GeneSeqer. Version of October 20, 2003. Date run: Mon Nov 10 17:48:30 2003 (Bayesian) Splice site model (species): Zea mays Fast search parameters: MinMatchLen 12, MinQualityHSP 12, MinQualityCHAIN 30. ________________________________________________________________________________ Sequence 1: 1006005A10YNX, from 1 to 312, both strands analyzed. ... started at: Mon Nov 10 17:48:30 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 5268575-) 1 GTTTTGTAGG ATGTCCAAAC AGATGCTTCC ATCCGCATAA ATGTTTGGGT GAAACATCCT 61 CGAAACAAAC CGAACAGTCG GAGGTTTGTT GGGGTAATCT TCTGTAAATT GCAGAGTCAG 121 CTTGAACGTG CCTCCGTCCC ACGGCGTGTC ATCCGGCCCG AATATGACGG CGTTCCAGAG 181 CATGATGTTG TTGTCGTGCG GCGCGCCGCT GATGCCGGCG GGCGGGTCCT GCTGCAACCG 241 CTTGAAGTCC CGCATCAGGC GCTTCCTCGC CGGCGTCGAC ATCTCCGCCT CCCAGTCCCA 301 GACCCTAGCT CAGTCCCCGA TCTCTGGTCC TGCAGGCCGC AGGCCGCAGG CCGCAGCACG 361 CACGCCTCCG CTCCCTGGTT CTCCCGTCTC CCTCCCTCCC TCCTGACCTG GTACGAGACG 421 CGAGAGGAGA AGCTTCGGAG CGAGAAACGG GCAGGTGGAT GTGGGGGAGG ACGGAGCCGA 481 GCGCCCGAGC CTGGTCCCCG GGTGCGAAAA CGACGCGGCG CGAGCGGCGT GACGTGACGT 541 GCCCCCTTCA CCCGAGCGGC CGTGATCGCG TTACCTCCTA GCGCGCGTCG CCTCCTGAGT 601 CTGATGTCGT GCCGAATTCT TTGGAT Predicted gene structure (within gDNA segment 1 to 312): Exon 1 135 312 ( 178 n); cDNA 354 527 ( 174 n); score: 0.978 MATCH 1006005A10YNX+ 5268575- 0.978 178 0.571 G PGS_1006005A10YNX+_5268575- (135 312) Alignment (genomic DNA sequence = upper lines): CAGCACGCAC GCCTCCGCTC CCTGGTTCTC CCGTCTCCCT CCCTCCCTCC CTCCTGACCT 194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||| CAGCACGCAC GCCTCCGCTC CCTGGTTCTC CCGTCTCCCT CCCTCCCT-- --CCTGACCT 409 GGTACGAGAC GCGAGAGGAG AAGCTTCGGA GCGAGAAACG GGCAGGTGGA TGTGGGGGAG 254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTACGAGAC GCGAGAGGAG AAGCTTCGGA GCGAGAAACG GGCAGGTGGA TGTGGGGGAG 469 GACGGAGCCG AGCGCCCGAG CCTGGTCCCC GGGTGCGAAA ACGACGCGGC GCGAGCGG 312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACGGAGCCG AGCGCCCGAG CCTGGTCCCC GGGTGCGAAA ACGACGCGGC GCGAGCGG 527 hqPGS_1006005A10YNX+_5268575- (135 312) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 312: PGL 1 (+ strand): 135 312 AGS-1 (135 312) SCR (e 0.978) Exon 1 135 312 ( 178 n); score: 0.978 PGS (135 312) 5268575- 3-phase translation of AGS-1 (+strand): . . . . . . 135 CAGCACGCACGCCTCCGCTCCCTGGTTCTCCCGTCTCCCTCCCTCCCTCCCTCCTGACCT Q H A R L R S L V L P S P S L P P S - P S T H A S A P W F S R L P P S L P P D L A R T P P L P G S P V S L P P S L L T . . . . . . 195 GGTACGAGACGCGAGAGGAGAAGCTTCGGAGCGAGAAACGGGCAGGTGGATGTGGGGGAG G T R R E R R S F G A R N G Q V D V G E V R D A R G E A S E R E T G R W M W G R W Y E T R E E K L R S E K R A G G C G G . . . . . . 255 GACGGAGCCGAGCGCCCGAGCCTGGTCCCCGGGTGCGAAAACGACGCGGCGCGAGCGG D G A E R P S L V P G C E N D A A R A T E P S A R A W S P G A K T T R R E R G R S R A P E P G P R V R K R R G A S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 312 CCGCTCGCGCCGCGTCGTTTTCGCACCCGGGGACCAGGCTCGGGCGCTCGGCTCCGTCCT P L A P R R F R T R G P G S G A R L R P R S R R V V F A P G D Q A R A L G S V L A R A A S F S H P G T R L G R S A P S . . . . . . 252 CCCCCACATCCACCTGCCCGTTTCTCGCTCCGAAGCTTCTCCTCTCGCGTCTCGTACCAG P P H P P A R F S L R S F S S R V S Y Q P H I H L P V S R S E A S P L A S R T R S P T S T C P F L A P K L L L S R L V P . . . . . . 192 GTCAGGAGGGAGGGAGGGAGGGAGACGGGAGAACCAGGGAGCGGAGGCGTGCGTGCTG V R R E G G R E T G E P G S G G V R A S G G R E G G R R E N Q G A E A C V L G Q E G G R E G D G R T R E R R R A C Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:31 2003 ________________________________________________________________________________ Sequence 2: 1006027G11YNX, from 1 to 830, both strands analyzed. ... started at: Mon Nov 10 17:48:31 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:31 2003 ________________________________________________________________________________ Sequence 3: 1006028E01YNX, from 1 to 1061, both strands analyzed. ... started at: Mon Nov 10 17:48:31 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:31 2003 ________________________________________________________________________________ Sequence 4: 1006039C05YNX, from 1 to 760, both strands analyzed. ... started at: Mon Nov 10 17:48:31 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 14701006-) 1 GGCGGCTCCT ATTGCTGCAC GTGGAGGCAG CGGCGGGTTC GCTCGGAGGA TGAGCGCGCC 61 GGCGGGCCAG GAGGACAGTA ACGGCAGCAG CTCCGAACCC GAGAGGGACA TCAGGACGCG 121 CGTCGTTAAC CTGGTCAAGA AGTTCGACAA GATCGACGCC GACAAGGTGA CCGAGACTGC 181 AGACTTCCAA AAGGACCTGA GCTTGGACAG CTTAGACCGG GTGGAACTTG TTATGGCCTT 241 TGAACAAGAG TTCTCCGTTG AGATCCCTGA TGACAAGGCT GACAAGCTGA CCTGTTGTGC 301 GGATGTTGCC AAGTACATCA TATCTGAATC TCAAACGAGT GATACAAAAA ACCGGTGGAT 361 CCTGAGGGAC AGATGGAACC GAGTGCAATG TTTGCTTTTG TGTGTGTGTG TTTATCATAA 421 TGAGTCTGGG TTACAAAGGC GATCTGTGCG CATGATTTCC TTTTAGTTTT TCCAGTATGG 481 AA Predicted gene structure (within gDNA segment 1 to 760): Exon 1 62 157 ( 96 n); cDNA 1 96 ( 96 n); score: 0.969 MATCH 1006039C05YNX+ 14701006- 0.969 96 0.199 C PGS_1006039C05YNX+_14701006- (62 157) Alignment (genomic DNA sequence = upper lines): GGCGGCTCCT ATTGCTGCAC GTGGAGGCGG CGGCGGGTTC GCTCGGAGAA TGAGCGCGCC 121 |||||||||| |||||||||| |||||||| | |||||||||| |||||||| | |||||||||| GGCGGCTCCT ATTGCTGCAC GTGGAGGCAG CGGCGGGTTC GCTCGGAGGA TGAGCGCGCC 60 GGCGGGCCAG GAGGACAGTA GCGGCAGCAG CTCCGA 157 |||||||||| |||||||||| ||||||||| |||||| GGCGGGCCAG GAGGACAGTA ACGGCAGCAG CTCCGA 96 hqPGS_1006039C05YNX+_14701006- (62 157) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 760: PGL 1 (+ strand): 62 157 AGS-1 (62 157) SCR (e 0.969) Exon 1 62 157 ( 96 n); score: 0.969 PGS (62 157) 14701006- 3-phase translation of AGS-1 (+strand): . . . . . . 62 GGCGGCTCCTATTGCTGCACGTGGAGGCGGCGGCGGGTTCGCTCGGAGAATGAGCGCGCC G G S Y C C T W R R R R V R S E N E R A A A P I A A R G G G G G F A R R M S A P R L L L L H V E A A A G S L G E - A R . . . . 122 GGCGGGCCAGGAGGACAGTAGCGGCAGCAGCTCCGA G G P G G Q - R Q Q L R A G Q E D S S G S S S R R A R R T V A A A A P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 157 TCGGAGCTGCTGCCGCTACTGTCCTCCTGGCCCGCCGGCGCGCTCATTCTCCGAGCGAAC S E L L P L L S S W P A G A L I L R A N R S C C R Y C P P G P P A R S F S E R T G A A A A T V L L A R R R A H S P S E . . . . 97 CCGCCGCCGCCTCCACGTGCAGCAATAGGAGCCGCC P P P P P R A A I G A A R R R L H V Q Q - E P P A A A S T C S N R S R Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:32 2003 ________________________________________________________________________________ Sequence 5: 1006078B06YNX, from 1 to 476, both strands analyzed. ... started at: Mon Nov 10 17:48:32 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 ******************************************************************************** EST sequence 1 -strand (File: 5757399-) 1 TCAGCATCAA GCTGCTGCCT CTTAGCCAAG CCCAAGGCCG CCAAGCCCAA GGCACCCAAG 61 GCCGCGCCCG AGCCCAAGCC CTCGCCGAAG GCGAAGGCCA AGACCGCTGC GAAGCCCAAG 121 GCGGCGTCGC CCAAACCCAA GGCCAAGGCC AAGGCCAAGC CTGTCGCTCC TGCCGCCGCG 181 TCGCCCAAGC CCCGCGGGCG CCCTCCCAAG GTCGCCAAGA CCTCCGCCAA GGCCTCCCCC 241 GCCAAGGCAG CCAAGAAGCC GGCTGCTCCT GCCAAGAAGG GAAAGGCAGC GGCGGCTCCT 301 AAGAAGGTGG CAACCCCGAA GAAGGCTGCT GCTGCTGCCG CCCCGGCCAG GAAGGGCGTG 361 GCCAGGAAGG CCAAGAAGTA GTCTGCCTGC CTTGTCGCTG GCGAGATCCC CCCCTCAATT 421 CCG Predicted gene structure (within gDNA segment 476 to 1): Exon 1 476 205 ( 272 n); cDNA 7 276 ( 270 n); score: 0.960 Intron 1 204 134 ( 71 n); Pd: 0.000 (s: 0.98), Pa: 0.902 (s: 1.00) Exon 2 133 1 ( 133 n); cDNA 277 408 ( 132 n); score: 0.992 MATCH 1006078B06YNX- 5757399- 0.970 405 0.957 C PGS_1006078B06YNX-_5757399- (476 205,133 1) Alignment (genomic DNA sequence = upper lines): TCAAGCTGCG GGCCACCGAC GCCAAGCCCA AGGCCGCCAA GCCCAAGGCA CCCAAGGCGG 417 ||||||||| ||| | | |||||||||| |||||||||| |||||||||| |||||||| | TCAAGCTGC- TGCCTCTTA- GCCAAGCCCA AGGCCGCCAA GCCCAAGGCA CCCAAGGCCG 64 CGCCCAAGCC CAAGCCCTCG CCGAAGGCGA AGGCCAAGCC CGCTGCGAAG CCCAAGGCGG 357 ||||| |||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| CGCCCGAGCC CAAGCCCTCG CCGAAGGCGA AGGCCAAGAC CGCTGCGAAG CCCAAGGCGG 124 CGTCGCCCAA ACCCAAGGCC AAGGCCAAGG CCAAGCGTGT CGCTCCTGCC GCCGCGTCGC 297 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| CGTCGCCCAA ACCCAAGGCC AAGGCCAAGG CCAAGCCTGT CGCTCCTGCC GCCGCGTCGC 184 CCAAGCCCCG CGGGCGCCCT CCCAAGGTCG CCAAGACCTC CGCCAAGGCC TCCCCCGCCA 237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAGCCCCG CGGGCGCCCT CCCAAGGTCG CCAAGACCTC CGCCAAGGCC TCCCCCGCCA 244 AGGCAGCCAA GAAGGCGGCT GCTCCTGCCA AGAAGNNNNN NNNNNNNNNN NNNNNNNNNN 177 |||||||||| |||| ||||| |||||||||| || AGGCAGCCAA GAAGCCGGCT GCTCCTGCCA AG........ .......... .......... 276 NNNNNNNNNN NNNNNNNNNN NNNNNGCAAT CTATCTCGCC AAGAAGGGAA AGGCAGCGGC 117 ||||||| |||||||||| .......... .......... .......... .......... ...AAGGGAA AGGCAGCGGC 293 GGCTCCTAAG AAGGTGGCAA CCCCGAAGAA GGCTGCTGCT GCTGCCGCCC CGGCCAGGAA 57 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTCCTAAG AAGGTGGCAA CCCCGAAGAA GGCTGCTGCT GCTGCCGCCC CGGCCAGGAA 353 GGGCGTGGCC AGGAAGGCCA AGAAGTAGTC TGCCTGCCTT GCTCGCTGGC GAGATC 1 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||| GGGCGTGGCC AGGAAGGCCA AGAAGTAGTC TGCCTGCCTT G-TCGCTGGC GAGATC 408 hqPGS_1006078B06YNX-_5757399- (476 205,133 1) ******************************************************************************** EST sequence 2 -strand (File: 5936795-) 1 CGAGGGTGAA GAACTCCTTC AAGCTGCCGG CCNCCGACGC CAAGCCCAAG GCCGCCAAGC 61 CCAAGGCACC CAAGGCCGCG CCCAAGCCCA AGCCCTCGCC GAAGGCGAAG GCCAAGACCG 121 CTGCGAAGCC CAAGGCGGCG TCGCCCAAGC CCAAGGCCAA GGCCAAGGCC AAGGCCAAGC 181 CTGTCGCTCC TGCCGCCGCG TCGCCCAAGC CCCGCGGGCG CCCTCCCAAG GTCGCCAAGA 241 CCTCCGCCAA GGCCTCCCCC GCCAAGGCAG CCAAGAAGGC GGCTGCTCCT GCCAAGAAGG 301 GAAAGGCAGC GGCGGCTCCT AAGAAGGTGG CAACCCCGAA GAAGGCTGCT GCTGCTGCCG 361 CTCCGGTCAG GAAGGGCGTG GCCAGGAAGG CCAAGAAGTA GTCTGCCCGC CTTGTCGCTG 421 GCGAGATCCC CCCCTCAATT CCGCCTATAG ATTCCCCTCT TTCATGGATT TTGATCCAAT 481 CGTAATATTG TCAGTAGCTC TAGATTCGTC GGTAGCTCCA GCATGAGTGT CGGTGGTAGT 541 TCTGTGCCTG TAAAAACTTG GGATGGTTGA TCGCGTGTGA TCAGCCGTCA TGCTCCTCCA 601 GTCTCTATGA CAAGCTTAAG CTATAAATAA TATTTTGCTA AAAA Predicted gene structure (within gDNA segment 476 to 1): Exon 1 476 205 ( 272 n); cDNA 19 296 ( 278 n); score: 0.938 Intron 1 204 134 ( 71 n); Pd: 0.000 (s: 1.00), Pa: 0.902 (s: 1.00) Exon 2 133 1 ( 133 n); cDNA 297 428 ( 132 n); score: 0.970 MATCH 1006078B06YNX- 5936795- 0.948 405 0.851 G PGS_1006078B06YNX-_5936795- (476 205,133 1) Alignment (genomic DNA sequence = upper lines): TCAAGCTGCG GGCCACCGAC GCCAAGCCCA AGGCCGCCAA GCCCAAGGCA CCCAAGGCGG 417 ||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||| | TCAAGCTGCC GGCCNCCGAC GCCAAGCCCA AGGCCGCCAA GCCCAAGGCA CCCAAGGCCG 78 CGCCCAAGCC CAAGCCCTCG CCGAAGGCGA AGGCCAAGCC CGCTGCGAAG CCCAAGGCGG 357 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| CGCCCAAGCC CAAGCCCTCG CCGAAGGCGA AGGCCAAGAC CGCTGCGAAG CCCAAGGCGG 138 CGTCGCCCAA ACCCAAGGCC AAGGCCAAGG CCAA-G-C-- G--TGTCGCT CCTGCCGCCG 303 |||||||||| ||||||||| |||||||||| |||| | | | ||||||| |||||||||| CGTCGCCCAA GCCCAAGGCC AAGGCCAAGG CCAAGGCCAA GCCTGTCGCT CCTGCCGCCG 198 CGTCGCCCAA GCCCCGCGGG CGCCCTCCCA AGGTCGCCAA GACCTCCGCC AAGGCCTCCC 243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCGCCCAA GCCCCGCGGG CGCCCTCCCA AGGTCGCCAA GACCTCCGCC AAGGCCTCCC 258 CCGCCAAGGC AGCCAAGAAG GCGGCTGCTC CTGCCAAGAA GNNNNNNNNN NNNNNNNNNN 183 |||||||||| |||||||||| |||||||||| |||||||| CCGCCAAGGC AGCCAAGAAG GCGGCTGCTC CTGCCAAG.. .......... .......... 