||||| |||||||||| ||| ||||| |||||||||| ||||||||| ||||||||| AGGCCCCACG CCTCACGCCA CATCTATCTT AAAAAAAAAA AAAGGGTATA AACATTCGGA 242 AGGATATGTT CGATCGGTTA TCTATGTCCA CTCATTGGTA TGGTATGATC AATCAATCCA 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGATATGTT CGATCGGTTA TCTATGTCCA CTCATTGGTA TGGTATGATC AATCAATCCA 302 CGCTATCCAC TCTCTAAGTT GCATTGTCTC GGCTCAACAA ACCAGCCGCA CCAGATTTCG 180 |||||||||| ||||| |||| |||||||||| ||||||| || |||||||||| |||||||||| CGCTATCCAC TCTCTNAGTT GCATTGTCTC GGCTCAAAAA ACCAGCCGCA CCAGATTTCG 362 GTGACTGCTC ATCGTCCCGT TCAGGTTGGA TGTTCAGGTC AA 222 |||||||||| ||||| |||| |||||||||| |||||||||| || GTGACTGCTC ATCGTNCCGT TCAGGTTGGA TGTTCAGGTC AA 404 hqPGS_20315132+_511377- (1 222) ******************************************************************************** EST sequence 1 +strand (File: 440671+) 1 ACANNAGCAA CTTACGGTTC ACATTCAGCC GAAACGAGCT GGTCTTGCAA TATACATGGT 61 TATGCAAGCC CCCACGGAAC ACCTACGGGT GTCCTGCCCT ATGGTATACA CGNTAACATT 121 ACCACTGGNG TCTCAGGGTA AAAGGAAACC GGCTCTATGG TATGGGAAGG TAAAAGCTAC 181 ACTACAAGGC CCCACGNCTC ACGNCACATC TATCTTAAAA AAAAAACAAG GGTTTAGACA 241 TTCGGAAGGT TATGTTCGAT CGGTTATCTA TGNCCACTCA TTGGTATGGT ATGGTCCAAT 301 CAATCCACGG T Predicted gene structure (within gDNA segment 1 to 315): Exon 1 1 122 ( 122 n); cDNA 187 309 ( 123 n); score: 0.918 MATCH 20315132+ 440671+ 0.918 122 0.392 C PGS_20315132+_440671+ (1 122) Alignment (genomic DNA sequence = upper lines): AGGCCCCACG CCTCACGCCA CATTTATCTA AAAAAAAAAA CAAGGGTATA GACATTCGGA 60 |||||||||| |||||| || ||| ||||| |||||||||| ||||||| || |||||||||| AGGCCCCACG NCTCACGNCA CATCTATCTT AAAAAAAAAA CAAGGGTTTA GACATTCGGA 246 AGGATATGTT CGATCGGTTA TCTATGTCCA CTCATTGGTA TGGTATGAT- CAATCAATCC 119 ||| |||||| |||||||||| |||||| ||| |||||||||| ||||||| | |||||||||| AGGTTATGTT CGATCGGTTA TCTATGNCCA CTCATTGGTA TGGTATGGTC CAATCAATCC 306 ACG 122 ||| ACG 309 hqPGS_20315132+_440671+ (1 122) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 315: PGL 1 (+ strand): 1 222 AGS-1 (1 222) SCR (e 0.991) Exon 1 1 222 ( 222 n); score: 0.991 PGS (1 222) 440672- PGS (1 222) 511377- PGS (1 122) 440671+ 3-phase translation of AGS-1 (+strand): . . . . . . 1 AGGCCCCACGCCTCACGCCACATTTATCTAAAAAAAAAAACAAGGGTATAGACATTCGGA R P H A S R H I Y L K K K T R V - T F G G P T P H A T F I - K K K Q G Y R H S E A P R L T P H L S K K K N K G I D I R . . . . . . 61 AGGATATGTTCGATCGGTTATCTATGTCCACTCATTGGTATGGTATGATCAATCAATCCA R I C S I G Y L C P L I G M V - S I N P G Y V R S V I Y V H S L V W Y D Q S I H K D M F D R L S M S T H W Y G M I N Q S . . . . . . 121 CGCTATCCACTCTCTAAGTTGCATTGTCTCGGCTCAACAAACCAGCCGCACCAGATTTCG R Y P L S K L H C L G S T N Q P H Q I S A I H S L S C I V S A Q Q T S R T R F R T L S T L - V A L S R L N K P A A P D F . . . . . 181 GTGACTGCTCATCGTCCCGTTCAGGTTGGATGTTCAGGTCAA V T A H R P V Q V G C S G Q - L L I V P F R L D V Q V G D C S S S R S G W M F R S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 222 TTGACCTGAACATCCAACCTGAACGGGACGATGAGCAGTCACCGAAATCTGGTGCGGCTG L T - T S N L N G T M S S H R N L V R L - P E H P T - T G R - A V T E I W C G W D L N I Q P E R D D E Q S P K S G A A . . . . . . 162 GTTTGTTGAGCCGAGACAATGCAACTTAGAGAGTGGATAGCGTGGATTGATTGATCATAC V C - A E T M Q L R E W I A W I D - S Y F V E P R Q C N L E S G - R G L I D H T G L L S R D N A T - R V D S V D - L I I . . . . . . 102 CATACCAATGAGTGGACATAGATAACCGATCGAACATATCCTTCCGAATGTCTATACCCT H T N E W T - I T D R T Y P S E C L Y P I P M S G H R - P I E H I L P N V Y T L P Y Q - V D I D N R S N I S F R M S I P . . . . . 