296 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NGCAATCTAT CTCGCCAAGA AGGGAAAGGC 123 | |||||||||| .......... .......... .......... .......... .........A AGGGAAAGGC 307 AGCGGCGGCT CCTAAGAAGG TGGCAACCCC GAAGAAGGCT GCTGCTGCTG CCGCCCCGGC 63 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| |||| AGCGGCGGCT CCTAAGAAGG TGGCAACCCC GAAGAAGGCT GCTGCTGCTG CCGCTCCGGT 367 CAGGAAGGGC GTGGCCAGGA AGGCCAAGAA GTAGTCTGCC TGCCTTGCTC GCTGGCGAGA 3 |||||||||| |||||||||| |||||||||| |||||||||| |||||| || |||||||||| CAGGAAGGGC GTGGCCAGGA AGGCCAAGAA GTAGTCTGCC CGCCTTG-TC GCTGGCGAGA 426 TC 1 || TC 428 hqPGS_1006078B06YNX-_5936795- (476 205,133 1) ******************************************************************************** EST sequence 4 +strand (File: 409594+) 1 CNCCCTCCCA AGGTCGCCAA GACTCCGCCA AGGCCTCCCC CGCCAAGGCA GCCAAGAAGG 61 CGCTNNTCCT GCCAAGAAGG GAAAGGCAGC GGCGGCTCCT AAGAAGGTGG CAACCCCGAA 121 GAAGGCTGCT GCTGCTGNNN CCCNNNCAGG AAGGGCGTGG CAGGAA Predicted gene structure (within gDNA segment 476 to 1): Exon 1 280 205 ( 76 n); cDNA 3 76 ( 74 n); score: 0.947 Intron 1 204 134 ( 71 n); Pd: 0.000 (s: 0.94), Pa: 0.902 (s: 1.00) Exon 2 133 42 ( 92 n); cDNA 77 166 ( 90 n); score: 0.913 MATCH 1006078B06YNX- 409594+ 0.929 168 1.012 C PGS_1006078B06YNX-_409594+ (280 205,133 42) Alignment (genomic DNA sequence = upper lines): CCCTCCCAAG GTCGCCAAGA CCTCCGCCAA GGCCTCCCCC GCCAAGGCAG CCAAGAAGGC 221 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CCCTCCCAAG GTCGCCAAGA -CTCCGCCAA GGCCTCCCCC GCCAAGGCAG CCAAGAAGGC 61 GGCTGCTCCT GCCAAGAAGN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 161 ||| |||| |||||| -GCTNNTCCT GCCAAG.... .......... .......... .......... .......... 76 NNNNNNNNNG CAATCTATCT CGCCAAGAAG GGAAAGGCAG CGGCGGCTCC TAAGAAGGTG 101 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......AAG GGAAAGGCAG CGGCGGCTCC TAAGAAGGTG 109 GCAACCCCGA AGAAGGCTGC TGCTGCTGCC GCCCCGGCCA GGAAGGGCGT GGCCAGGAA 42 |||||||||| |||||||||| |||||||| ||| || |||||||||| || |||||| GCAACCCCGA AGAAGGCTGC TGCTGCTG-N NNCCCNNNCA GGAAGGGCGT GG-CAGGAA 166 hqPGS_1006078B06YNX-_409594+ (280 205,133 42) ******************************************************************************** EST sequence 3 +strand (File: 6021436+) 1 ATTCGGCACG AGGAGAGGGT TGGGGAGAGT AGTAGTGATC CGCAATGTCG ACGGAGGAGG 61 CTGTTGTGGC TGAGGTCCCG GTGACCGAGG TGCCAGCGGA GGTCCCGGCG GCCCAGGTGG 121 CCGAGGCGCC CAAGGCGAAG AAGGCGCCCA AGGAGAAGAA GGCGCCTAAG GAGAAGAAGC 181 CGTCCGCGGC GAAGAAGCCG GCGGCGCACC CTCCCTATGC TGAGATGATT GTAGAGGCGA 241 TCGCTGCCCT CAAGGAGAGG AAGGGGTCGA GCTCGGTGGC CATCAGCAAG TACGTCGAGG 301 GGAAGCACGG CGGCAAGCTC CCCACCAACT TCCGCAAGCA GCTCACCGTG CAGCTGAAGA 361 AGCTCGCTGC CGCCGGTAAG CTGACGAGGG TGAAGAACTC CTTCAAGCTG CCGGCCACCG 421 ACGCCAAGCC CAAGGCCGCC AAGCCCAAGG CACCCAAGGC CGCGCCCAAG CCCAAGCCCT 481 CGCCGAAGGC GAAGGCCAAG ACCGCTGCGA AGCCCAAGGC GGCGTCGCCC AAGCCCAAGG 541 CCAAGGCCAA GGCCAAGGCC AAGCCTGTCG CTCCTGCCGN CGCGTCGCCC AAGCCCCGCG 601 GGCGCCCTCC AAGGTCGCCA AGAC Predicted gene structure (within gDNA segment 476 to 1): Exon 1 476 260 ( 217 n); cDNA 403 624 ( 222 n); score: 0.917 MATCH 1006078B06YNX- 6021436+ 0.917 217 0.456 G PGS_1006078B06YNX-_6021436+ (476 260) Alignment (genomic DNA sequence = upper lines): TCAAGCTGCG GGCCACCGAC GCCAAGCCCA AGGCCGCCAA GCCCAAGGCA CCCAAGGCGG 417 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | TCAAGCTGCC GGCCACCGAC GCCAAGCCCA AGGCCGCCAA GCCCAAGGCA CCCAAGGCCG 462 CGCCCAAGCC CAAGCCCTCG CCGAAGGCGA AGGCCAAGCC CGCTGCGAAG CCCAAGGCGG 357 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| CGCCCAAGCC CAAGCCCTCG CCGAAGGCGA AGGCCAAGAC CGCTGCGAAG CCCAAGGCGG 522 CGTCGCCCAA ACCCAAGGCC AAGGCCAAGG CCAA-G-C-- G--TGTCGCT CCTGCCGCCG 303 |||||||||| ||||||||| |||||||||| |||| | | | ||||||| ||||||| || CGTCGCCCAA GCCCAAGGCC AAGGCCAAGG CCAAGGCCAA GCCTGTCGCT CCTGCCGNCG 582 CGTCGCCCAA GCCCCGCGGG CGCCCTCCCA AGGTCGCCAA GAC 260 |||||||||| |||||||||| |||||| ||| |||||||||| ||| CGTCGCCCAA GCCCCGCGGG CGCCCT-CCA AGGTCGCCAA GAC 624 hqPGS_1006078B06YNX-_6021436+ (476 260) Total number of EST alignments reported: 4 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 476: PGL 1 (- strand): 476 1 AGS-1 (476 205,133 1) SCR (e 0.960 d 0.000 a 0.902,e 0.992) Exon 1 476 205 ( 272 n); score: 0.960 Intron 1 204 134 ( 71 n); Pd: 0.000 Pa: 0.902 Exon 2 133 1 ( 133 n); score: 0.992 PGS (476 205,133 1) 5757399- PGS (476 205,133 1) 5936795- PGS (280 205,133 42) 409594+ PGS (476 260) 6021436+ 3-phase translation of AGS-1 (-strand): . . . . . . 476 TCAAGCTGCGGGCCACCGACGCCAAGCCCAAGGCCGCCAAGCCCAAGGCACCCAAGGCGG S S C G P P T P S P R P P S P R H P R R Q A A G H R R Q A Q G R Q A Q G T Q G G K L R A T D A K P K A A K P K A P K A . . . . . . 416 CGCCCAAGCCCAAGCCCTCGCCGAAGGCGAAGGCCAAGCCCGCTGCGAAGCCCAAGGCGG R P S P S P R R R R R P S P L R S P R R A Q A Q A L A E G E G Q A R C E A Q G G A P K P K P S P K A K A K P A A K P K A . . . . . . 356 CGTCGCCCAAACCCAAGGCCAAGGCCAAGGCCAAGCGTGTCGCTCCTGCCGCCGCGTCGC R R P N P R P R P R P S V S L L P P R R V A Q T Q G Q G Q G Q A C R S C R R V A A S P K P K A K A K A K R V A P A A A S . . . . . . 296 CCAAGCCCCGCGGGCGCCCTCCCAAGGTCGCCAAGACCTCCGCCAAGGCCTCCCCCGCCA P S P A G A L P R S P R P P P R P P P P Q A P R A P S Q G R Q D L R Q G L P R Q P K P R G R P P K V A K T S A K A S P A . . . . : . . 236 AGGCAGCCAAGAAGGCGGCTGCTCCTGCCAAG : AAGGGAAAGGCAGCGGCGGCTCCTAAGA R Q P R R R L L L P R : R E R Q R R L L R G S Q E G G C S C Q : E G K G S G G S - E K A A K K A A A P A K : K G K A A A A P K . . . . . . 105 AGGTGGCAACCCCGAAGAAGGCTGCTGCTGCTGCCGCCCCGGCCAGGAAGGGCGTGGCCA R W Q P R R R L L L L P P R P G R A W P G G N P E E G C C C C R P G Q E G R G Q K V A T P K K A A A A A A P A R K G V A . . . . . 45 GGAAGGCCAAGAAGTAGTCTGCCTGCCTTGCTCGCTGGCGAGATC G R P R S S L P A L L A G E I E G Q E V V C L P C S L A R R K A K K - S A C L A R W R D Maximal non-overlapping open reading frames (>= 64 codons): >1006078B06YNX-_PGL-1_AGS-1_PPS_1 (476 205,133 1) (frame '1'; 405 bp, 135 residues) 1 SSCGPPTPSP RPPSPRHPRR RPSPSPRRRR RPSPLRSPRR RRPNPRPRPR PSVSLLPPRR 61 PSPAGALPRS PRPPPRPPPP RQPRRRLLLP RRERQRRLLR RWQPRRRLLL LPPRPGRAWP 121 GRPRSSLPAL LAGEI ... finished at: Mon Nov 10 17:48:33 2003 ________________________________________________________________________________ Sequence 6: 1006078D07YNX, from 1 to 889, both strands analyzed. ... started at: Mon Nov 10 17:48:33 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:33 2003 ________________________________________________________________________________ Sequence 7: 1006081H12YNX, from 1 to 897, both strands analyzed. ... started at: Mon Nov 10 17:48:33 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:33 2003 ________________________________________________________________________________ Sequence 8: 1006085G09YNX, from 1 to 554, both strands analyzed. ... started at: Mon Nov 10 17:48:33 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: 5030702-) 1 ACCTTCGGCT CCATCGGCAA GCAGGTGTGG TACGACAGGG AGGTGACGGC GTTCGTGGAG 61 CCCGGGCGGA TGCACGGCCT CGCCGGGGTG AAGAGCAAGG AGCTCCTCAT CTGGGTCACC 121 ATCTCCGAGA TCGTCCTCAG CCCCTCCGGC ACCAAGATCG TGTTCCGCAC CCCCGCGGGG 181 CTCGGCCGCG CCTTCCCTGT CCCCGCCTTC CAGCTCGAGC CCGCGGCGGC GGAGGGGGAC 241 CCCAAGGAGG AGGCCGAGGA CGCCGCCGCC GCCGCCGCCA ACTGATCTGC TCTAGCTTCC 301 GGCGGCGGCG GCCGTGCGTG GGCTGCTCGA TCCGGTAGTG GCAGTGGCTT TGTGAGACAG 361 TCGAGTCGAT TGTGGTTTCC CCTCCTCCGC CATGTGCGTG TAGTGGATGA TGATGCAGGA 421 ATAAACGGTG TCCCTGGATC CAGAACTCAC GGTTCGATCC ATCCAGTTTA TCTCATGCTT 481 GTGTATCTCT NATGTATGCA TTGCCTGTTT GTTCGCTGGA AAAAAAAAAA AAAAAAAAAA 541 AAAA Predicted gene structure (within gDNA segment 381 to 1): Exon 1 76 1 ( 76 n); cDNA 1 76 ( 76 n); score: 0.987 PPA cDNA 520 544 MATCH 1006085G09YNX- 5030702- 0.987 76 0.199 G PGS_1006085G09YNX-_5030702- (76 1) Alignment (genomic DNA sequence = upper lines): ACCTTCGGCT CCATCGGCAA GCAGGTGTGG TACGACAGGG AGGTGACGGC GTTCGTGGAG 17 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTCGGCT CCATCGGCAA GCAGGTGTGG TACGACAGGG AGGTGACGGC GTTCGTGGAG 60 CCGGGGCGGA TGCACG 1 || ||||||| |||||| CCCGGGCGGA TGCACG 76 hqPGS_1006085G09YNX-_5030702- (76 1) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 554: PGL 1 (- strand): 76 1 AGS-1 (76 1) SCR (e 0.987) Exon 1 76 1 ( 76 n); score: 0.987 PGS (76 1) 5030702- 3-phase translation of AGS-1 (-strand): . . . . . . 76 ACCTTCGGCTCCATCGGCAAGCAGGTGTGGTACGACAGGGAGGTGACGGCGTTCGTGGAG T F G S I G K Q V W Y D R E V T A F V E P S A P S A S R C G T T G R - R R S W S L R L H R Q A G V V R Q G G D G V R G . . 16 CCGGGGCGGATGCACG P G R M H R G G C T A G A D A Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 1 CGTGCATCCGCCCCGGCTCCACGAACGCCGTCACCTCCCTGTCGTACCACACCTGCTTGC R A S A P A P R T P S P P C R T T P A C V H P P R L H E R R H L P V V P H L L A C I R P G S T N A V T S L S Y H T C L . . 