42 TGTTTTTTTTTTTAGATAAATGTGGCGTGAGGCGTGGGGCCT C F F F - I N V A - G V G P V F F F R - M W R E A W G L F F F L D K C G V R R G A Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:34 2003 ________________________________________________________________________________ Sequence 174: 20315250, from 1 to 327, both strands analyzed. ... started at: Mon Nov 10 17:49:34 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:34 2003 ________________________________________________________________________________ Sequence 175: 20317637, from 1 to 380, both strands analyzed. ... started at: Mon Nov 10 17:49:34 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 14243935-) 1 CTGCTGTAGA TAATGCTACA CTTTTGCGGG GTTTTCTCTC TCTCTCTCTC CCGCGAGCTG 61 ACTGACGGCT CCTTTATCTC CTCCCGCGTG CATCCCCCAG CTACTCGTCA TTCTTATCCG 121 CCTGCCTCCG CCCTCCGCCA CCGCTACCTT TATAGCTCTA GCTTCCTTCC TCCATTCCCT 181 CCTCATGCCT TCGTCTTCGT CGTCCTGCAG CCCCGCAATA GAGCATCGTA CTTCATCGTT 241 CCACTTACAT CGTTTGTTCG TTCGTTCTTC CGCGTGATCT GCTTGGGAGT TGGGGGCAAT 301 GGAGGCCTAC GTCCTGTTCG CGCGCGCCAA GGAGCAGGAG GAGGACATCG GCTGCCCGTC 361 CGAGTCGTCC GCGGCGCGTT CCACGTCCTC GTCGTCGGAC GGGGTGGACC TCGCCGACGA 421 CGCCAGCTCG TCCGGGTCCA CCTGCCGCTT CGAGATGGCC TCCCTCATGA CGCACCTCCC 481 GATCAAGAGG GGCCTGTCCA AGTTCTTCGC CGGCAAGTCG CAGTCGATAA AGTCGCTGGC 541 GGCGGTGGGC GGCATCGATG ACCTGCCCAA GCCGCCGGCG AAGCGGCTCA AGACGTCGTG 601 GAGCTGCGGC GTCGGCCTCG AGGACGCGCG CCGCGGCCCT CCCTCCGTGA CGACCGCCAA 661 TAAGCAGGCG TCCAGCAGGG CACGGCTGAC GCCGTCGGCG CTCGGCTGGA CGCCGAGAAG Predicted gene structure (within gDNA segment 1 to 380): Exon 1 89 308 ( 220 n); cDNA 294 486 ( 193 n); score: 0.845 MATCH 20317637+ 14243935- 0.845 220 0.579 G PGS_20317637+_14243935- (89 308) Alignment (genomic DNA sequence = upper lines): GGGGAATGGA GGCCTACGTC CTGTTCGCGC CCGCCAAGGA GGTGATCAGG TTCGAGGAGC 148 ||| |||||| |||||||||| ||||||||| || | | | | |||||| GGGCAATGGA GGCCTACGTC CTGTTCGCG- -CG-C----- ---G--C--- --CAAGGAGC 335 AGGAGGAGGA CATCGGCTGC CCGTCCGAGT CGTCCGCGGC GCGTTCAACG TCGTCCTCCT 208 |||||||||| |||||||||| |||||||||| |||||||||| |||||| | ||| ||| AGGAGGAGGA CATCGGCTGC CCGTCCGAGT CGTCCGCGGC GCGTTC--C- ACGT---CCT 389 CGTCGTCGTC AGACGGGGTG GACCTCGCCG ACGACGCCAG CTCGTCCGGG TCCAGCTGTC 268 |||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||| ||| | CGTCGTCG-- -GACGGGGTG GACCTCGCCG ACGACGCCAG CTCGTCCGGG TCCACCTGCC 446 ACTTCGAGAT GGCCTCCCTC ATGACGCAGC TCCCGATCAA 308 ||||||||| |||||||||| |||||||| | |||||||||| GCTTCGAGAT GGCCTCCCTC ATGACGCACC TCCCGATCAA 486 hqPGS_20317637+_14243935- (89 308) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 380: PGL 1 (+ strand): 89 308 AGS-1 (89 308) SCR (e 0.845) Exon 1 89 308 ( 220 n); score: 0.845 PGS (89 308) 14243935- 3-phase translation of AGS-1 (+strand): . . . . . . 89 GGGGAATGGAGGCCTACGTCCTGTTCGCGCCCGCCAAGGAGGTGATCAGGTTCGAGGAGC G E W R P T S C S R P P R R - S G S R S G N G G L R P V R A R Q G G D Q V R G A G M E A Y V L F A P A K E V I R F E E . . . . . . 149 AGGAGGAGGACATCGGCTGCCCGTCCGAGTCGTCCGCGGCGCGTTCAACGTCGTCCTCCT R R R T S A A R P S R P R R V Q R R P P G G G H R L P V R V V R G A F N V V L L Q E E D I G C P S E S S A A R S T S S S . . . . . . 209 CGTCGTCGTCAGACGGGGTGGACCTCGCCGACGACGCCAGCTCGTCCGGGTCCAGCTGTC R R R Q T G W T S P T T P A R P G P A V V V V R R G G P R R R R Q L V R V Q L S S S S S D G V D L A D D A S S S G S S C . . . . 269 ACTTCGAGATGGCCTCCCTCATGACGCAGCTCCCGATCAA T S R W P P S - R S S R S L R D G L P H D A A P D Q H F E M A S L M T Q L P I Maximal non-overlapping open reading frames (>= 64 codons): >20317637+_PGL-1_AGS-1_PPS_1 (90 308) (frame '2'; 219 bp, 73 residues) 1 GNGGLRPVRA RQGGDQVRGA GGGHRLPVRV VRGAFNVVLL VVVRRGGPRR RRQLVRVQLS 61 LRDGLPHDAA PDQ >20317637+_PGL-1_AGS-1_PPS_2 (91 306) (frame '0'; 216 bp, 72 residues) 1 GMEAYVLFAP AKEVIRFEEQ EEDIGCPSES SAARSTSSSS SSSDGVDLAD DASSSGSSCH 61 FEMASLMTQL PI 3-phase translation of AGS-1 (-strand): . . . . . . 308 TTGATCGGGAGCTGCGTCATGAGGGAGGCCATCTCGAAGTGACAGCTGGACCCGGACGAG L I G S C V M R E A I S K - Q L D P D E - S G A A S - G R P S R S D S W T R T S D R E L R H E G G H L E V T A G P G R . . . . . . 248 CTGGCGTCGTCGGCGAGGTCCACCCCGTCTGACGACGACGAGGAGGACGACGTTGAACGC L A S S A R S T P S D D D E E D D V E R W R R R R G P P R L T T T R R T T L N A A G V V G E V H P V - R R R G G R R - T . . . . . . 188 GCCGCGGACGACTCGGACGGGCAGCCGATGTCCTCCTCCTGCTCCTCGAACCTGATCACC A A D D S D G Q P M S S S C S S N L I T P R T T R T G S R C P P P A P R T - S P R R G R L G R A A D V L L L L L E P D H . . . . 128 TCCTTGGCGGGCGCGAACAGGACGTAGGCCTCCATTCCCC S L A G A N R T - A S I P P W R A R T G R R P P F P L L G G R E Q D V G L H S Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:34 2003 ________________________________________________________________________________ Sequence 176: 20321296, from 1 to 532, both strands analyzed. ... started at: Mon Nov 10 17:49:34 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:34 2003 ________________________________________________________________________________ Sequence 177: 20327038, from 1 to 53, both strands analyzed. ... started at: Mon Nov 10 17:49:34 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: 5069906-) 1 GCTCTGCCGC TTCGGCAACA CCTCCAGCAG CTCGCTCTGG TACGAGCTCG CCTACTGCGA 61 GGCCAAGGGC CGCATCCGGA AGGGCGACCG CGTCTGGCAG ATCGCCTTCG GCTCCGGCTT 121 CAAGTGCAAC AGCGCCGTCT GGAAGGCGCT CCGCACGGTG GACGCCAGCG AGGAGGGCAA 181 CCCGTGGACG CCGGAGGTCC ACGTGCTCCC CATCCACGTG CCCAGGGTGT CGCCCATCGA 241 CGAGACCGCA TACACGTTCC CTGACGGCGC CACGTACAAG GTCTCTGTCT CCCATGCCTG 301 AAATAATACA TATTTACATG ATTGATTTCT CATCATGTAA CTTATAATCG AGATAATGAA 361 GAAGAAGAAG CAGCAGCTAG CAGCAGCGCC GTTAGTAGGA GTATTAGTTA TTAGGGCTTG 421 ATTTGGTTAC TCTGTTTGCC GTCATTTGCA TCCACATTGC ATTTGCATGT GGTGTACGTA 481 GAGCTCTATG AACTCACGCG CCAAGAATTA TTGATTTCCA CGATTAAAAA AAAAAAAAAA 541 AAAA Predicted gene structure (within gDNA segment 53 to 1): Exon 1 51 1 ( 51 n); cDNA 93 143 ( 51 n); score: 0.902 PPA cDNA 526 544 MATCH 20327038- 5069906- 0.902 51 0.962 G PGS_20327038-_5069906- (51 1) Alignment (genomic DNA sequence = upper lines): TCTGGCAGAT CGCATTTGGT TCTGGATTCA AGTGCAACAG CGCCGTCTGG A 1 |||||||||| ||| || || || || |||| |||||||||| |||||||||| | TCTGGCAGAT CGCCTTCGGC TCCGGCTTCA AGTGCAACAG CGCCGTCTGG A 143 hqPGS_20327038-_5069906- (51 1) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 53: PGL 1 (- strand): 51 1 AGS-1 (51 1) SCR (e 0.902) Exon 1 51 1 ( 51 n); score: 0.902 PGS (51 1) 5069906- 3-phase translation of AGS-1 (-strand): . . . . . . 51 TCTGGCAGATCGCATTTGGTTCTGGATTCAAGTGCAACAGCGCCGTCTGGA S G R S H L V L D S S A T A P S G L A D R I W F W I Q V Q Q R R L W Q I A F G S G F K C N S A V W Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 1 TCCAGACGGCGCTGTTGCACTTGAATCCAGAACCAAATGCGATCTGCCAGA S R R R C C T - I Q N Q M R S A R P D G A V A L E S R T K C D L P Q T A L L H L N P E P N A I C Q Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:35 2003 ________________________________________________________________________________ Sequence 178: 20329230, from 1 to 411, both strands analyzed. ... started at: Mon Nov 10 17:49:35 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 2615448-) 1 TTGGAGAAGG AACCGGCCAC GGCGGACGAC AGCCCCTTGA AGCTGCTGCT GCCGCCGTCG 61 CTGAGGTTGT GCGACCGCCG GGACCGCCGC CGGACGAGCT GCGGGGAGGA GGCAGCCGCT 121 GCCGCAGCCG CTGCCGCCGA CTTCTCGGTG TCTGCGTCGT CGCTGCTTGC CCGGGCCACC 181 AGCAGCAGCC GCGAGATGCT GCCGCGGCAG AACGGGCAGG CTGGCGACGG CAGCGCTAGC 241 GTCACCGGGT CGGGCTTGCT GTGGCAGCAC AGCGCGAGCG TGCACGGCGC GCACATCTGG 301 TGCCCGCAGT CCTGCACCTC CATCGTGCAC GCCTGGTCG Predicted gene structure (within gDNA segment 1 to 411): Exon 1 10 63 ( 54 n); cDNA 85 136 ( 52 n); score: 0.648 Intron 1 64 124 ( 61 n); Pd: 0.000 (s: 0.63), Pa: 0.000 (s: 0.58) Exon 2 125 330 ( 206 n); cDNA 137 339 ( 203 n); score: 0.772 MATCH 20329230+ 2615448- 0.746 260 0.767 C PGS_20329230+_2615448- (10 63,125 330) Alignment (genomic DNA sequence = upper lines): CGCGGCCGGC CCATCTTGCC GATGGAGGAG GC-GATGCTG CCCATGAGGG TGCTGGTGCT 68 ||| ||||| | | | || | | ||||||| || | |||| || | | ||| | CGCCGCCGGA CGAGC-TG-C G-GGGAGGAG GCAGCCGCTG CCGCAGCCGC TGCCG..... 