61 CGATGGAGCCGAAGGT R W S R R D G A E G P M E P K Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:33 2003 ________________________________________________________________________________ Sequence 9: 1006090F05YNX, from 1 to 780, both strands analyzed. ... started at: Mon Nov 10 17:48:33 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:34 2003 ________________________________________________________________________________ Sequence 10: 1006091D11YNX, from 1 to 932, both strands analyzed. ... started at: Mon Nov 10 17:48:34 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:34 2003 ________________________________________________________________________________ Sequence 11: 1006094A01YNX, from 1 to 938, both strands analyzed. ... started at: Mon Nov 10 17:48:34 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 2 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: 5030786-) 1 GCAAACTGGA CGAGGCGGCG GTGCAGCGCT TCTGCCAGGA GGTCGGCGTG AAGCGGCGCG 61 TGCTCAAGGT GTGGATGCAC AACAACAAGC ACACCCTGGC GCGGCGCGGC CACGCCGGGC 121 TCCCCGGCGA CCCGGAGCTG CTGGGGCCGC ACGACGGCCA GCTCGGCATG CCGCTCCCGG 181 AGCCGGCGGC GGAGCCCGCA GCTGCTGCTG CGGCTGGACT TGGAGTGACC GACCAAGCCA 241 TGTCTTTCGG GACTGGACGA CATTGATCAA CAGAGTCTAA TGCTGACTGA ATCAGCCTTG 301 CGGCATAGGG AAGCTGTTTT CTTTGTTAAT CTGCTGCTGA TCTCATCAAT CTAGCCGTAG 361 CTTTAGCTGC ATTTGCATTC CACTGTTCCA TCCATCCATC CATCCATCCT AGCTATCCAT 421 CAACCACAAA CTGATGATGC GGAGTCTCCA TGGATTTCTA TTCCTTGTTG ATTTCTGTAG 481 CTGCTCTCCC CGCTCTTGAC TTTAATTTTT TAGTGCTCGA GTGACTGGTG G Predicted gene structure (within gDNA segment 938 to 1): Exon 1 933 869 ( 65 n); cDNA 33 97 ( 65 n); score: 0.908 MATCH 1006094A01YNX- 5030786- 0.908 65 0.122 C PGS_1006094A01YNX-_5030786- (933 869) Alignment (genomic DNA sequence = upper lines): TGCGACGAGG TCTGCGTCAA GCGCCACGTG CTCAAGGTGT GGATGCACAA CAACAAGCAC 874 ||| | |||| || |||| || ||| | |||| |||||||||| |||||||||| |||||||||| TGCCAGGAGG TCGGCGTGAA GCGGCGCGTG CTCAAGGTGT GGATGCACAA CAACAAGCAC 92 ACCCT 869 ||||| ACCCT 97 hqPGS_1006094A01YNX-_5030786- (933 869) ******************************************************************************** EST sequence 2 -strand (File: 12969228-) 1 GGGTGGCGGC TGCAGAAGCT GGACGAGGCG GCGGTGCAGC GCTTCTGCCA GGAGGTCGGC 61 GTGAAGCGGC GCGTGCTCAA GGTGTGGATG CACAACAACA AGCACACCCT GGCGCGGCGC 121 GGCCACGCCG GGCTCCCCGG CGACCCGGAG CTGCTGGGGC CGCACGACGG CCAGCTCGGC 181 ATGCCGCTCC CGGAGCCGGC GGCGGAGCCC GCAGCTGCTG CTGCGGCTGG ACTTGGAGTG 241 ACCGACCAAG CCATGTCTTT CGGGACTGGA CGACATTGAT CAACAGAGTC TAATGCTGAC 301 TGAATCAGCC TTGCGGCATA GGGAAGCTGT TTTCTTTGTT AATCTGCTGC TGATCTCATC 361 AATCTAGCCG TAGCTTTAGC TGCATTTGCA TTCCACTGTT CCATCAAAAA ATACATCCAT 421 CCTAGCTATC CATCAACCAC AAACTGATGA TGCGGAGTCT CCATGGATTT CTATTCCTTG 481 TTGATTTCTG TAGCTGCTCT CCCCGCTCTT GACTTTAATT TTTTAGTGCT CGAGTGACTG 541 GTGGTTTGGG AGATGAGACT GAAAAAAAAA AAAAAAAAAA CTC Predicted gene structure (within gDNA segment 938 to 1): Exon 1 933 869 ( 65 n); cDNA 46 110 ( 65 n); score: 0.908 PPA cDNA 562 581 MATCH 1006094A01YNX- 12969228- 0.908 65 0.111 C PGS_1006094A01YNX-_12969228- (933 869) Alignment (genomic DNA sequence = upper lines): TGCGACGAGG TCTGCGTCAA GCGCCACGTG CTCAAGGTGT GGATGCACAA CAACAAGCAC 874 ||| | |||| || |||| || ||| | |||| |||||||||| |||||||||| |||||||||| TGCCAGGAGG TCGGCGTGAA GCGGCGCGTG CTCAAGGTGT GGATGCACAA CAACAAGCAC 105 ACCCT 869 ||||| ACCCT 110 hqPGS_1006094A01YNX-_12969228- (933 869) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 938: PGL 1 (- strand): 933 869 AGS-1 (933 869) SCR (e 0.908) Exon 1 933 869 ( 65 n); score: 0.908 PGS (933 869) 5030786- PGS (933 869) 12969228- 3-phase translation of AGS-1 (-strand): . . . . . . 933 TGCGACGAGGTCTGCGTCAAGCGCCACGTGCTCAAGGTGTGGATGCACAACAACAAGCAC C D E V C V K R H V L K V W M H N N K H A T R S A S S A T C S R C G C T T T S T R R G L R Q A P R A Q G V D A Q Q Q A . 873 ACCCT T P H P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 869 AGGGTGTGCTTGTTGTTGTGCATCCACACCTTGAGCACGTGGCGCTTGACGCAGACCTCG R V C L L L C I H T L S T W R L T Q T S G C A C C C A S T P - A R G A - R R P R G V L V V V H P H L E H V A L D A D L . 929 TCGCA S R V A Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:35 2003 ________________________________________________________________________________ Sequence 12: 1006095B03YNX, from 1 to 589, both strands analyzed. ... started at: Mon Nov 10 17:48:35 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:35 2003 ________________________________________________________________________________ Sequence 13: 1006101H05YNX, from 1 to 855, both strands analyzed. ... started at: Mon Nov 10 17:48:35 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 5439466+) 1 TGACGGCGCA GGCTGCGGAG GAGCTCGCCG CCCAGATCGA GCAGCAGAAG CTCGAGGAGC 61 AGAAGACCGA GGCAGAAGAG GTTGCGGTGG AGGAGGATGA CGAGGATGAT GAGGATGACG 121 ATGATGATGA CAAGGATGAT GATGAACTGG ATGGACAAGA AGGGGATGGG AGTGGCAAGT 181 CGAAGCAAAG CAGGAGTGAG AAGAAGAGCC GCAAGGCCAT GCTGAAGCTT GGCATGAAGC 241 CCATCACTGG TGTCAGCCGG GTCACTGTGA AGAAAAGCAA GAATATGCTT TTTGTCATCT 301 CGAAGCCAGA TGTGTTCAAG AGCCCAAACT CGGACACCTA AGTCATATTC GGCGAGGCGA 361 AGATCGAGGA CCTCAGCTCC CAGCTGCAGA CCCAAGCTGC AGAGCAGTTC AAGGCTCCTG 421 ACCTGAGCCA AATGATCCCG AAGCCTGAGA CATCTGGCCT GGGCCTGGAG GACAACGAGG 481 AGGAGGAGGT TGACGAAACT GGTGTCGAGG CCAAGGATGT CGAGCCTGGT GATGACTCAG 541 GCATCTGTTT CGAGGCCCAG GGCGGTCAAG G Predicted gene structure (within gDNA segment 429 to 855): Exon 1 788 855 ( 68 n); cDNA 4 71 ( 68 n); score: 0.882 MATCH 1006101H05YNX+ 5439466+ 0.882 68 0.159 G PGS_1006101H05YNX+_5439466+ (788 855) Alignment (genomic DNA sequence = upper lines): CGTCGCAACC CGCGGAGGAG CTCGCCACCC AGATCGAGCA GCAGAAGGGC GATGAGCAGA 847 || |||| | ||||||||| |||||| ||| |||||||||| ||||||| | || ||||||| CGGCGCAGGC TGCGGAGGAG CTCGCCGCCC AGATCGAGCA GCAGAAGCTC GAGGAGCAGA 63 AGACCGAG 855 |||||||| AGACCGAG 71 hqPGS_1006101H05YNX+_5439466+ (788 855) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 855: PGL 1 (+ strand): 788 855 AGS-1 (788 855) SCR (e 0.882) Exon 1 788 855 ( 68 n); score: 0.882 PGS (788 855) 5439466+ 3-phase translation of AGS-1 (+strand): . . . . . . 788 CGTCGCAACCCGCGGAGGAGCTCGCCACCCAGATCGAGCAGCAGAAGGGCGATGAGCAGA R R N P R R S S P P R S S S R R A M S R V A T R G G A R H P D R A A E G R - A E S Q P A E E L A T Q I E Q Q K G D E Q . 848 AGACCGAG R P D R K T E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 855 CTCGGTCTTCTGCTCATCGCCCTTCTGCTGCTCGATCTGGGTGGCGAGCTCCTCCGCGGG L G L L L I A L L L L D L G G E L L R G S V F C S S P F C C S I W V A S S S A G R S S A H R P S A A R S G W R A P P R . 795 TTGCGACG L R C D V A T Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:36 2003 ________________________________________________________________________________ Sequence 14: 1006102E03YNX, from 1 to 825, both strands analyzed. ... started at: Mon Nov 10 17:48:36 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 474252+) 1 CTGGGCCGCC GCGCCGCCCT AAGCCACGTG CTGAGGCTTT CGTTGGTCTC TTCGCCGGCG 61 ACGAGCACCC AGCAGTTCTG TAGAAATGGC TGATGGTGAG GACATCCAGC CTCTTGTCTG 121 CGACAATGGC ACTGGAATGG TCAAGGCTGG TTTTGCTGGC GATGATGCAC CAAGGGCGGT 181 TTT Predicted gene structure (within gDNA segment 825 to 268): Exon 1 790 718 ( 73 n); cDNA 73 145 ( 73 n); score: 0.973 Intron 1 717 635 ( 83 n); Pd: 1.000 (s: 0.96), Pa: 0.995 (s: 0) Exon 2 634 597 ( 38 n); cDNA 146 183 ( 38 n); score: 0.921 MATCH 1006102E03YNX- 474252+ 0.973 111 0.607 C PGS_1006102E03YNX-_474252+ (790 718,634 597) Alignment (genomic DNA sequence = upper lines): CAGTTCTGTA GAAATGGCTG ATGGTGAGGA CATCCAGCCT CTTGTCTGCG ACAATGGAAC 731 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || CAGTTCTGTA GAAATGGCTG ATGGTGAGGA CATCCAGCCT CTTGTCTGCG ACAATGGCAC 132 CGGAATGGTC AAGGTCAGTG CTTTCCCCCC TTAATTTGTA CAGCCATAGT CTCCCCCACC 671 ||||||||| ||| TGGAATGGTC AAG....... .......... .......... .......... .......... 145 CAAATATGCC ACTAATTATG TGTATCTATC TTCTAGGCTG GTTTTGCCGG CGATGATGCA 611 |||| ||||||| || |||||||||| .......... .......... .......... ......GCTG GTTTTGCTGG CGATGATGCA 169 CCAAGGGCTG TATT 597 |||||||| | | || CCAAGGGCGG TTTT 183 hqPGS_1006102E03YNX-_474252+ (790 718,634 597) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 825: PGL 1 (- strand): 790 597 AGS-1 (790 718,634 597) SCR (e 0.973 d 1.000 a 0.995,e 0.921) Exon 1 790 718 ( 73 n); score: 0.973 Intron 1 717 635 ( 83 n); Pd: 1.000 Pa: 0.995 Exon 2 634 597 ( 38 n); score: 0.921 PGS (790 718,634 597) 474252+ 3-phase translation of AGS-1 (-strand): . . . . . . 790 CAGTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGAAC Q F C R N G - W - G H P A S C L R Q W N S S V E M A D G E D I Q P L V C D N G T V L - K W L M V R T S S L L S A T M E . . : . . . . 730 CGGAATGGTCAAG : GCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATT R N G Q : G W F C R R - C T K G C I G M V K : A G F A G D D A P R A V P E W S R : L V L P A M M H Q G L Y Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:36 2003 ________________________________________________________________________________ Sequence 15: 1006107C06YNX, from 1 to 980, both strands analyzed. ... started at: Mon Nov 10 17:48:36 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 13198608+) 1 ACTACTCCTC GGATAGCCAC GGCAGCAGCA GCAGCCATGG CTTGCTCCGC GCACCTTGTG 61 TCCCAGAGCC TCTACTCGTC CCACCGCGCC AGCCCGGGCG GGCCTAGGAA TCTCCGTTCC 121 CAGGGCCGAC CGCCGGCGCG GGCGTCTCCC TCTGCGAGGC CTGGCTCAAG GGTCAGTGGC 181 TGCCGGGGTG TCAGCCTGAG AGTCGCCGCG TCGTTCGAGC AGGGAAGGAG GCAAGTGGAG 241 GTCTCTTATG ACCCACAAGC GAGGTTTAAC CAGATAGCAG ACCAAATTGA CAAGGATGCT 301 GGGATGACAC GGCTTAACCT ATTCTCACCT TGCAAAATTA ATGTGTTCTT GAGGATAACG 361 GGCAAGAGAC CAGATGGGTT CCATGACCTG GCTTCTCTAT TTCATGTCAT AAGTTTGGGT 421 GATACTATCA AATTCTCATT GTCACCAAGT AAAAGTAGAG ATCGCCTGTC AACCAAT Predicted gene structure (within gDNA segment 1 to 980): Exon 1 1 95 ( 95 n); cDNA 146 240 ( 95 n); score: 0.989 MATCH 1006107C06YNX+ 13198608+ 0.989 95 0.199 C PGS_1006107C06YNX+_13198608+ (1 95) Alignment (genomic DNA sequence = upper lines): CTCCCTCTGC GAGGCCTGGC TCGAGGGTCA GTGGCTGCCG GGGTGTCAGC CTGAGAGTCG 60 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| CTCCCTCTGC GAGGCCTGGC TCAAGGGTCA GTGGCTGCCG GGGTGTCAGC CTGAGAGTCG 205 CCGCGTCGTT CGAGCAGGGA AGGAGGCAAG TGGAG 95 |||||||||| |||||||||| |||||||||| ||||| CCGCGTCGTT CGAGCAGGGA AGGAGGCAAG TGGAG 240 hqPGS_1006107C06YNX+_13198608+ (1 95) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 980: PGL 1 (+ strand): 1 95 AGS-1 (1 95) SCR (e 0.989) Exon 1 1 95 ( 95 n); score: 0.989 PGS (1 95) 13198608+ 3-phase translation of AGS-1 (+strand): . . . . . . 1 CTCCCTCTGCGAGGCCTGGCTCGAGGGTCAGTGGCTGCCGGGGTGTCAGCCTGAGAGTCG L P L R G L A R G S V A A G V S A - E S S L C E A W L E G Q W L P G C Q P E S R P S A R P G S R V S G C R G V S L R V . . . . 61 CCGCGTCGTTCGAGCAGGGAAGGAGGCAAGTGGAG P R R S S R E G G K W R V V R A G K E A S G A A S F E Q G R R Q V E Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 95 CTCCACTTGCCTCCTTCCCTGCTCGAACGACGCGGCGACTCTCAGGCTGACACCCCGGCA L H L P P S L L E R R G D S Q A D T P A S T C L L P C S N D A A T L R L T P R Q P L A S F P A R T T R R L S G - H P G . . . . 