136 GCCCGCGTCG CCGCTGAGGC TCATGGACCG GCGGGCTCGG CAGTGCCTGG GAGACTCCAG 128 || .......... .......... .......... .......... .......... ......CCGA 140 CTTGCACCGC TCCTCGTCGT CGCCGGCCCT CGTCCGCGTG GCCACCACCA GCCGGGCGAT 188 ||| | || | || ||| || || || | ||| | ||| || || |||| | ||| CTT-C-TCGG T-GTCTGCGT CGTCGCTGCT TGCCCGGGCC ACCAGCAGCA GCCGCGAGAT 197 GCCGCCGCGG CAGAACGGGC AGGTCGGCAG CGGCTGGGAC TGCGTCGCCG GGTTGGGCTT 248 || ||||||| |||||||||| ||| ||| |||| | | ||||| ||| ||| |||||| GCTGCCGCGG CAGAACGGGC AGGCTGGCGA CGGCAGCGCT AGCGTCACCG GGTCGGGCTT 257 GGCGTGGCAG CACAGCGCCA GCGTGCACGC CGCGCACATC TGGTGCCCGC ACTCCCGGAC 308 | ||||||| |||||||| | ||||||||| |||||||||| |||||||||| | ||| | || GCTGTGGCAG CACAGCGCGA GCGTGCACGG CGCGCACATC TGGTGCCCGC AGTCCTGCAC 317 CTCGATGCTG CACGCCTGCT CG 330 ||| || || |||||||| | || CTCCATCGTG CACGCCTGGT CG 339 hqPGS_20329230+_2615448- (125 330) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 411: PGL 1 (+ strand): 125 330 AGS-1 (125 330) SCR (e 0.772) Exon 1 125 330 ( 206 n); score: 0.772 PGS (125 330) 2615448- 3-phase translation of AGS-1 (+strand): . . . . . . 125 CCAGCTTGCACCGCTCCTCGTCGTCGCCGGCCCTCGTCCGCGTGGCCACCACCAGCCGGG P A C T A P R R R R P S S A W P P P A G Q L A P L L V V A G P R P R G H H Q P G S L H R S S S S P A L V R V A T T S R . . . . . . 185 CGATGCCGCCGCGGCAGAACGGGCAGGTCGGCAGCGGCTGGGACTGCGTCGCCGGGTTGG R C R R G R T G R S A A A G T A S P G W D A A A A E R A G R Q R L G L R R R V G A M P P R Q N G Q V G S G W D C V A G L . . . . . . 245 GCTTGGCGTGGCAGCACAGCGCCAGCGTGCACGCCGCGCACATCTGGTGCCCGCACTCCC A W R G S T A P A C T P R T S G A R T P L G V A A Q R Q R A R R A H L V P A L P G L A W Q H S A S V H A A H I W C P H S . . . 305 GGACCTCGATGCTGCACGCCTGCTCG G P R C C T P A D L D A A R L L R T S M L H A C S Maximal non-overlapping open reading frames (>= 64 codons): >20329230+_PGL-1_AGS-1_PPS_3 (125 328) (frame '1'; 204 bp, 68 residues) 1 PACTAPRRRR PSSAWPPPAG RCRRGRTGRS AAAGTASPGW AWRGSTAPAC TPRTSGARTP 61 GPRCCTPA >20329230+_PGL-1_AGS-1_PPS_2 (126 329) (frame '2'; 204 bp, 68 residues) 1 QLAPLLVVAG PRPRGHHQPG DAAAAERAGR QRLGLRRRVG LGVAAQRQRA RRAHLVPALP 61 DLDAARLL >20329230+_PGL-1_AGS-1_PPS_1 (127 330) (frame '0'; 204 bp, 68 residues) 1 SLHRSSSSPA LVRVATTSRA MPPRQNGQVG SGWDCVAGLG LAWQHSASVH AAHIWCPHSR 61 TSMLHACS 3-phase translation of AGS-1 (-strand): . . . . . . 330 CGAGCAGGCGTGCAGCATCGAGGTCCGGGAGTGCGGGCACCAGATGTGCGCGGCGTGCAC R A G V Q H R G P G V R A P D V R G V H E Q A C S I E V R E C G H Q M C A A C T S R R A A S R S G S A G T R C A R R A . . . . . . 270 GCTGGCGCTGTGCTGCCACGCCAAGCCCAACCCGGCGACGCAGTCCCAGCCGCTGCCGAC A G A V L P R Q A Q P G D A V P A A A D L A L C C H A K P N P A T Q S Q P L P T R W R C A A T P S P T R R R S P S R C R . . . . . . 210 CTGCCCGTTCTGCCGCGGCGGCATCGCCCGGCTGGTGGTGGCCACGCGGACGAGGGCCGG L P V L P R R H R P A G G G H A D E G R C P F C R G G I A R L V V A T R T R A G P A R S A A A A S P G W W W P R G R G P . . . 150 CGACGACGAGGAGCGGTGCAAGCTGG R R R G A V Q A D D E E R C K L A T T R S G A S W Maximal non-overlapping open reading frames (>= 64 codons): >20329230-_PGL-1_AGS-1_PPS_3 (330 127) (frame '1'; 204 bp, 68 residues) 1 RAGVQHRGPG VRAPDVRGVH AGAVLPRQAQ PGDAVPAAAD LPVLPRRHRP AGGGHADEGR 61 RRRGAVQA >20329230-_PGL-1_AGS-1_PPS_2 (329 126) (frame '2'; 204 bp, 68 residues) 1 EQACSIEVRE CGHQMCAACT LALCCHAKPN PATQSQPLPT CPFCRGGIAR LVVATRTRAG 61 DDEERCKL >20329230-_PGL-1_AGS-1_PPS_1 (328 125) (frame '0'; 204 bp, 68 residues) 1 SRRAASRSGS AGTRCARRAR WRCAATPSPT RRRSPSRCRP ARSAAAASPG WWWPRGRGPA 61 TTRSGASW ... finished at: Mon Nov 10 17:49:35 2003 ________________________________________________________________________________ Sequence 179: 20329382, from 1 to 372, both strands analyzed. ... started at: Mon Nov 10 17:49:35 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: 409596-) 1 ATACAACCTC GACCATCTCG ACGGAGCCAG CCTNNTCGAA GAGCCCGGCC ANNTGCGCAC 61 TGTCGANNCT GAACGGCAGG TTACCGACGA ACAGCTTGAG GTCCTCGGAG AACTCCCCGT 121 CCT Predicted gene structure (within gDNA segment 372 to 1): Exon 1 367 263 ( 105 n); cDNA 19 123 ( 105 n); score: 0.933 MATCH 20329382- 409596- 0.933 105 0.854 C PGS_20329382-_409596- (367 263) Alignment (genomic DNA sequence = upper lines): CGACGGAGCC CGCCTGCTCG AAGAGCCCGG CCAGCTGCGC ACTGTCGACG CTGAACGGCA 308 |||||||||| |||| ||| |||||||||| ||| ||||| |||||||| |||||||||| CGACGGAGCC AGCCTNNTCG AAGAGCCCGG CCANNTGCGC ACTGTCGANN CTGAACGGCA 78 GGTTACCGAC GAACAGCTTG AGGTCCTCGG AGAACTCCCC GTCCT 263 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GGTTACCGAC GAACAGCTTG AGGTCCTCGG AGAACTCCCC GTCCT 123 hqPGS_20329382-_409596- (367 263) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 372: PGL 1 (- strand): 367 263 AGS-1 (367 263) SCR (e 0.933) Exon 1 367 263 ( 105 n); score: 0.933 PGS (367 263) 409596- 3-phase translation of AGS-1 (-strand): . . . . . . 367 CGACGGAGCCCGCCTGCTCGAAGAGCCCGGCCAGCTGCGCACTGTCGACGCTGAACGGCA R R S P P A R R A R P A A H C R R - T A D G A R L L E E P G Q L R T V D A E R Q T E P A C S K S P A S C A L S T L N G . . . . . 307 GGTTACCGACGAACAGCTTGAGGTCCTCGGAGAACTCCCCGTCCT G Y R R T A - G P R R T P R P V T D E Q L E V L G E L P V R L P T N S L R S S E N S P S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 263 AGGACGGGGAGTTCTCCGAGGACCTCAAGCTGTTCGTCGGTAACCTGCCGTTCAGCGTCG R T G S S P R T S S C S S V T C R S A S G R G V L R G P Q A V R R - P A V Q R R D G E F S E D L K L F V G N L P F S V . . . . . 323 ACAGTGCGCAGCTGGCCGGGCTCTTCGAGCAGGCGGGCTCCGTCG T V R S W P G S S S R R A P S Q C A A G R A L R A G G L R D S A Q L A G L F E Q A G S V Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:36 2003 ________________________________________________________________________________ Sequence 180: 20329852, from 1 to 160, both strands analyzed. ... started at: Mon Nov 10 17:49:36 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:36 2003 ________________________________________________________________________________ Sequence 181: 22219712, from 1 to 365, both strands analyzed. ... started at: Mon Nov 10 17:49:36 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:36 2003 ________________________________________________________________________________ Sequence 182: 22223010, from 1 to 624, both strands analyzed. ... started at: Mon Nov 10 17:49:36 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: 12046896-) 1 TATATAAGTT ATCGTAGTAT ACTAGTATTA TATATTCCTG TTGCAACGCA TGGGCATTCA 61 GCTAGTTATT ACAAACATGT CTAAGGTGCT GTCCTGATTT TTTGCCCGAC AGCCCCACTA 121 CCGGGTAACT TTATTACAAG CATGTCGTGC TCGTGCCACG AGAGAGCAAT GAAGCGCAGC 181 CAGGGATATT GCTAACACCG TACACTCCCC TACGTACAGT ACAGATCATT CAAGCAGCGC 241 CTCAAAACAT AGTCCACTTA AGGCCCTGTT CGGTTGTTCC GGATTGGAGC CCTGGATTAA 301 TTCATAGTCG GATTACTTCT CTAATTAAAA AAAAAATTTG ATGAGCTGAA ATGAATCCTG 361 GCTCGTTCCG GTACAACCGA ACAGGCCCTA ATAGTCTGTG CACCCACTGA TTATTCACGA 