35 GCCACTGACCCTCGAGCCAGGCCTCGCAGAGGGAG A T D P R A R P R R G P L T L E P G L A E G S H - P S S Q A S Q R E Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:37 2003 ________________________________________________________________________________ Sequence 16: 1006109A02YNX, from 1 to 926, both strands analyzed. ... started at: Mon Nov 10 17:48:37 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:37 2003 ________________________________________________________________________________ Sequence 17: 1006116H11YNX, from 1 to 771, both strands analyzed. ... started at: Mon Nov 10 17:48:37 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 5455745+) 1 AAACTTGAAA AAGTTTATAT AGCCGACAAA TTAAACACTC GACAACTGGT TACACTTGCA 61 GACAAACAAC CGAGCAAAAA ATCAAACAAC AAAAGTATGA AGCATATCGG GATGGGATGG 121 GATGCGATGC GATGCAATGC AATGCAATGC AAGGGCCCCT TGTGATTTGG ATTTGGCGCC 181 CCAGATTTAC TCCCGGATCA CATGACGATC TCGGGCTTGA GGATGCTGGA TTTGATCTCC 241 TTGTGCGGGA GCACGACGCC GCCGTTGCTG TAGATCTCGT CGCAGACGTG GACGTCCTCG 301 CCGAGGATGG TCATGTTCTC GACGCGCGCC CACTTGCCGA CGGTGGAGTG CCAGCCGATG 361 ATGCTGCTGG AGACGCAGGC GTGCTGCTTG ACGCGCGCGG CGCGCATGAC GGTGCAGCGG 421 GACAGGCGCA CCCCGGCCTC CACCACGCAG CCTGGCCCGA CCGCGACGTC GGGCCCGATG 481 AGGCAGCCGT CCCCGATGAC CGCGGTCTCG TGCACCAGCA CGTTGCCCAG GACGTGCGCG 541 CCCGACGCGA GCCTGGCCTC GTGCCGAATT Predicted gene structure (within gDNA segment 771 to 60): Exon 1 771 544 ( 228 n); cDNA 294 521 ( 228 n); score: 0.978 Intron 1 543 466 ( 78 n); Pd: 0.956 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 465 432 ( 34 n); cDNA 522 555 ( 34 n); score: 1.000 MATCH 1006116H11YNX- 5455745+ 0.978 262 0.460 C PGS_1006116H11YNX-_5455745+ (771 544,465 432) Alignment (genomic DNA sequence = upper lines): GTCCTCGCCG AGGATGGTCA TGTTCTCGTC GCGTGCCTAC TATCCGACGG TGGAGTGCCA 712 |||||||||| |||||||||| |||||||| | ||| ||| || | ||||||| |||||||||| GTCCTCGCCG AGGATGGTCA TGTTCTCGAC GCGCGCCCAC TTGCCGACGG TGGAGTGCCA 353 GCCGATGATG CTGCTGGAGA CGCAGGCGTG CTGCTTGACG CGCGCGGCGC GCATGACGGT 652 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGATGATG CTGCTGGAGA CGCAGGCGTG CTGCTTGACG CGCGCGGCGC GCATGACGGT 413 GCAGCGGGAC AGGCGCACCC CGGCCTCCAC CACGCAGCCT GGCCCGACCG CGACGTCGGG 592 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCGGGAC AGGCGCACCC CGGCCTCCAC CACGCAGCCT GGCCCGACCG CGACGTCGGG 473 CCCGATGAGG CAGCCGTCCC CGATGACCGC GGTCTCGTGC ACCAGCACGT TGCCCAGGAG 532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CCCGATGAGG CAGCCGTCCC CGATGACCGC GGTCTCGTGC ACCAGCAC.. .......... 521 AGATAATTGC CATTATGGNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 472 .......... .......... .......... .......... .......... .......... 521 NNNNNNNNTG CCCAGGACGT GCGCGCCCGA CGCGAGCCTG 432 || |||||||||| |||||||||| |||||||||| ......GTTG CCCAGGACGT GCGCGCCCGA CGCGAGCCTG 555 hqPGS_1006116H11YNX-_5455745+ (771 544,465 432) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 771: PGL 1 (- strand): 771 432 AGS-1 (771 544,465 432) SCR (e 0.978 d 0.956 a 0.000,e 1.000) Exon 1 771 544 ( 228 n); score: 0.978 Intron 1 543 466 ( 78 n); Pd: 0.956 Pa: 0.000 Exon 2 465 432 ( 34 n); score: 1.000 PGS (771 544,465 432) 5455745+ 3-phase translation of AGS-1 (-strand): . . . . . . 771 GTCCTCGCCGAGGATGGTCATGTTCTCGTCGCGTGCCTACTATCCGACGGTGGAGTGCCA V L A E D G H V L V A C L L S D G G V P S S P R M V M F S S R A Y Y P T V E C Q P R R G W S C S R R V P T I R R W S A . . . . . . 711 GCCGATGATGCTGCTGGAGACGCAGGCGTGCTGCTTGACGCGCGCGGCGCGCATGACGGT A D D A A G D A G V L L D A R G A H D G P M M L L E T Q A C C L T R A A R M T V S R - C C W R R R R A A - R A R R A - R . . . . . . 651 GCAGCGGGACAGGCGCACCCCGGCCTCCACCACGCAGCCTGGCCCGACCGCGACGTCGGG A A G Q A H P G L H H A A W P D R D V G Q R D R R T P A S T T Q P G P T A T S G C S G T G A P R P P P R S L A R P R R R . . . . . : . 591 CCCGATGAGGCAGCCGTCCCCGATGACCGCGGTCTCGTGCACCAGCAC : NNTGCCCAGGAC P D E A A V P D D R G L V H Q H : X A Q D P M R Q P S P M T A V S C T S X : X P R T A R - G S R P R - P R S R A P A : X C P G . . . 453 GTGCGCGCCCGACGCGAGCCTG V R A R R E P C A P D A S L R A R P T R A Maximal non-overlapping open reading frames (>= 64 codons): >1006116H11YNX-_PGL-1_AGS-1_PPS_2 (771 544,465 433) (frame '1'; 261 bp, 87 residues) 1 VLAEDGHVLV ACLLSDGGVP ADDAAGDAGV LLDARGAHDG AAGQAHPGLH HAAWPDRDVG 61 PDEAAVPDDR GLVHQHXAQD VRARREP >1006116H11YNX-_PGL-1_AGS-1_PPS_1 (770 544,465 432) (frame '2'; 261 bp, 87 residues) 1 SSPRMVMFSS RAYYPTVECQ PMMLLETQAC CLTRAARMTV QRDRRTPAST TQPGPTATSG 61 PMRQPSPMTA VSCTSXXPRT CAPDASL ... finished at: Mon Nov 10 17:48:38 2003 ________________________________________________________________________________ Sequence 18: 1006117D12YNX, from 1 to 679, both strands analyzed. ... started at: Mon Nov 10 17:48:38 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 3 ******************************************************************************** EST sequence 2 -strand (File: 5555585-) 1 AGGTGCGGCT CGAAGTCGGC GTCGAAGAGG ATGTTCTGCG GCTTCACGTC GCCGTGCACG 61 ACGCCGGACT GATGCAGGAA CGCAAGGCCG CGCGAGACGC CCAGCGCGAT GAGGTGCCTC 121 ATTGGCCAGT TGAGGATGTG CCCGTCCTGG TGTGACGCTT CCTGCAGCAA CGTGGCGAGG 181 TTGCCGTTGG GCATGTAGTC GTAGACCAGC AGCCGGACAT CCGGCGGAGG ACCGGCGTAG 241 TAGCCACGGA GCACAGTGAG GTTCCTGTGC TTCACTTTCC CGAGAGATTC AGCCTCTTTC 301 CTGAACGACC CTTCATCAAT CACCACGGCA CCATCAGCAG ACGTGGACGG AAGCCGCAGA 361 ATCGCTAGCA CGGTGCCGTC ACTGTAACAA GCCTTGAACA CGAGGCCATG GCGGCCTCGG 421 CTGAGCACGT TCTCCTCGTC AAACTGGCGG GTTGCCTCAA CAGTGTCGGC ATAAGTGATC 481 CTTGAGTTGA ACATAATCAG CTTCGGCTGG CTGACACCGT TCTCCGTGCT TGTGCCACTC 541 GACCCACTGC CGCGTCCCGG GCTGCGTCTC CTCTTCTTCA CACCATCACG GCTCTCGTCA Predicted gene structure (within gDNA segment 1 to 666): Exon 1 3 190 ( 188 n); cDNA 409 596 ( 188 n); score: 0.920 MATCH 1006117D12YNX+ 5555585- 0.920 188 0.313 C PGS_1006117D12YNX+_5555585- (3 190) Alignment (genomic DNA sequence = upper lines): TGGCGGCCTC GGCTGAGCAC GTTCTCCTCG TCGAACTGGC GGGTCGCCTC AACCGTGTCA 62 |||||||||| |||||||||| |||||||||| || ||||||| |||| ||||| ||| ||||| TGGCGGCCTC GGCTGAGCAC GTTCTCCTCG TCAAACTGGC GGGTTGCCTC AACAGTGTCG 468 GCGTAAGTGA TCCTGGAATT GAACATGATC AGCTTCGGCT GGCTGACGCC GTTCTCCGTG 122 || ||||||| |||| || || |||||| ||| |||||||||| ||||||| || |||||||||| GCATAAGTGA TCCTTGAGTT GAACATAATC AGCTTCGGCT GGCTGACACC GTTCTCCGTG 528 CTCGTGCCGC TCGACCCACT GCCGCGTCCT GGGCTGCGTC TTCTCTTCTT GACACCGTCA 182 || ||||| | |||||||||| ||||||||| |||||||||| | |||||||| ||||| ||| CTTGTGCCAC TCGACCCACT GCCGCGTCCC GGGCTGCGTC TCCTCTTCTT CACACCATCA 588 CGGCTCTC 190 |||||||| CGGCTCTC 596 hqPGS_1006117D12YNX+_5555585- (3 190) ******************************************************************************** EST sequence 1 -strand (File: 5268606-) 1 GGCTTCACGT CACCGTGCCG ACGCCGGACT GATGCAGAAN CCAAGCCCGC GCGAAACGCC 61 CAGCGCGATG AGGTGCCTCA TTGGCCAGTT GAGAATGTGC CCGTCCTGGT GTGACGCTTC 121 CTGCAGCAAC GTGGCGAGGT TGCCGTTGGG CATGTAGTCG TAGGCCAGCA GCCGGACATC 181 CGGCGGAGGA CCGGCGTAGT AGCCACGGAG CACAGTGAGG TTCCTGTGCT TCNCTTTCCC 241 GAGAGATTCA GCCTCTTTCC TGAACGACCC TTCATCAATC ACCACGGCAC CATCAGCAGA 301 CGTGGACGGA AGCCGCANAA TCGCTAGCAC GGTGCCGTCA CTGTAACAAG CCTTGAACAC 361 GAGGCCATGG CGGCCTCGGC TGAGCACGTT CTCCTCGTCA AACTGGCGGG TTGCCTCAAC 421 AGTGTCGGCA TAAGTGATCC TTGAGTTGAA CATAATCAGC TTCGGCTGGC TGACACCGTT 481 CTCCGTGCTT GTGCCACTCG ACCCTCTGCC GCGTCCCGGG CTGCGTCTCC TCTTCTTCA Predicted gene structure (within gDNA segment 1 to 679): Exon 1 3 172 ( 170 n); cDNA 368 537 ( 170 n); score: 0.918 MATCH 1006117D12YNX+ 5268606- 0.918 170 0.315 C PGS_1006117D12YNX+_5268606- (3 172) Alignment (genomic DNA sequence = upper lines): TGGCGGCCTC GGCTGAGCAC GTTCTCCTCG TCGAACTGGC GGGTCGCCTC AACCGTGTCA 62 |||||||||| |||||||||| |||||||||| || ||||||| |||| ||||| ||| ||||| TGGCGGCCTC GGCTGAGCAC GTTCTCCTCG TCAAACTGGC GGGTTGCCTC AACAGTGTCG 427 GCGTAAGTGA TCCTGGAATT GAACATGATC AGCTTCGGCT GGCTGACGCC GTTCTCCGTG 122 || ||||||| |||| || || |||||| ||| |||||||||| ||||||| || |||||||||| GCATAAGTGA TCCTTGAGTT GAACATAATC AGCTTCGGCT GGCTGACACC GTTCTCCGTG 487 CTCGTGCCGC TCGACCCACT GCCGCGTCCT GGGCTGCGTC TTCTCTTCTT 172 || ||||| | ||||||| || ||||||||| |||||||||| | |||||||| CTTGTGCCAC TCGACCCTCT GCCGCGTCCC GGGCTGCGTC TCCTCTTCTT 537 hqPGS_1006117D12YNX+_5268606- (3 172) ******************************************************************************** EST sequence 3 -strand (File: 5566683-) 1 GACATCCGGC GGAGGACCGG CGTAGTAGCC ACGGAGCACA GTGAGGTTCC TGTGCTTCAC 61 TTTCCCGAGA GATTCAGCCT CTTTCCTGAA CGACCCTTCA TCAATCACCA CGGCACCATC 121 AGCAGACGTG GACGGAAGCC GCAGAATCGC TAGCACGGTG CCGTCACTGT AACAAGCCTT 181 GAACACGAGG CCATGGCGGC CTCGGCTGAG CACGTTCTCC TCGTCAAACT GGCGGGTTGC 241 CTCAACAGTG TCGGCATAAG TGATCCTTGA GTTGAACATA ATCAGCTTCG GCTGGCTGAC 301 ACCGTTCTCC GTGCTTGTGC CACTCGACCC ACTGCCGCGT CCCGGGCTGC GTCTCCTCTT 361 CTT Predicted gene structure (within gDNA segment 1 to 556): Exon 1 3 172 ( 170 n); cDNA 194 363 ( 170 n); score: 0.924 MATCH 1006117D12YNX+ 5566683- 0.924 170 0.468 C PGS_1006117D12YNX+_5566683- (3 172) Alignment (genomic DNA sequence = upper lines): TGGCGGCCTC GGCTGAGCAC GTTCTCCTCG TCGAACTGGC GGGTCGCCTC AACCGTGTCA 62 |||||||||| |||||||||| |||||||||| || ||||||| |||| ||||| ||| ||||| TGGCGGCCTC GGCTGAGCAC GTTCTCCTCG TCAAACTGGC GGGTTGCCTC AACAGTGTCG 253 GCGTAAGTGA TCCTGGAATT GAACATGATC AGCTTCGGCT GGCTGACGCC GTTCTCCGTG 122 || ||||||| |||| || || |||||| ||| |||||||||| ||||||| || |||||||||| GCATAAGTGA TCCTTGAGTT GAACATAATC AGCTTCGGCT GGCTGACACC GTTCTCCGTG 313 CTCGTGCCGC TCGACCCACT GCCGCGTCCT GGGCTGCGTC TTCTCTTCTT 172 || ||||| | |||||||||| ||||||||| |||||||||| | |||||||| CTTGTGCCAC TCGACCCACT GCCGCGTCCC GGGCTGCGTC TCCTCTTCTT 363 hqPGS_1006117D12YNX+_5566683- (3 172) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 679: PGL 1 (+ strand): 3 190 AGS-1 (3 190) SCR (e 0.924) Exon 1 3 190 ( 188 n); score: 0.924 PGS (3 190) 5555585- PGS (3 172) 5268606- PGS (3 172) 5566683- 3-phase translation of AGS-1 (+strand): . . . . . . 3 TGGCGGCCTCGGCTGAGCACGTTCTCCTCGTCGAACTGGCGGGTCGCCTCAACCGTGTCA W R P R L S T F S S S N W R V A S T V S G G L G - A R S P R R T G G S P Q P C Q A A S A E H V L L V E L A G R L N R V . . . . . . 63 GCGTAAGTGATCCTGGAATTGAACATGATCAGCTTCGGCTGGCTGACGCCGTTCTCCGTG A - V I L E L N M I S F G W L T P F S V R K - S W N - T - S A S A G - R R S P C S V S D P G I E H D Q L R L A D A V L R . . . . . . 123 CTCGTGCCGCTCGACCCACTGCCGCGTCCTGGGCTGCGTCTTCTCTTCTTGACACCGTCA L V P L D P L P R P G L R L L F L T P S S C R S T H C R V L G C V F S S - H R H A R A A R P T A A S W A A S S L L D T V . 183 CGGCTCTC R L G S T A L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 190 GAGAGCCGTGACGGTGTCAAGAAGAGAAGACGCAGCCCAGGACGCGGCAGTGGGTCGAGC E S R D G V K K R R R S P G R G S G S S R A V T V S R R E D A A Q D A A V G R A E P - R C Q E E K T Q P R T R Q W V E . . . . . . 130 GGCACGAGCACGGAGAACGGCGTCAGCCAGCCGAAGCTGATCATGTTCAATTCCAGGATC G T S T E N G V S Q P K L I M F N S R I A R A R R T A S A S R S - S C S I P G S R H E H G E R R Q P A E A D H V Q F Q D . . . . . . 70 ACTTACGCTGACACGGTTGAGGCGACCCGCCAGTTCGACGAGGAGAACGTGCTCAGCCGA T Y A D T V E A T R Q F D E E N V L S R L T L T R L R R P A S S T R R T C S A E H L R - H G - G D P P V R R G E R A Q P . 