421 ACAAAAACTT ACAGATCCAA CACTAGCACT AATACGATTC AGTGTGTAAC GCCGTAACAT 481 ATATATATAT TGGTAACGAG AACTCTGGCA Predicted gene structure (within gDNA segment 501 to 1): Exon 1 196 121 ( 76 n); cDNA 1 75 ( 75 n); score: 0.908 MATCH 22223010- 12046896- 0.908 76 0.152 G PGS_22223010-_12046896- (196 121) Alignment (genomic DNA sequence = upper lines): TATATAAGTT ATCGTAATAT ACTGGTATTA TATATTCCCG TTGCAACGCA CGGGCATTCA 137 |||||||||| |||||| ||| ||| |||||| |||||||| | |||||||||| ||||||||| TATATAAGTT ATCGTAGTAT ACTAGTATTA TATATTCCTG TTGCAACGCA TGGGCATTCA 60 GCTAGTTGAA TAAAAA 121 ||||||| | || ||| GCTAGTT-AT TACAAA 75 hqPGS_22223010-_12046896- (196 121) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 624: PGL 1 (- strand): 196 121 AGS-1 (196 121) SCR (e 0.908) Exon 1 196 121 ( 76 n); score: 0.908 PGS (196 121) 12046896- 3-phase translation of AGS-1 (-strand): . . . . . . 196 TATATAAGTTATCGTAATATACTGGTATTATATATTCCCGTTGCAACGCACGGGCATTCA Y I S Y R N I L V L Y I P V A T H G H S I - V I V I Y W Y Y I F P L Q R T G I Q Y K L S - Y T G I I Y S R C N A R A F . . 136 GCTAGTTGAATAAAAA A S - I K L V E - K S - L N K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 121 TTTTTATTCAACTAGCTGAATGCCCGTGCGTTGCAACGGGAATATATAATACCAGTATAT F L F N - L N A R A L Q R E Y I I P V Y F Y S T S - M P V R C N G N I - Y Q Y I F I Q L A E C P C V A T G I Y N T S I . . 181 TACGATAACTTATATA Y D N L Y T I T Y I L R - L I Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:37 2003 ________________________________________________________________________________ Sequence 183: 22223143, from 1 to 198, both strands analyzed. ... started at: Mon Nov 10 17:49:37 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:37 2003 ________________________________________________________________________________ Sequence 184: 22223145, from 1 to 305, both strands analyzed. ... started at: Mon Nov 10 17:49:37 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:37 2003 ________________________________________________________________________________ Sequence 185: 22227189, from 1 to 234, both strands analyzed. ... started at: Mon Nov 10 17:49:37 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 ******************************************************************************** EST sequence 1 -strand (File: 6626564-) 1 AGCCGAATAT CCAATGAAAT AGTCTACCAA GTACCAAGTA CCAAGTTTTC ATTGCTGCTG 61 ATAGTCGCAT GAGATCATTG TCTAAACAGT TCGGTACCAC TTTTAATTTA TCACCAGCCA 121 ATAGTACACT CGAAGCAGAG ACTTGCAGGT TGCATCTAAT CATCGTCGTC AAGGACATTC 181 CGACGCCTCT GAATCGTAAC TTTGGTTTGC TTGCTTGTGT GGCTGTTAAT TTGCTCTAGA 241 AGGGAGATGA GTCTTTCTTC AGACACCTTC TCAGATATTC CACCAGTTTG AGCAGCTCTC 301 AGCAAAACAT CCTCCACCCC TCTTGCTTTG TCAGGTTTGA CCAAAGCTAT GCGGGAAAGC 361 CTTTCTCTTG CTTCAGAAGA TAATATCTGA GCAAGCATCA TCTGCCGGCG TTCCTCAGCT 421 TCCTGTTTCG CGTCTTCCTG AGCCTTTTGT TGGCCCGCAT TTTGCTGATT TGCCGCACCG 481 TGTTGTAGTT CTCGCATCCG TCTCTGCCTG ATAGCTTCCA ACTCTGGGTC AGCCATCTTC 541 CGCGCCCGCA GCGGAGATCG CAAGCCCCCA CTCCGGACTT CACTTGAGCG GCGACGGCGT 601 CCGCGGCGAG CTGTGGCAGG CAATGAGGCA ACAGCGAATC TAGCCTC Predicted gene structure (within gDNA segment 234 to 1): Exon 1 196 123 ( 74 n); cDNA 461 534 ( 74 n); score: 0.946 MATCH 22227189- 6626564- 0.946 74 0.316 G PGS_22227189-_6626564- (196 123) Alignment (genomic DNA sequence = upper lines): TTTGGTGTCT TACCGCACCG TGTTGTAGTT CTCGCATCCG TCTCTGCCTG ATAGCTTCCA 137 |||| || | | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCTGATT TGCCGCACCG TGTTGTAGTT CTCGCATCCG TCTCTGCCTG ATAGCTTCCA 520 ACTCTGGGTC AGCC 123 |||||||||| |||| ACTCTGGGTC AGCC 534 hqPGS_22227189-_6626564- (196 123) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 234: PGL 1 (- strand): 196 123 AGS-1 (196 123) SCR (e 0.946) Exon 1 196 123 ( 74 n); score: 0.946 PGS (196 123) 6626564- 3-phase translation of AGS-1 (-strand): . . . . . . 196 TTTGGTGTCTTACCGCACCGTGTTGTAGTTCTCGCATCCGTCTCTGCCTGATAGCTTCCA F G V L P H R V V V L A S V S A - - L P L V S Y R T V L - F S H P S L P D S F Q W C L T A P C C S S R I R L C L I A S . . 136 ACTCTGGGTCAGCC T L G Q L W V S N S G S A Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 123 GGCTGACCCAGAGTTGGAAGCTATCAGGCAGAGACGGATGCGAGAACTACAACACGGTGC G - P R V G S Y Q A E T D A R T T T R C A D P E L E A I R Q R R M R E L Q H G A L T Q S W K L S G R D G C E N Y N T V . . 183 GGTAAGACACCAAA G K T P V R H Q R - D T K Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:37 2003 ________________________________________________________________________________ Sequence 186: 22230327, from 1 to 583, both strands analyzed. ... started at: Mon Nov 10 17:49:37 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:37 2003 ________________________________________________________________________________ Sequence 187: 22802312, from 1 to 378, both strands analyzed. ... started at: Mon Nov 10 17:49:37 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:38 2003 ________________________________________________________________________________ Sequence 188: 22803945, from 1 to 438, both strands analyzed. ... started at: Mon Nov 10 17:49:38 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:38 2003 ________________________________________________________________________________ Sequence 189: 22804248, from 1 to 181, both strands analyzed. ... started at: Mon Nov 10 17:49:38 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:38 2003 ________________________________________________________________________________ Sequence 190: 22804911, from 1 to 229, both strands analyzed. ... started at: Mon Nov 10 17:49:38 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 440773+) 1 NAGAGGAGGG CCCTTCTGCT TGTTTCTCCG CTTTGCAAGA TGTCGTCCCC GAGCAAGCGC 61 CGCGAGATGG ACCTTATGAA GCTGATGATG AGCGACTACA AGGTGGAGAT GGTGAACGAC 121 GGGATGCAGG AATTCTTCGT CGAATTCAAG GGCCCGGCCG AAAGTATCTA CCAAGGTGGT 181 GTCTGGAAGG TTCGGGTAGA ACTGCCTGAT GCATACCCTT ACAAATCCCC GTCCATCGGC 241 TTCATCAACA AGATTTATCA CCCGAATGTC GATGAGATGT CTGGCTCTGT CTGTTTGGAT 301 GTCATAAACC AGACATGGAG CCCAATGTTT GATCTAGTAA ATGTTTTTGA AGTATTCCTT 361 CCACAGCTGT TGCTGTACCC AAATCCTTCT GATCCATTAA ATGGGGAG Predicted gene structure (within gDNA segment 1 to 229): Exon 1 105 157 ( 53 n); cDNA 279 331 ( 53 n); score: 0.943 MATCH 22804911+ 440773+ 0.943 53 0.231 G PGS_22804911+_440773+ (105 157) Alignment (genomic DNA sequence = upper lines): GTCTGGCTCT GTATGTTTAG ATGTCATAAA CCAAACATGG AGCCCAATGT TTG 157 |||||||||| || ||||| | |||||||||| ||| |||||| |||||||||| ||| GTCTGGCTCT GTCTGTTTGG ATGTCATAAA CCAGACATGG AGCCCAATGT TTG 331 hqPGS_22804911+_440773+ (105 157) ******************************************************************************** EST sequence 2 +strand (File: 453315+) 1 AGAGGAGGGC CCTTCTGCTT GTTTCTCCGC TTTGCAAGAT GTCGTCCCCG AGCAAGCGCC 61 GCGAGATGGA CCTTATGAAG CTGATGATGA GCGACTACAA GGTGGAGATG GTGAACGACG 121 GGATGCAGGA ATTCTTCGTC GAATTCAAGG GCCCGGCCGA AAGTATCTAC CAAGGTGGTG 181 TCTGGAAGGT TCGGGTAGAA CTGCCTGATG CATACCCTTA CAAATCCCCG TCCATCGGCT 241 TCATCAACAA GATTTATCAC CCGAATGTCG ATGAGATGTC TGGCTCTGTC TGTTTGGATG 301 TCATAAACCA GACATGGAGC CCAATGTTTG ATCTAGTAAA TGTTTTTGAA GTATTCCTTC 361 CACAGCTGTT GCTGTACCCA AATCCTTCTG ATCCATTAAA TGGGGAGGCT GCAGACT Predicted gene structure (within gDNA segment 1 to 229): Exon 1 105 157 ( 53 n); cDNA 278 330 ( 53 n); score: 0.943 MATCH 22804911+ 453315+ 0.943 53 0.231 G PGS_22804911+_453315+ (105 157) Alignment (genomic