10 GGCCGCCA G R A A R P P Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:39 2003 ________________________________________________________________________________ Sequence 19: 1006120C05YNX, from 1 to 254, both strands analyzed. ... started at: Mon Nov 10 17:48:39 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 5 ******************************************************************************** EST sequence 2 -strand (File: 4314896-) 1 AGACTGGTCT TATTATGCTC CGAAACACCT TGAACATCAA GTGCTCGCAG TCGTGCCCGC 61 GACTCCACTC GTGTCATGAT GTCGGCACAA GTCCGACCTA CCCACTGAGG TCGGTTNCAG 121 AGGAAGATGG GCAGGCGTTA NCGGAGAAGG AAGGCCTATC CTTCCTCGAG ACATCCGCCC 181 TCGAAGCCCT TAACGTCGAG AAGGCGTTTC AGACCGTCCT CTCCGACATC CATCAGATCA 241 TAAGCAAGAA GGCGCTTGCA GCCCAAGAGG CAGCAGGTAG TGGACCTCCA GGTCAAGGAA 301 CCACCATCAA CGTTGCGGAT TCGTCTGCCA ACATGAAGGG AGGGTGCTGC TCTTCCTAGG 361 TGTGCAGACA AAGACATGCT GCTGCTGCTG CAAAAAAGAG AGAGAGAAAC CTCATGGATC 421 GTACGATACT TTAGGTGTTA TGTAGGTGAC GACTCCTTTT GGCCTGTAAC TCCGGTGGGT 481 TGTAATCACA GTTCATACTT CTGCAAAGAA ATCCTCCTCT CAGGTAGATA TGGCGTGTAG 541 TTTTTGAAAT TTTGGTAGAG AGCGATGGTT GGCAGACTTG CGTGGAGCCC AGCTTGGTGT 601 TTTCTTTCAG TGTTCTATCT TAAGTAGCCC TCTGCTGGAA AAAGGACCCA GATATTTCTT 661 GTATTTGTAC TCGAGTTTGC GGTGTTACCA GATATNCTTT GATTCCGGTG CTAAATAAAA 721 AAAAAAAAAA AACT Predicted gene structure (within gDNA segment 1 to 254): Exon 1 17 82 ( 66 n); cDNA 72 133 ( 62 n); score: 0.758 Intron 1 83 147 ( 65 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.86) Exon 2 148 254 ( 107 n); cDNA 134 230 ( 97 n); score: 0.752 PPA cDNA 713 732 MATCH 1006120C05YNX+ 4314896- 0.754 173 0.681 G PGS_1006120C05YNX+_4314896- (17 82,148 254) Alignment (genomic DNA sequence = upper lines): TGTTATGATG GTCGGTAACA AGTCGGACTT GAACCACCTT AGGTCGGTCC CCGAGGAAGA 76 ||| ||||| ||||| | || |||| ||| | | ||| || |||||||| | |||||||| TGTCATGAT- GTCGGCA-CA AGTCCGACCT -ACCCA-CTG AGGTCGGTTN CAGAGGAAGA 127 CAGACAGCCA GGCATTTTCG TTCGGAGNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 136 | || TGGGCA.... .......... .......... .......... .......... .......... 133 NNNNNNNNNN NNNNNNNGTC GGAGAAGGAA GGCCTGTCCT TCCTCGAGAC ATCTGCCCCT 196 | |||||||||| ||||| |||| |||||||||| ||| | |||| .......... .GGCGTTANC GGAGAAGGAA GGCCTATCCT TCCTCGAGAC ATCCG-CCCT 181 GGAGGGGGGC AATAAACGTC GAGAAGGCGT TCCACACCAC ACCATCTTGA GCGAGATC 254 || | | ||| |||| |||||||||| | || ||| || || | ||| ||| CGA---AGCC CTTAA-CGTC GAGAAGGCGT TTCAGACC-G TCC-TC-T-- CCGACATC 230 hqPGS_1006120C05YNX+_4314896- (17 82,148 254) ******************************************************************************** EST sequence 1 -strand (File: 4314875-) 1 GACCTGAACC GCCTAGGTCG GTTCCAGAGG AAGATGGGCA GGCGTTACGA AGAAGGAAGG 61 CCTATCCTTC CTCGAGACAT CCGCCCTCGA AGCCCTTAAC GTCGAGAAGG CGTTTCAGCC 121 GGTCCTGTCC GACATCCATC AGATCATAAG CAAGAAGGCG CTTGCAGCCC AAGAGGCAGC 181 AGGTAGTGGA CCTCCAGGTC AAGGAACCAC CATCAACGTT GCGGATTCGT CTGCCAACAT 241 GAAGGGAGGG TGCTGCTCTT CCTAGGTGTG CAGACAAAGA CATGCTGCTG CTGCTGCAAA 301 AAAGAGAGAG AGAAACCTCA TGGATCGTNC GATACTTTAG GTGTTATGTA GGTGACGACT 361 CCTTTTGGCC TGTAACTCCG GTGGGTTGTA CTCCCAGTTC ATACTTCTGC AAAGAAATCC 421 TCATAACCCC CACATATGGC GTGTAGTTTT TGAAATTTTG GTAGAGAGCG ATGGTTGGCA 481 GACTTGCGTG GAGCCCAGCT TGGTGTTTTC TTTCAGTGTT CTATCTTAAG TAGCCCTCTG 541 CTGGAAAAAG GACCCNAGAT ATTTCCCCCC CCCCCCCACA AAAAGTTTNC CGGTGTTCCC 601 AAATATCTT Predicted gene structure (within gDNA segment 1 to 254): Exon 1 156 254 ( 99 n); cDNA 48 136 ( 89 n); score: 0.737 MATCH 1006120C05YNX+ 4314875- 0.737 99 0.390 G PGS_1006120C05YNX+_4314875- (156 254) Alignment (genomic DNA sequence = upper lines): CGGAGAAGGA AGGCCTGTCC TTCCTCGAGA CATCTGCCCC TGGAGGGGGG CAATAAACGT 215 || ||||||| |||||| ||| |||||||||| |||| | ||| | || | | | ||||| CGAAGAAGGA AGGCCTATCC TTCCTCGAGA CATCCG-CCC TCGA----AG CCCTTAACGT 102 CGAGAAGGCG TTCCACACCA CACCATCTTG AGCGAGATC 254 |||||||||| || || | | || || ||| ||| CGAGAAGGCG TT--TCA--G C-CGGTCCTG TCCGACATC 136 hqPGS_1006120C05YNX+_4314875- (156 254) ******************************************************************************** EST sequence 3 -strand (File: 4321044-) 1 GTGTCATATG TCGCACAGTC CGACNTGANC CNCTGAGTCG GTTCCAGAGG AAGATGGGCA 61 GGCGTTAGCG GAGAAGGAAG GCCTATCCTT CCTCGAGACA TCCGCCCTCG AAGCCCTTAA 121 CGTCGAGAAG GCGTTTCAGA CCGTCCTCTC CGACATCCAT CAGATCATAA GCAAGAAGGC 181 GCTTGCAGCC CAAGAGGCAG CAGGTAGTGG ACCTCCAGGT CAAGGAACCA CCATCAACGT 241 TGCGGATTCG TCTGCCAACA TGAAGGGAGG GTGCTGCTCT TCCTAGGTGT GCAGACAAAG 301 ACATGCTGCT GCTGCTGCAA AAAAGAGAGA GAGAAACCTC ATGGATCGTA CGATACTTTA 361 GGTGTTATGT AGGTGACGAC TCCTTTTGGC CTGTAACTCC GGTGGGTTGT AATCACAGTT 421 CATACTTCTG CAAAGAAATC CTCCTCTCAG GTAGATATGG CGTGTAGTTT TTGAAATTTT 481 GGTAGAGAGC GATGGTTGGC AGACTTGCGT GGAGCCCAGC TTGGTGTTTT CTTTCAGTGT 541 TCTATCTTAA GTAGCCCTCT GCTGGAAAAA GGACCCAGAT ATTTCTTGTA TTTGTACTCG 601 AGTTTGCGGT GT Predicted gene structure (within gDNA segment 1 to 254): Exon 1 156 254 ( 99 n); cDNA 69 157 ( 89 n); score: 0.768 MATCH 1006120C05YNX+ 4321044- 0.768 99 0.390 G PGS_1006120C05YNX+_4321044- (156 254) Alignment (genomic DNA sequence = upper lines): CGGAGAAGGA AGGCCTGTCC TTCCTCGAGA CATCTGCCCC TGGAGGGGGG CAATAAACGT 215 |||||||||| |||||| ||| |||||||||| |||| | ||| | || | | | ||||| CGGAGAAGGA AGGCCTATCC TTCCTCGAGA CATCCG-CCC TCGA----AG CCCTTAACGT 123 CGAGAAGGCG TTCCACACCA CACCATCTTG AGCGAGATC 254 |||||||||| || || ||| || || | ||| ||| CGAGAAGGCG TTTCAGACC- GTCC-TC-T- -CCGACATC 157 hqPGS_1006120C05YNX+_4321044- (156 254) ******************************************************************************** EST sequence 4 -strand (File: 6538984-) 1 AGGTCGGTTC CAGAGGAAGA TGGGCAGGCG TTAGCGGAGA AGGAAGGCCT ATCCTTCCTC 61 GAGACATCCG CCCTCGAAGC CCTTAACGTC GAGAAGGCGT TTCAGACCGT CCTCTCCGAC 121 ATCCATCAGA TCATAAGCAA GAAGGCGCTT GCAGCCCAGG AGGCAGCAGG CAGTGGACCT 181 CCAGGTCAAG GAACCACCAT CAACGTTGCG GATTCGTCTG CCAACATGAA GGGAGGGTGC 241 TGCTCTTCCT AGGTGCAGAC AAAGACATGC TGCTGCTGCT GCTGCTGCTG CAAAGAAGAG 301 AGAGAGAAAC CTCATGGATC GTACGATACT TTAGGTGTTA TGTAGGTGAC GACTCCTTTT 361 GGCCTGTAAC TCCGGTGGGT TGTAATCACA GTTCATACTT CTGCAAAGAA ATCCTCCTCT 421 CAGGTAGATA TGGCGTGTAG TTTCTGAAAT TTTGGTAGAG ACCGATGGTT GGCAGACTTG 481 CGTGGAGCCC AGCTTAGTGT TTTCTTTCAG TGTTCTATCT TAAGTAGCCC TCTGCTGGAA 541 AAAGGACCCA GATTTTCTTG TTTTGT Predicted gene structure (within gDNA segment 1 to 254): Exon 1 156 254 ( 99 n); cDNA 35 123 ( 89 n); score: 0.768 MATCH 1006120C05YNX+ 6538984- 0.768 99 0.390 G PGS_1006120C05YNX+_6538984- (156 254) Alignment (genomic DNA sequence = upper lines): CGGAGAAGGA AGGCCTGTCC TTCCTCGAGA CATCTGCCCC TGGAGGGGGG CAATAAACGT 215 |||||||||| |||||| ||| |||||||||| |||| | ||| | || | | | ||||| CGGAGAAGGA AGGCCTATCC TTCCTCGAGA CATCCG-CCC TCGA----AG CCCTTAACGT 89 CGAGAAGGCG TTCCACACCA CACCATCTTG AGCGAGATC 254 |||||||||| || || ||| || || | ||| ||| CGAGAAGGCG TTTCAGACC- GTCC-TC-T- -CCGACATC 123 hqPGS_1006120C05YNX+_6538984- (156 254) Total number of EST alignments reported: 4 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 254: PGL 1 (+ strand): 17 254 AGS-1 (17 82,148 254) SCR (e 0.758 d 0.000 a 0.000,e 0.768) Exon 1 17 82 ( 66 n); score: 0.758 Intron 1 83 147 ( 65 n); Pd: 0.000 Pa: 0.000 Exon 2 148 254 ( 107 n); score: 0.768 PGS (17 82,148 254) 4314896- PGS (156 254) 4314875- PGS (156 254) 4321044- PGS (156 254) 6538984- 3-phase translation of AGS-1 (+strand): . . . . . . 17 TGTTATGATGGTCGGTAACAAGTCGGACTTGAACCACCTTAGGTCGGTCCCCGAGGAAGA C Y D G R - Q V G L E P P - V G P R G R V M M V G N K S D L N H L R S V P E E D L - W S V T S R T - T T L G R S P R K . : . . . . . 77 CAGACA : NNNNNNGTCGGAGAAGGAAGGCCTGTCCTTCCTCGAGACATCTGCCCCTGGAGG Q T : X X V G E G R P V L P R D I C P W R R X : X X S E K E G L S F L E T S A P G G T D : X X X R R R K A C P S S R H L P L E . . . . . . 202 GGGGCAATAAACGTCGAGAAGGCGTTCCACACCACACCATCTTGAGCGAGATC G A I N V E K A F H T T P S - A R G Q - T S R R R S T P H H L E R D G G N K R R E G V P H H T I L S E I Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:40 2003 ________________________________________________________________________________ Sequence 20: 1006125G02YNX, from 1 to 910, both strands analyzed. ... started at: Mon Nov 10 17:48:40 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:40 2003 ________________________________________________________________________________ Sequence 21: 1006126B03YNX, from 1 to 790, both strands analyzed. ... started at: Mon Nov 10 17:48:40 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 15590230+) 1 GCCGATCGAG CACCGGTGGA ACCAGCACGG CCTCGGCGGC GACAATGTCC TGGGCAGCTG 61 CCGCGACCTG CACCCGGGGC CCGTGAGCCT GCTGCATTGG TCCGGGTCCG GCAAGCCGTG 121 GGCGCGGCTG GGCGCCGGGC GGCCGTGCCC GCTCGATGCG CTCTGGGCAC CCTTCGACCT 181 GTACGGCCCC GGCCCCGGCG GCGGCGCCGA GGAGTCCCCG TACAAATTCT GAGCTCCTGA 241 TTTCTTGCTC TCCATTTACC TACATGTTTT TTTATTCGCA AAAAACAGAC TATATGTTCT 301 CCATCCTTTT CTTCTTCTTC TTCTTCTTTT TTCCCCTCTG GGCTGTTGGA TTAAATGTTT 361 TGTGTTAGAT TGTTCATGTT CGTTCTCGGT GAAAAAAAAA AAAAAAAAAA AAAAAAACTC 421 GAGCCCGG Predicted gene structure (within gDNA segment 790 to 1): Exon 1 630 433 ( 198 n); cDNA 10 209 ( 200 n); score: 0.788 PPA cDNA 392 418 MATCH 1006126B03YNX- 15590230+ 0.788 198 0.463 C PGS_1006126B03YNX-_15590230+ (630 433) Alignment (genomic DNA sequence = upper lines): GCACCGGTGG AACCAGCACG GGCTCGGCGG CGACAACGTG GCGGGGCAG- TGCCGGGAGC 572 |||||||||| |||||||||| | |||||||| |||||| || | |||||| ||||| || | GCACCGGTGG AACCAGCACG GCCTCGGCGG CGACAATGT- CCTGGGCAGC TGCCGCGACC 68 TGCACCCCGG TCCGGTCAGC CTGCTGCACT GGAGCGGAAA GGGGAAGCCG TGGCTGCGGC 512 ||||||| || || || ||| |||||||| | || ||| || |||||| ||| ||||| TGCACCCGGG GCCCGTGAGC CTGCTGCATT GGTCCGGGTC CGGCAAGCCG TGGGCGCGGC 128 TGGACGCCGG CCGGCCGTGC CCGCTCGACG CGCTCTGGGC GCCCTACGAC C--TCCTTTC 454 ||| |||||| ||||||||| |||||||| | |||||||||| |||| |||| | | | | TGGGCGCCGG GCGGCCGTGC CCGCTCGATG CGCTCTGGGC ACCCTTCGAC CTGTACGGCC 188 CCCGCCGCGG CGCCCGGGAC G 433 || ||| ||| || | | | | | CCGGCCCCGG CGGCGGCGCC G 209 hqPGS_1006126B03YNX-_15590230+ (630 433) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 790: PGL 1 (- strand): 630 433 AGS-1 (630 433) SCR (e 0.788) Exon 1 630 433 ( 198 n); score: 0.788 PGS (630 433) 15590230+ 3-phase translation of AGS-1 (-strand): . . . . . . 630 GCACCGGTGGAACCAGCACGGGCTCGGCGGCGACAACGTGGCGGGGCAGTGCCGGGAGCT A P V E P A R A R R R Q R G G A V P G A H R W N Q H G L G G D N V A G Q C R E L T G G T S T G S A A T T W R G S A G S . . . . . . 570 GCACCCCGGTCCGGTCAGCCTGCTGCACTGGAGCGGAAAGGGGAAGCCGTGGCTGCGGCT A P R S G Q P A A L E R K G E A V A A A H P G P V S L L H W S G K G K P W L R L C T P V R S A C C T G A E R G S R G C G . . . . . . 510 GGACGCCGGCCGGCCGTGCCCGCTCGACGCGCTCTGGGCGCCCTACGACCTCCTTTCCCC G R R P A V P A R R A L G A L R P P F P D A G R P C P L D A L W A P Y D L L S P W T P A G R A R S T R S G R P T T S F P . . 450 GCCGCGGCGCCCGGGACG A A A P G T P R R P G R R G A R D Maximal non-overlapping open reading frames (>= 64 codons): >1006126B03YNX-_PGL-1_AGS-1_PPS_1 (630 433) (frame '1'; 198 bp, 66 residues) 1 APVEPARARR RQRGGAVPGA APRSGQPAAL ERKGEAVAAA GRRPAVPARR ALGALRPPFP 61 AAAPGT >1006126B03YNX-_PGL-1_AGS-1_PPS_3 (629 435) (frame '2'; 195 bp, 65 residues) 1 HRWNQHGLGG DNVAGQCREL HPGPVSLLHW SGKGKPWLRL DAGRPCPLDA LWAPYDLLSP 61 PRRPG >1006126B03YNX-_PGL-1_AGS-1_PPS_2 (628 434) (frame '0'; 195 bp, 65 residues) 1 TGGTSTGSAA TTWRGSAGSC TPVRSACCTG AERGSRGCGW TPAGRARSTR SGRPTTSFPR 61 RGARD 3-phase translation of AGS-1 (+strand): . . . . . . 433 CGTCCCGGGCGCCGCGGCGGGGAAAGGAGGTCGTAGGGCGCCCAGAGCGCGTCGAGCGGG R P G R R G G E R R S - G A Q S A S S G V P G A A A G K G G R R A P R A R R A G S R A P R R G K E V V G R P E R V E R . . . . . . 493 CACGGCCGGCCGGCGTCCAGCCGCAGCCACGGCTTCCCCTTTCCGCTCCAGTGCAGCAGG H G R P A S S R S H G F P F P L Q C S R T A G R R P A A A T A S P F R S S A A G A R P A G V Q P Q P R L P L S A P V Q Q . . . . . . 553 CTGACCGGACCGGGGTGCAGCTCCCGGCACTGCCCCGCCACGTTGTCGCCGCCGAGCCCG L T G P G C S S R H C P A T L S P P S P - P D R G A A P G T A P P R C R R R A R A D R T G V Q L P A L P R H V V A A E P . . 613 TGCTGGTTCCACCGGTGC C W F H R C A G S T G V L V P P V Maximal non-overlapping open reading frames (>= 64 codons): >1006126B03YNX+_PGL-1_AGS-1_PPS_1 (435 629) (frame '0'; 195 bp, 65 residues) 1 SRAPRRGKEV VGRPERVERA RPAGVQPQPR LPLSAPVQQA DRTGVQLPAL PRHVVAAEPV 61 LVPPV ... finished at: Mon Nov 10 17:48:41 2003 ________________________________________________________________________________ Sequence 22: 1006140C05YNX, from 1 to 655, both strands analyzed. ... started at: Mon Nov 10 17:48:41 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:41 2003 ________________________________________________________________________________ Sequence 23: 1006156A07YNX, from 1 to 679, both strands analyzed. ... started at: Mon Nov 10 17:48:41 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:41 2003 ________________________________________________________________________________ Sequence 24: 1006158C10YNX, from 1 to 1104, both strands analyzed. ... started at: Mon Nov 10 17:48:41 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: 6653973-) 1 ACTTGCAAGC TTTAAATTGT GCCTCTTTCC TTGGGGCAAA GTTGCAAAAG ATGAATGTCA 61 GCATGAATGT CTATAGCTCT TGTCAAATAA CATTAAAAGA TTTTTCNCTG CAAGTTGGAT 121 CTCAAGAATC TGGATGCCTC CTTCCAAGTA TGCCCTCTGA TGCATCCTTC GACAGCACTT 181 CTGGGATTAG CTTCACATGC GATCTGAATG ACAACATCGC AGCCCCATGG CCATCTTCCA 241 TGCAAGCACC ATCTTCATCG TGCAACAAGT CTGTCAATAT CCCAGAGCGA CCTGCTGCGA 301 CATCGGCACA AAGTGGTGTG AACCACAAGA ACCTAAAGCT AAGACTGCTT GCCTCTTTGG 361 TCTCCCTTCT TCTGGTGCTC TTGGTACAAG TTTAGCAAGG TCCAGTTGCC CTATTATCGC 421 GATGATTCGT TCAGGAGAGC TAACTGGAAG TCAGTGAAGC GCTGAGTTTT TTGCGATCTC 481 GCGGTCGCAT CGAAGTGTAG TAGGTTTCAC GTGTATTTTA TTTTATTTTA TTTTTTGAAT 541 CTCCTGGTAG CAATTAGTGT AGTTTGTTGT AAGGAATATA TGTATAAT Predicted gene structure (within gDNA segment 1104 to 1): Exon 1 494 237 ( 258 n); cDNA 332 588 ( 257 n); score: 0.992 MATCH 1006158C10YNX- 6653973- 0.992 258 0.439 C PGS_1006158C10YNX-_6653973- (494 237) Alignment (genomic DNA sequence = upper lines): CCTAAAGCTA AGACTGCTTG CCTCTTTGGT CTCCCTTCTT CTGGTGCTCT TGGTACAAGT 435 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTAAAGCTA AGACTGCTTG CCTCTTTGGT CTCCCTTCTT CTGGTGCTCT TGGTACAAGT 391 TTAGCAAGGT CCAGTGTGCC CTATTATCGC GATGATTCGT TCAGGAGAGC TAACTGGAAG 375 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGCAAGGT CCAGT-TGCC CTATTATCGC GATGATTCGT TCAGGAGAGC TAACTGGAAG 450 TCAGTGAAGC GCTGAGTTTT TTGCGATCTC GCGGTCGCAT CGAAGTGTAG TAGGTTTCAC 315 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTGAAGC GCTGAGTTTT TTGCGATCTC GCGGTCGCAT CGAAGTGTAG TAGGTTTCAC 510 GTGTATTTTA TTTTATTTTA TTTTTTGAAT CTCCTGGTAG CAATTAGTGT AGTTTGCTGT 255 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| GTGTATTTTA TTTTATTTTA TTTTTTGAAT CTCCTGGTAG CAATTAGTGT AGTTTGTTGT 570 AAGGAATATA TGTATAAT 237 |||||||||| |||||||| AAGGAATATA TGTATAAT 588 hqPGS_1006158C10YNX-_6653973- (494 237) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 1104: PGL 1 (- strand): 494 237 AGS-1 (494 237) SCR (e 0.992) Exon 1 494 237 ( 258 n); score: 0.992 PGS (494 237) 6653973- 3-phase translation of AGS-1 (-strand): . . . . . . 494 CCTAAAGCTAAGACTGCTTGCCTCTTTGGTCTCCCTTCTTCTGGTGCTCTTGGTACAAGT P K A K T A C L F G L P S S G A L G T S L K L R L L A S L V S L L L V L L V Q V - S - D C L P L W S P F F W C S W Y K . . . . . . 434 TTAGCAAGGTCCAGTGTGCCCTATTATCGCGATGATTCGTTCAGGAGAGCTAACTGGAAG L A R S S V P Y Y R D D S F R R A N W K - Q G P V C P I I A M I R S G E L T G S F S K V Q C A L L S R - F V Q E S - L E . . . . . . 374 TCAGTGAAGCGCTGAGTTTTTTGCGATCTCGCGGTCGCATCGAAGTGTAGTAGGTTTCAC S V K R - V F C D L A V A S K C S R F H Q - S A E F F A I S R S H R S V V G F T V S E A L S F L R S R G R I E V - - V S . . . . . . 314 GTGTATTTTATTTTATTTTATTTTTTGAATCTCCTGGTAGCAATTAGTGTAGTTTGCTGT V Y F I L F Y F L N L L V A I S V V C C C I L F Y F I F - I S W - Q L V - F A V R V F Y F I L F F E S P G S N - C S L L . . 254 AAGGAATATATGTATAAT K E Y M Y N R N I C I - G I Y V - Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 237 ATTATACATATATTCCTTACAGCAAACTACACTAATTGCTACCAGGAGATTCAAAAAATA I I H I F L T A N Y T N C Y Q E I Q K I L Y I Y S L Q Q T T L I A T R R F K K - Y T Y I P Y S K L H - L L P G D S K N . . . . . . 297 AAATAAAATAAAATACACGTGAAACCTACTACACTTCGATGCGACCGCGAGATCGCAAAA K - N K I H V K P T T L R C D R E I A K N K I K Y T - N L L H F D A T A R S Q K K I K - N T R E T Y Y T S M R P R D R K . . . . . . 357 AACTCAGCGCTTCACTGACTTCCAGTTAGCTCTCCTGAACGAATCATCGCGATAATAGGG N S A L H - L P V S S P E R I I A I I G T Q R F T D F Q L A L L N E S S R - - G K L S A S L T S S - L S - T N H R D N R . . . . . . 417 CACACTGGACCTTGCTAAACTTGTACCAAGAGCACCAGAAGAAGGGAGACCAAAGAGGCA H T G P C - T C T K S T R R R E T K E A T L D L A K L V P R A P E E G R P K R Q A H W T L L N L Y Q E H Q K K G D Q R G . . 477 AGCAGTCTTAGCTTTAGG S S L S F R A V L A L K Q S - L - Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:42 2003 ________________________________________________________________________________ Sequence 25: 1006160D10YNX, from 1 to 757, both strands analyzed. ... started at: Mon Nov 10 17:48:42 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:42 2003 ________________________________________________________________________________ Sequence 26: 1006160F11YNX, from 1 to 555, both strands analyzed. ... started at: Mon Nov 10 17:48:42 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:42 2003 ________________________________________________________________________________ Sequence 27: 1006161B02YNX, from 1 to 502, both strands analyzed. ... started at: Mon Nov 10 17:48:42 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:42 2003 ________________________________________________________________________________ Sequence 28: 1006165D11YNX, from 1 to 295, both strands analyzed. ... started at: Mon Nov 10 17:48:42 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 2 +strand (File: 8665310+) 1 TATGGATGGC AATGTAATGT TTACAAACAT ATGAAAGAAT ATGATCACAC AAATCTATCT 61 GTTTCACGAT CTCGCATTCT CACACAGAAC TTCTATATCT TTGCATTCCC CCAGGTTCGG 121 TACCCTCTCT CTCTCTCAGT CTCTCTCTCC TAGCGGGTGT TTTTTTATTA TTTCAACAGA 181 AGATTATACT AGCAAACATG GATTACAACA GTCAAATCAG ACTACCGAGA CAAAGCTGCT 241 CACCTGACCT GGCCAAATCT GGTTCTGGTC CTCATAAACC CTCCTCTCGT GACCGGATCA 301 GACTCCTTGG CACTGCAGTT CCAGTAAGCC CCCACC Predicted gene structure (within gDNA segment 295 to 1): Exon 1 295 180 ( 116 n); cDNA 140 255 ( 116 n); score: 0.957 Intron 1 179 106 ( 74 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0.96) Exon 2 105 26 ( 80 n); cDNA 256 336 ( 81 n); score: 0.975 MATCH 1006165D11YNX- 8665310+ 0.964 196 0.664 G PGS_1006165D11YNX-_8665310+ (295 180,105 26) Alignment (genomic DNA sequence = upper lines): TCTCTCTCTC CTAGCGGGAG GTGTTCCATT ATTTCAACAG AAGATTATAC TAGCAAACAT 236 |||||||||| |||||||| | | || ||| |||||||||| |||||||||| |||||||||| TCTCTCTCTC CTAGCGGGTG TTTTTTTATT ATTTCAACAG AAGATTATAC TAGCAAACAT 199 GGATTACAAC AGTCAAATCA GACTACCGAG ACAAAGCTGC TCACCTGACC TGGCCAATCG 176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGATTACAAC AGTCAAATCA GACTACCGAG ACAAAGCTGC TCACCTGACC TGGCCA.... 255 ACGATAGATT GCCATTATGA NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 116 .......... .......... .......... .......... .......... .......... 255 NNNNNNNNNN AATCTGGTTC TGGTCCT-AT AAACCCTCCT CTCGTGACCG GATCAGACTC 57 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| .......... AATCTGGTTC TGGTCCTCAT AAACCCTCCT CTCGTGACCG GATCAGACTC 305 CTTGGCACTG CAGTTCCAGT AAGCCCCCAC C 26 |||||||||| |||||||||| |||||||||| | CTTGGCACTG CAGTTCCAGT AAGCCCCCAC C 336 hqPGS_1006165D11YNX-_8665310+ (295 180,105 26) ******************************************************************************** EST sequence 1 -strand (File: 9028585-) 1 TTTTTTTTTT TTTTTTTTTT TCAAAAGAAT GACACTGAAG CTACAAAAAA TACCATCCTA 61 GAATATGGAT GGCAATGTAA TGTTTACAAA CATATGAAAG AATATGATCA CACAAATCTA 121 TCTGGTTTCA CGATCTCGCA TTCTCACACA GACTTCTATA TCTTTGCATT CCCCCAGGTT 181 CGGTACCCTC TCTCTCTCTC AGTCTCTCTC TCCTAGCGGG AGGTGTTCCA TTATTTCAAC 241 AGAAGATTAT ACTAGCAAAC ATGGATTACA ACAGTCAAAT CAGACTACCG AGACAAAGCT 301 GCTCACCTGA CCTGGCCAAA TCTGGTTCTG GTCCTCATAA ACCCTCCTCT CGTGACCGGA 361 TCAGACTCCT TGGCACTGCA GTTCCAGTAA GCCCCCA Predicted gene structure (within gDNA segment 295 to 1): Exon 1 295 180 ( 116 n); cDNA 203 318 ( 116 n); score: 1.000 Intron 1 179 106 ( 74 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0.96) Exon 2 105 28 ( 78 n); cDNA 319 397 ( 79 n); score: 0.974 PPA cDNA 21 1 MATCH 1006165D11YNX- 9028585- 0.990 194 0.658 G PGS_1006165D11YNX-_9028585- (295 180,105 28) Alignment (genomic DNA sequence = upper lines): TCTCTCTCTC CTAGCGGGAG GTGTTCCATT ATTTCAACAG AAGATTATAC TAGCAAACAT 236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCTCTCTC CTAGCGGGAG GTGTTCCATT ATTTCAACAG AAGATTATAC TAGCAAACAT 262 GGATTACAAC AGTCAAATCA GACTACCGAG ACAAAGCTGC TCACCTGACC TGGCCAATCG 176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGATTACAAC AGTCAAATCA GACTACCGAG ACAAAGCTGC TCACCTGACC TGGCCA.... 318 ACGATAGATT GCCATTATGA NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 116 .......... .......... .......... .......... .......... .......... 318 NNNNNNNNNN AATCTGGTTC TGGTCCT-AT AAACCCTCCT CTCGTGACCG GATCAGACTC 57 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| .......... AATCTGGTTC TGGTCCTCAT AAACCCTCCT CTCGTGACCG GATCAGACTC 368 CTTGGCACTG CAGTTCCAGT AAGCCCCCA 28 |||||||||| |||||||||| ||||||||| CTTGGCACTG CAGTTCCAGT AAGCCCCCA 397 hqPGS_1006165D11YNX-_9028585- (295 180,105 28) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 295: PGL 1 (- strand): 295 26 AGS-1 (295 180,105 26) SCR (e 1.000 d 0.000 a 0.000,e 0.975) Exon 1 295 180 ( 116 n); score: 1.000 Intron 1 179 106 ( 74 n); Pd: 0.000 Pa: 0.000 Exon 2 105 26 ( 80 n); score: 0.975 PGS (295 180,105 26) 8665310+ PGS (295 180,105 28) 9028585- 3-phase translation of AGS-1 (-strand): . . . . . . 295 TCTCTCTCTCCTAGCGGGAGGTGTTCCATTATTTCAACAGAAGATTATACTAGCAAACAT S L S P S G R C S I I S T E D Y T S K H L S L L A G G V P L F Q Q K I I L A N M S L S - R E V F H Y F N R R L Y - Q T . . . . . . : 235 GGATTACAACAGTCAAATCAGACTACCGAGACAAAGCTGCTCACCTGACCTGGCCA : AATC G L Q Q S N Q T T E T K L L T - P G Q : I D Y N S Q I R L P R Q S C S P D L A : K S W I T T V K S D Y R D K A A H L T W P : N . . . . . . 101 TGGTTCTGGTCCTATAAACCCTCCTCTCGTGACCGGATCAGACTCCTTGGCACTGCAGTT W F W S Y K P S S R D R I R L L G T A V G S G P I N P P L V T G S D S L A L Q F L V L V L - T L L S - P D Q T P W H C S . . 