DNA sequence = upper lines): GTCTGGCTCT GTATGTTTAG ATGTCATAAA CCAAACATGG AGCCCAATGT TTG 157 |||||||||| || ||||| | |||||||||| ||| |||||| |||||||||| ||| GTCTGGCTCT GTCTGTTTGG ATGTCATAAA CCAGACATGG AGCCCAATGT TTG 330 hqPGS_22804911+_453315+ (105 157) ******************************************************************************** EST sequence 3 -strand (File: 4217951-) 1 GATGCATACC CTTACAAATC CCCGTCCATC GGCTTCATCA ACAAGATTTA TCACCCGAAT 61 GTCGATGAGA TGTCTGGCTC TGTCTGTTTG GATGTCATAA ACCAGACATG GAGCCCAATG 121 TTTGATCTAG TAAATGTTTT TGAAGTATTC CTTCCACAGC TGTTGCTGTA CCCAAATCCT 181 TCTGATCCAT TAAATGGGGA GGCTGCAGCA CTGATGATGC GTGATCGGCC TGTTTATGAA 241 CAGAAAGTGA AAGAATATTG TGAAAAGTAT GCTAAACCAG AGGACGCTGG CATCACCCCG 301 GAAGACAAGT CCAGTGACGA AGAGCTTAGC GATGACGACG ACGACGACAA CGACTCCGGG 361 GACGAAGCTA TACTTGGCAA TCCTGATCCT TAGTCTGAGT AGGAAACAGC GCAGTCAGCT 421 CATCAATACA AAGTCCAATT GCAGAAACTG CAAGTAAACA AAAACTGAAA AAAAAAAAAA 481 AAAAACTCGA GG Predicted gene structure (within gDNA segment 1 to 229): Exon 1 105 157 ( 53 n); cDNA 72 124 ( 53 n); score: 0.943 PPA cDNA 468 486 MATCH 22804911+ 4217951- 0.943 53 0.231 G PGS_22804911+_4217951- (105 157) Alignment (genomic DNA sequence = upper lines): GTCTGGCTCT GTATGTTTAG ATGTCATAAA CCAAACATGG AGCCCAATGT TTG 157 |||||||||| || ||||| | |||||||||| ||| |||||| |||||||||| ||| GTCTGGCTCT GTCTGTTTGG ATGTCATAAA CCAGACATGG AGCCCAATGT TTG 124 hqPGS_22804911+_4217951- (105 157) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 229: PGL 1 (+ strand): 105 157 AGS-1 (105 157) SCR (e 0.943) Exon 1 105 157 ( 53 n); score: 0.943 PGS (105 157) 440773+ PGS (105 157) 453315+ PGS (105 157) 4217951- 3-phase translation of AGS-1 (+strand): . . . . . . 105 GTCTGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG V W L C M F R C H K P N M E P N V S G S V C L D V I N Q T W S P M F L A L Y V - M S - T K H G A Q C L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 157 CAAACATTGGGCTCCATGTTTGGTTTATGACATCTAAACATACAGAGCCAGAC Q T L G S M F G L - H L N I Q S Q K H W A P C L V Y D I - T Y R A R N I G L H V W F M T S K H T E P D Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:49:39 2003 ________________________________________________________________________________ Sequence 191: 22805293, from 1 to 510, both strands analyzed. ... started at: Mon Nov 10 17:49:39 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:39 2003 ________________________________________________________________________________ Sequence 192: 22805593, from 1 to 572, both strands analyzed. ... started at: Mon Nov 10 17:49:39 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:49:39 2003 ________________________________________________________________________________ Sequence 193: 22808689, from 1 to 538, both strands analyzed. ... started at: Mon Nov 10 17:49:39 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 3 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 4 +strand (File: 9733228+) 1 GGGAATCCCG GCATGGACAT GTCACAGCGG TTTCTGTTGC CTCTGGAATT TCGTAGGCAG 61 AAGTTAGCCA AAAAAACTTA TGAACTTACT GGAGGAAATC AGTGATAAGA TGGATAAGGC 121 CTACTTCGTG GATCTCTTTG TAAGGGCATC TAACATGCCA GCGATAAGGA TGTATGAAAA 181 GCTTGGTTAT GTGGTTTATC GAAGGGTGCT CCGGTACTAC TCAGGGGAAG AAGATGGCCT 241 CGATATGAGA AAAGCATTAT CACAAGATGT TGAGAAGAAG TCCATCATAC CACTCAAGAG 301 GCCAATTACG CCTGATGAAC TTGAATATGA TTGATGTTAG CTACCTGGTG CTTACGTTGG 361 ATGCTCCGGT GGGGAATTTG ACAGGCTTTG AAAATCTGGT AGTGAGTGTA TTGTTGTCGT 421 TTTTACGCCT GCTAGGGGAC AGGTTTTGAT GGTGAATTCT GCAGTTTTTG TATTTGAGAA 481 TAGCAAGAAC TATGACTTGG CATGGAATCA AATTGCTTTG TTGTGATGTC AAAAAAAAAA 541 AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 538 to 1): Exon 1 538 320 ( 219 n); cDNA 314