41 CCAGTAAGCCCCCACC P V S P H Q - A P T S S K P P Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:43 2003 ________________________________________________________________________________ Sequence 29: 1006166F10YNX, from 1 to 820, both strands analyzed. ... started at: Mon Nov 10 17:48:43 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 6538824-) 1 CTTGGAGATG GCAGCAGGGC AAGAGCAAGC TGCAGAGCGC GGAAGGGGCC AGTCTGTTCA 61 CGCCGTTCGG CGGCGGGCCG CGGCTGTGCC CGGGCTACGA GCTCGCCCGG GTGGTGGTTT 121 CCGTCTTCCT CCACCACCTC GTCACGCGCT TTAGCTGGGA GGAAGCCGAG GAGGACAGGA 181 TTGTCTTCTT CCCCACCATC CGGACCCTCA AGGGATACCC CATCATCCTA CGGCGGCGAC 241 CGGATTGCGA TGATCTCTGA CCTCATGGCT AGGTTCTCCC CCCTTATCTT CTTCGGATCA 301 AGGCTGAAGG CTAAGCATTA GATAGAGTAA GGTGGATGTC GTCGTGGCTA GTAGGTGCAT 361 GGTGGTTTCT GCCACTCACT CACTCACTCA CTCACTCTGT TGTCTGTTTG TTCCTGTTCC 421 TCTCTGTTTT CTCTTGCTCT GTAACCTGGA CCTGGTACGA GTCAGCAGCC AGCAGCAAAC 481 TCGCTTTTTG TTTGTA Predicted gene structure (within gDNA segment 1 to 820): Exon 1 96 232 ( 137 n); cDNA 18 154 ( 137 n); score: 0.993 Intron 1 233 426 ( 194 n); Pd: 0.486 (s: 0.98), Pa: 0.841 (s: 0.98) Exon 2 427 764 ( 338 n); cDNA 155 496 ( 342 n); score: 0.944 MATCH 1006166F10YNX+ 6538824- 0.958 475 0.958 C PGS_1006166F10YNX+_6538824- (96 232,427 764) Alignment (genomic DNA sequence = upper lines): GGCAAGAGCA AGCTGCAGAG CGCGGAAGGG GCCAGTCTGT TCACGCCGTT CGGCGGCGGG 155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAAGAGCA AGCTGCAGAG CGCGGAAGGG GCCAGTCTGT TCACGCCGTT CGGCGGCGGG 77 CCGCGGCTGT GCCCGGGCTA CGAGCTCGCC CGGGTGGTGG TTTCCGTCTT CCTCCGCCAC 215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| CCGCGGCTGT GCCCGGGCTA CGAGCTCGCC CGGGTGGTGG TTTCCGTCTT CCTCCACCAC 137 CTCGTCACGC GCTTTAGGTG AGCCGTCCTT CTCTTTATTC TCTCCCGCCG GCGAGANNNN 275 |||||||||| ||||||| CTCGTCACGC GCTTTAG... .......... .......... .......... .......... 154 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNCCCG CCGGCTGCTC 335 .......... .......... .......... .......... .......... .......... 154 TTGAGGCGGC TCTGTGTGTG TGTGTGCTCG GAAGTCGGAA CGATGCTATG CCGCTCGCTC 395 .......... .......... .......... .......... .......... .......... 154 TGATTGGATT GGATTCTTGA CCAACAAACA GCTGGGAGGA AGCCGAGGAG GACAGGATTG 455 ||||||||| |||||||||| |||||||||| .......... .......... .......... .CTGGGAGGA AGCCGAGGAG GACAGGATTG 183 TCTTCTTCCC CACCACCCGG ACCCTCAAGG GATACCCCAT CATCCTACGG CGGCGACCGG 515 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTTCCC CACCATCCGG ACCCTCAAGG GATACCCCAT CATCCTACGG CGGCGACCGG 243 ATTGCGATGA TCTCTGACCT CATGGCTAGG TTCTCCCCCC TTATCTTCTT CGGATCAAGG 575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCGATGA TCTCTGACCT CATGGCTAGG TTCTCCCCCC TTATCTTCTT CGGATCAAGG 303 CTGAAGGCTA AGCATTAGGT AGAGTAAAGG GGATGTCG-- G-GGCTAGTA GGTGCATGGG 632 |||||||||| |||||||| | ||||||| | |||||||| | |||||||| ||||||||| CTGAAGGCTA AGCATTAGAT AGAGTAAGGT GGATGTCGTC GTGGCTAGTA GGTGCATGGT 363 GGTTTCTGCC ACT--CTCAC TCACTCACTC ACTCTGTTGT CTGTTTGTTC CTGTTCCTCT 690 |||||||||| ||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTCTGCC ACTCACTCAC TCACTCACTC ACTCTGTTGT CTGTTTGTTC CTGTTCCTCT 423 CTGTTTTCTT CTTGCTCTGT AACCTGGACC TGGTACGAGT CAGCAGCCAG CAGCAAACTC 750 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTTTC-T CTTGCTCTGT AACCTGGACC TGGTACGAGT CAGCAGCCAG CAGCAAACTC 482 GCGTTTTGCC TGTA 764 || ||||| |||| GCTTTTTGTT TGTA 496 hqPGS_1006166F10YNX+_6538824- (96 232,427 764) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 820: PGL 1 (+ strand): 96 764 AGS-1 (96 232,427 764) SCR (e 0.993 d 0.486 a 0.841,e 0.944) Exon 1 96 232 ( 137 n); score: 0.993 Intron 1 233 426 ( 194 n); Pd: 0.486 Pa: 0.841 Exon 2 427 764 ( 338 n); score: 0.944 PGS (96 232,427 764) 6538824- 3-phase translation of AGS-1 (+strand): . . . . . . 96 GGCAAGAGCAAGCTGCAGAGCGCGGAAGGGGCCAGTCTGTTCACGCCGTTCGGCGGCGGG G K S K L Q S A E G A S L F T P F G G G A R A S C R A R K G P V C S R R S A A G Q E Q A A E R G R G Q S V H A V R R R . . . . . . 156 CCGCGGCTGTGCCCGGGCTACGAGCTCGCCCGGGTGGTGGTTTCCGTCTTCCTCCGCCAC P R L C P G Y E L A R V V V S V F L R H R G C A R A T S S P G W W F P S S S A T A A A V P G L R A R P G G G F R L P P P . . : . . . . 216 CTCGTCACGCGCTTTAG : CTGGGAGGAAGCCGAGGAGGACAGGATTGTCTTCTTCCCCACC L V T R F S : W E E A E E D R I V F F P T S S R A L : A G R K P R R T G L S S S P P P R H A L - : L G G S R G G Q D C L L P H . . . . . . 470 ACCCGGACCCTCAAGGGATACCCCATCATCCTACGGCGGCGACCGGATTGCGATGATCTC T R T L K G Y P I I L R R R P D C D D L P G P S R D T P S S Y G G D R I A M I S H P D P Q G I P H H P T A A T G L R - S . . . . . . 530 TGACCTCATGGCTAGGTTCTCCCCCCTTATCTTCTTCGGATCAAGGCTGAAGGCTAAGCA - P H G - V L P P Y L L R I K A E G - A D L M A R F S P L I F F G S R L K A K H L T S W L G S P P L S S S D Q G - R L S . . . . . . 590 TTAGGTAGAGTAAAGGGGATGTCGGGGCTAGTAGGTGCATGGGGGTTTCTGCCACTCTCA L G R V K G M S G L V G A W G F L P L S - V E - R G C R G - - V H G G F C H S H I R - S K G D V G A S R C M G V S A T L . . . . . . 650 CTCACTCACTCACTCTGTTGTCTGTTTGTTCCTGTTCCTCTCTGTTTTCTTCTTGCTCTG L T H S L C C L F V P V P L C F L L A L S L T H S V V C L F L F L S V F F L L C T H S L T L L S V C S C S S L F S S C S . . . . . . 710 TAACCTGGACCTGGTACGAGTCAGCAGCCAGCAGCAAACTCGCGTTTTGCCTGTA - P G P G T S Q Q P A A N S R F A C N L D L V R V S S Q Q Q T R V L P V V T W T W Y E S A A S S K L A F C L Maximal non-overlapping open reading frames (>= 64 codons): >1006166F10YNX+_PGL-1_AGS-1_PPS_1 (97 232,427 593) (frame '2'; 300 bp, 100 residues) 1 ARASCRARKG PVCSRRSAAG RGCARATSSP GWWFPSSSAT SSRALAGRKP RRTGLSSSPP 61 PGPSRDTPSS YGGDRIAMIS DLMARFSPLI FFGSRLKAKH - ... finished at: Mon Nov 10 17:48:43 2003 ________________________________________________________________________________ Sequence 30: 1006169C12YNX, from 1 to 440, both strands analyzed. ... started at: Mon Nov 10 17:48:43 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:44 2003 ________________________________________________________________________________ Sequence 31: 1006170E02YNX, from 1 to 777, both strands analyzed. ... started at: Mon Nov 10 17:48:44 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:44 2003 ________________________________________________________________________________ Sequence 32: 1006170E08YNX, from 1 to 891, both strands analyzed. ... started at: Mon Nov 10 17:48:44 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 440767+) 1 NGCGAGGACG AGGCCGCCCC GCCTCCGAGA TACAGCGGTC GCATCGAGCT CGCGCCAGAG 61 GTTTACAGGA TGGACAAGAT CAAGGCGGAG ATGAAGAACG GCGTGCTCAA GGTGGTCGTG 121 CCGAAGGTGA AGGAGCAGCA GCGCAAGGAC GTGTTCCAAG TCAACGTCGA GTAGATGTTT 181 CCAAATAGAA GCAAGTNCCG GTACGGGATG GAGGATTGGA GGGGCACTGC CAAACTAGGA 241 TTCCTCTCTC TCAATCTGAT CTGGATTCTG GAATCANATT TCTCTTCTTT CATTTTTCTC 301 GTCTATCTTC TATCAGTATG AAATAAGCAA CGTCGGTTCA AGTTTTCG Predicted gene structure (within gDNA segment 891 to 1): Exon 1 617 295 ( 323 n); cDNA 2 316 ( 315 n); score: 0.969 Intron 1 294 213 ( 82 n); Pd: 0.000 (s: 0.96), Pa: 0.962 (s: 0) Exon 2 212 182 ( 31 n); cDNA 317 348 ( 32 n); score: 0.903 MATCH 1006170E08YNX- 440767+ 0.969 354 1.017 C PGS_1006170E08YNX-_440767+ (617 295,212 182) Alignment (genomic DNA sequence = upper lines): GCGAGGACGA GGCCGCCCCG CCTCCGAGAT ACAGCGGTCG CATCGAGCTC GCGCCAGAGG 558 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGAGGACGA GGCCGCCCCG CCTCCGAGAT ACAGCGGTCG CATCGAGCTC GCGCCAGAGG 61 TTTACAGGAT GGACAAGATC AAGGCGGAGA TGAAGAACGG CGTGCTCAAG GTGGTCGTGC 498 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACAGGAT GGACAAGATC AAGGCGGAGA TGAAGAACGG CGTGCTCAAG GTGGTCGTGC 121 CGAAGGTGAA GGAGCAGCAG CGCAAGGACG TGTTCCAAGT CAACGTCGAG TAGATGTTTC 438 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAGGTGAA GGAGCAGCAG CGCAAGGACG TGTTCCAAGT CAACGTCGAG TAGATGTTTC 181 CAAATAGAAG CAAGTGCCGG TACGGGATGG AGGATTGGAG CCTGGAGGGG CACTGCCAAA 378 |||||||||| ||||| |||| |||||||||| |||| | |||||||| |||||||||| CAAATAGAAG CAAGTNCCGG TACGGGATGG AGGA-T---- --TGGAGGGG CACTGCCAAA 234 CTAGGATTCC TCTCTCTCAA TCTGATCTGG ATTCTGGAAT CAGATTTCTC TTCTTTCATT 318 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| CTAGGATTCC TCTCTCTCAA TCTGATCTGG ATTCTGGAAT CANATTTCTC TTCTTTCATT 294 TTTCTCGTCT ATCTTCTATC GAGATANNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 258 |||||||||| |||||||||| || TTTCTCGTCT ATCTTCTATC -AG....... .......... .......... .......... 316 NNNNNNNNNN NNNNNNCATA ATGTCAATTA TCTCTCTTCT ATCAGTATGA AATAAGCAAC 198 ||||| |||||||||| .......... .......... .......... .......... .....TATGA AATAAGCAAC 331 GTCGCTTC-A GTTTTCG 182 |||| ||| | ||||||| GTCGGTTCAA GTTTTCG 348 hqPGS_1006170E08YNX-_440767+ (617 295,212 182) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 891: PGL 1 (- strand): 617 182 AGS-1 (617 295,212 182) SCR (e 0.969 d 0.000 a 0.962,e 0.903) Exon 1 617 295 ( 323 n); score: 0.969 Intron 1 294 213 ( 82 n); Pd: 0.000 Pa: 0.962 Exon 2 212 182 ( 31 n); score: 0.903 PGS (617 295,212 182) 440767+ 3-phase translation of AGS-1 (-strand): . . . . . . 617 GCGAGGACGAGGCCGCCCCGCCTCCGAGATACAGCGGTCGCATCGAGCTCGCGCCAGAGG A R T R P P R L R D T A V A S S S R Q R R G R G R P A S E I Q R S H R A R A R G E D E A A P P P R Y S G R I E L A P E . . . . . . 557 TTTACAGGATGGACAAGATCAAGGCGGAGATGAAGAACGGCGTGCTCAAGGTGGTCGTGC F T G W T R S R R R - R T A C S R W S C L Q D G Q D Q G G D E E R R A Q G G R A V Y R M D K I K A E M K N G V L K V V V . . . . . . 497 CGAAGGTGAAGGAGCAGCAGCGCAAGGACGTGTTCCAAGTCAACGTCGAGTAGATGTTTC R R - R S S S A R T C S K S T S S R C F E G E G A A A Q G R V P S Q R R V D V S P K V K E Q Q R K D V F Q V N V E - M F . . . . . . 437 CAAATAGAAGCAAGTGCCGGTACGGGATGGAGGATTGGAGCCTGGAGGGGCACTGCCAAA Q I E A S A G T G W R I G A W R G T A K K - K Q V P V R D G G L E P G G A L P N P N R S K C R Y G M E D W S L E G H C Q . . . . . . 377 CTAGGATTCCTCTCTCTCAATCTGATCTGGATTCTGGAATCAGATTTCTCTTCTTTCATT L G F L S L N L I W I L E S D F S S F I - D S S L S I - S G F W N Q I S L L S F T R I P L S Q S D L D S G I R F L F F H . . . : . . . 317 TTTCTCGTCTATCTTCTATCGAG : TATGAAATAAGCAACGTCGCTTCAGTTTTCG F L V Y L L S S : M K - A T S L Q F S F S S I F Y R : V - N K Q R R F S F F S R L S S I E : Y E I S N V A S V F Maximal non-overlapping open reading frames (>= 64 codons): >1006170E08YNX-_PGL-1_AGS-1_PPS_1 (488 295,212 203) (frame '1'; 201 bp, 67 residues) 1 RSSSARTCSK STSSRCFQIE ASAGTGWRIG AWRGTAKLGF LSLNLIWILE SDFSSFIFLV 61 YLLSSMK- ... finished at: Mon Nov 10 17:48:45 2003 ________________________________________________________________________________ Sequence 33: 1006173H04YNX, from 1 to 944, both strands analyzed. ... started at: Mon Nov 10 17:48:45 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand (File: 440640-) 1 CTCTTACTCC GGAGAGGCTG ATTGACCTTG ACCGGCGTTG TACGGGTTCT GGAAGTACGT 61 GAGCAACCTG GAGAGGCGCG AGACCCGCCG CTACATCGAG ATGTTCTACG CCCTGAAGTA 121 CCGTAGCCTG GCAAGCCAGG TTCCGCTGTC CTTCGATTAG TACGGGGAAA GAAGAAGAAG 181 AAGAAGCCCA GGCCGGAGAA CCATCGCCTG CATTTCGATC TGTTTCACCG CAATTCGCAT 241 TGTTAGTCGT GTATTGGAGT TATGTGTACT TGGTTTCCAA GAACTTTGGT TCCTTGTTTT 301 TTTTTCTTTC TTGTTTGAGC GTTTTTGGGC AGCGCTGGCC TGGTTCCTAG TATGGTGAGA 361 ATTGGCTGCA CCTTTTGCTT CGAAT Predicted gene structure (within gDNA segment 777 to 1): Exon 1 313 191 ( 123 n); cDNA 5 130 ( 126 n); score: 0.943 Intron 1 190 72 ( 119 n); Pd: 1.000 (s: 1.00), Pa: 0.151 (s: 0.86) Exon 2 71 1 ( 71 n); cDNA 131 195 ( 65 n); score: 0.901 MATCH 1006173H04YNX- 440640- 0.928 194 0.504 C PGS_1006173H04YNX-_440640- (313 191,71 1) Alignment (genomic DNA sequence = upper lines): TACTCCG-AG AGGCTGAT-G ACCCTGACCG GCGT-GTACG GGTTCTGGAA GTACGTGAGC 257 ||||||| || |||||||| | ||| |||||| |||| ||||| |||||||||| |||||||||| TACTCCGGAG AGGCTGATTG ACCTTGACCG GCGTTGTACG GGTTCTGGAA GTACGTGAGC 64 AACCTGGAGA GGCGCGAGAC CCGCCGCTAC ATCGAGATGT TCTACGCCCT GAAGTACCGT 197 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTGGAGA GGCGCGAGAC CCGCCGCTAC ATCGAGATGT TCTACGCCCT GAAGTACCGT 124 AGCCTGGTAA GCCGTTTGAT GCCTGCCTCT GCCTCTGGCT GCCAGAGAGG ATCACGTGTT 137 |||||| AGCCTG.... .......... .......... .......... .......... .......... 130 CGTTCCCATT CTAGCAGGCT TAAACGAGTG GATGAACTAC TGACGCATCT GTTTCTGGAA 77 .......... .......... .......... .......... .......... .......... 130 TCCAGGCAAG CCAGGGTCCG CTGTCCTTCG ATTAGTACGG GGAAAGAAGG AGAAGAAGAA 17 ||||| ||||| |||| |||||||||| |||||||| | || ||| |||||||||| .....GCAAG CCAGGTTCCG CTGTCCTTCG ATTAGTAC-G GG---GAA-- AGAAGAAGAA 179 GAAGAAGCCC AGGCCG 1 |||||||||| |||||| GAAGAAGCCC AGGCCG 195 hqPGS_1006173H04YNX-_440640- (313 191,71 1) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 944: PGL 1 (- strand): 313 1 AGS-1 (313 191,71 1) SCR (e 0.943 d 1.000 a 0.151,e 0.901) Exon 1 313 191 ( 123 n); score: 0.943 Intron 1 190 72 ( 119 n); Pd: 1.000 Pa: 0.151 Exon 2 71 1 ( 71 n); score: 0.901 PGS (313 191,71 1) 440640- 3-phase translation of AGS-1 (-strand): . . . . . . 313 TACTCCGAGAGGCTGATGACCCTGACCGGCGTGTACGGGTTCTGGAAGTACGTGAGCAAC Y S E R L M T L T G V Y G F W K Y V S N T P R G - - P - P A C T G S G S T - A T L R E A D D P D R R V R V L E V R E Q . . . . . . 253 CTGGAGAGGCGCGAGACCCGCCGCTACATCGAGATGTTCTACGCCCTGAAGTACCGTAGC L E R R E T R R Y I E M F Y A L K Y R S W R G A R P A A T S R C S T P - S T V A P G E A R D P P L H R D V L R P E V P - . : . . . . . 193 CTG : GCAAGCCAGGGTCCGCTGTCCTTCGATTAGTACGGGGAAAGAAGGAGAAGAAGAAGA L : A S Q G P L S F D - Y G E R R R R R R W : Q A R V R C P S I S T G K E G E E E E P : G K P G S A V L R L V R G K K E K K K . . 14 AGAAGCCCAGGCCG R S P G E A Q A K K P R P Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:45 2003 ________________________________________________________________________________ Sequence 34: 1006174A01YNX, from 1 to 751, both strands analyzed. ... started at: Mon Nov 10 17:48:45 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:46 2003 ________________________________________________________________________________ Sequence 35: 1006175E10YNX, from 1 to 577, both strands analyzed. ... started at: Mon Nov 10 17:48:46 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:46 2003 ________________________________________________________________________________ Sequence 36: 1006177B07YNX, from 1 to 326, both strands analyzed. ... started at: Mon Nov 10 17:48:46 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 1 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand (File: 7217071-) 1 GGCTAGAACT TTGGAGATGA ATAATGTCCA GTGTGGTGTC TGGCATGGCC GAGGTGATTC 61 CATTTGTTTA GGGAGCANCG GTGCAGGAAC CAAGGCTTTC GCTGCCCTGA ACAAGGCCTC 121 TCTCGTGCCT ATAAAGTCCC CGGGGATGTG TGGCATGGAT AGATCGTCAA GCGCAGCCGA 181 CGAGCAGCAG CCGCTTGTCC CACCGGACCA ACTGGAGCAG GTTTAGGTAT TCTCTGTCGC 241 CACGACCTCT GCACTTTCCT AGAAGGGCTT GGACAGCGCC GACGGAAAAA AAATCGTTCT 301 CTGCCGGATT ATTAGGCGCC TGCATCCATT GGTCCCGAAA ACTGGACTTT GCAACTACCG 361 TACATGGGTG ATGGGCGCAG TCGACCTGCT GCTGCTGCTG TTGTAAAACT CAGTGATAGA 421 TTTTCACGTG CAGTCGAATT GTTTAGGTCG AAGACTGTAT CTTCAGAATG TCCC Predicted gene structure (within gDNA segment 326 to 1): Exon 1 323 157 ( 167 n); cDNA 279 433 ( 155 n); score: 0.892 Intron 1 156 89 ( 68 n); Pd: 0.000 (s: 0.90), Pa: 0.919 (s: 0) Exon 2 88 51 ( 38 n); cDNA 434 472 ( 39 n); score: 0.921 MATCH 1006177B07YNX- 7217071- 0.892 205 0.629 G PGS_1006177B07YNX-_7217071- (323 157,88 51) Alignment (genomic DNA sequence = upper lines): CCGACGGAGA AAAAAAATCG TCCTCTGCCG GATTATTAGG CGCCTGCATC TGCATCCATT 264 ||||| | || |||||||||| | |||||||| |||||||||| |||||||||| ||| | CCGAC-G-GA AAAAAAATCG TTCTCTGCCG GATTATTAGG CGCCTGCATC --CAT---T- 330 GGTCCCGAGA ACTGGACTTT GCAGCTACCG TACATGGGTG ATGGGCGCAG TCGACCTGCT 204 |||||||| | |||||||||| ||| |||||| |||||||||| |||||||||| |||| | || GGTCCCGAAA ACTGGACTTT GCAACTACCG TACATGGGTG ATGGGCGCAG TCGA-C--CT 387 GCTGGCTGCT GCTGTTGTAA AATTCAGTGA TAGATTTTCT CTTGCAGTCN NNNNNNNNNN 144 ||| |||||| |||||||||| || ||||||| ||||||||| | ||||| GCT-GCTGCT GCTGTTGTAA AACTCAGTGA TAGATTTTCA CGTGCAG... .......... 433 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNA ATCATCTCCT TGCAGTCGAA 84 ||||| .......... .......... .......... .......... .......... .....TCGAA 438 -TGTTTAGGT CGAAGACTGT ATCTTCATAA TGTC 51 ||||||||| |||||||||| ||||||| || |||| TTGTTTAGGT CGAAGACTGT ATCTTCAGAA TGTC 472 hqPGS_1006177B07YNX-_7217071- (323 157,88 51) ******************************************************************************** EST sequence 2 +strand (File: 7217072+) 1 TGGACGATTG TGTTCTCCAT CTCATATGTC CTTGCTGTAC GCTGTGCCAG GAGGCTAGAA 61 CTTTGGAGAT GAATAATGTC CAGTGTGGTG TCTGGCATGG CCGAGGTGAT ACCATTTGTT 121 TAGGGAGCAA CGGTGCAGGA AACAAGGCTT TCGCTGCCCT GAACAAGGCC TCTCTCGTGC 181 CTATAAAGTC CCCGGGGATG TGTGGCATGG ATAGATCGTC AAGCGCAGCC GACGAGCAGC 241 AGCCGCTTGT CCCACCGGAC CAACTGGAGC AGGTTTAGGT ATTCTCTGTC GCCACGACCT 301 CTGCACTTTC CTAGAAGGGC TTGGACAGCG CCGACGGAAA AAAAATCGTT CTCTGCCGGA 361 TTATTAGGCG CCTGCATCCA TTGGTCCCGA GAACTGGACT TTGCAACTAC CGTACATGGG 421 TGATGGGCGC AGTCGACCTG CTGCTGCTGC TGTTGTAAAA CTCAGTGATA GATTTTCACG 481 TGCAGTCGAA TTGT Predicted gene structure (within gDNA segment 326 to 1): Exon 1 323 155 ( 169 n); cDNA 331 487 ( 157 n); score: 0.899 MATCH 1006177B07YNX- 7217072+ 0.899 169 0.518 G PGS_1006177B07YNX-_7217072+ (323 155) Alignment (genomic DNA sequence = upper lines): CCGACGGAGA AAAAAAATCG TCCTCTGCCG GATTATTAGG CGCCTGCATC TGCATCCATT 264 ||||| | || |||||||||| | |||||||| |||||||||| |||||||||| ||| | CCGAC-G-GA AAAAAAATCG TTCTCTGCCG GATTATTAGG CGCCTGCATC --CAT---T- 382 GGTCCCGAGA ACTGGACTTT GCAGCTACCG TACATGGGTG ATGGGCGCAG TCGACCTGCT 204 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||| | || GGTCCCGAGA ACTGGACTTT GCAACTACCG TACATGGGTG ATGGGCGCAG TCGA-C--CT 439 GCTGGCTGCT GCTGTTGTAA AATTCAGTGA TAGATTTTCT CTTGCAGTC 155 ||| |||||| |||||||||| || ||||||| ||||||||| | ||||||| GCT-GCTGCT GCTGTTGTAA AACTCAGTGA TAGATTTTCA CGTGCAGTC 487 hqPGS_1006177B07YNX-_7217072+ (323 155) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 326: PGL 1 (- strand): 323 51 AGS-1 (323 157,88 51) SCR (e 0.899 d 0.000 a 0.919,e 0.921) Exon 1 323 157 ( 167 n); score: 0.899 Intron 1 156 89 ( 68 n); Pd: 0.000 Pa: 0.919 Exon 2 88 51 ( 38 n); score: 0.921 PGS (323 157,88 51) 7217071- PGS (323 155) 7217072+ 3-phase translation of AGS-1 (-strand): . . . . . . 323 CCGACGGAGAAAAAAAATCGTCCTCTGCCGGATTATTAGGCGCCTGCATCTGCATCCATT P T E K K N R P L P D Y - A P A S A S I R R R K K I V L C R I I R R L H L H P L D G E K K S S S A G L L G A C I C I H . . . . . . 263 GGTCCCGAGAACTGGACTTTGCAGCTACCGTACATGGGTGATGGGCGCAGTCGACCTGCT G P E N W T L Q L P Y M G D G R S R P A V P R T G L C S Y R T W V M G A V D L L W S R E L D F A A T V H G - W A Q S T C . . . . . : . 203 GCTGGCTGCTGCTGTTGTAAAATTCAGTGATAGATTTTCTCTTGCAG : TCGAATGTTTAGG A G C C C C K I Q - - I F S C S : R M F R L A A A V V K F S D R F S L A : V E C L G C W L L L L - N S V I D F L L Q : S N V - . . . 75 TCGAAGACTGTATCTTCATAATGTC S K T V S S - C R R L Y L H N V V E D C I F I M Maximal non-overlapping open reading frames (>= 64 codons): >1006177B07YNX-_PGL-1_AGS-1_PPS_1 (322 157,88 51) (frame '2'; 204 bp, 68 residues) 1 RRRKKIVLCR IIRRLHLHPL VPRTGLCSYR TWVMGAVDLL LAAAVVKFSD RFSLAVECLG 61 RRLYLHNV ... finished at: Mon Nov 10 17:48:46 2003 ________________________________________________________________________________ Sequence 37: 1006179A05YNX, from 1 to 573, both strands analyzed. ... started at: Mon Nov 10 17:48:46 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand (File: 1546844+) 1 GGACAGGCAG GCAGCGAGTG CAACNNNGNN NNNTCANNNN TGGGCTCCTT CTTCTCGACC 61 TTAGTGACGC CCCCTCCGGC CGCCGACGAC CCGAACTGCG CCGTGGTGGC CGCGCACTCC 121 AAGGCCACTA CGACGAGCAG TGGGCGCCCA CAAGAGCAGC AGCAAGCTGA TGGTGATCGA 181 CTTCTCGGCG TCCTGGTGCG GGCCCTGCNT TCATCGAGCC GGCCTTCAAG GANCTGGCCT 241 CCCGCTTCAC CGATGCCATC TTCGTCAAGG TTGACGTCGA CGAGCT Predicted gene structure (within gDNA segment 573 to 1): Exon 1 228 67 ( 162 n); cDNA 10 169 ( 160 n); score: 0.858 MATCH 1006179A05YNX- 1546844+ 0.858 162 0.566 C PGS_1006179A05YNX-_1546844+ (228 67) Alignment (genomic DNA sequence = upper lines): GGAAGGGAGG GCAACCGAGA GCGATCGGCG ATGGGCTCCT TCCTCTCGAG CTTAGTCACG 169 || || ||| ||||| | || ||||||||| || |||||| |||||| ||| GGCAGCGAGT GCAACNNNGN NNNNTCANNN NTGGGCTCCT TCTTCTCGAC CTTAGTGACG 69 CCCCCTCCGG CCGCCGACGA CCCCAACTGC GCCGTGGTGG CCGCCCACTC CAAGGCCACC 109 |||||||||| |||||||||| ||| |||||| |||||||||| |||| ||||| |||||||| | CCCCCTCCGG CCGCCGACGA CCCGAACTGC GCCGTGGTGG CCGCGCACTC CAAGGCCA-C 128 TACGACGAGC AGTGGGCGGC CCACAAGAGC AGCAGCAAGC TG 67 |||||||||| ||||||| || |||||||||| |||||||||| || TACGACGAGC AGTGGGC-GC CCACAAGAGC AGCAGCAAGC TG 169 hqPGS_1006179A05YNX-_1546844+ (228 67) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 573: PGL 1 (- strand): 228 67 AGS-1 (228 67) SCR (e 0.858) Exon 1 228 67 ( 162 n); score: 0.858 PGS (228 67) 1546844+ 3-phase translation of AGS-1 (-strand): . . . . . . 228 GGAAGGGAGGGCAACCGAGAGCGATCGGCGATGGGCTCCTTCCTCTCGAGCTTAGTCACG G R E G N R E R S A M G S F L S S L V T E G R A T E S D R R W A P S S R A - S R K G G Q P R A I G D G L L P L E L S H . . . . . . 168 CCCCCTCCGGCCGCCGACGACCCCAACTGCGCCGTGGTGGCCGCCCACTCCAAGGCCACC P P P A A D D P N C A V V A A H S K A T P L R P P T T P T A P W W P P T P R P P A P S G R R R P Q L R R G G R P L Q G H . . . . . 108 TACGACGAGCAGTGGGCGGCCCACAAGAGCAGCAGCAAGCTG Y D E Q W A A H K S S S K L T T S S G R P T R A A A S L R R A V G G P Q E Q Q Q A Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 67 CAGCTTGCTGCTGCTCTTGTGGGCCGCCCACTGCTCGTCGTAGGTGGCCTTGGAGTGGGC Q L A A A L V G R P L L V V G G L G V G S L L L L L W A A H C S S - V A L E W A A C C C S C G P P T A R R R W P W S G . . . . . . 127 GGCCACCACGGCGCAGTTGGGGTCGTCGGCGGCCGGAGGGGGCGTGACTAAGCTCGAGAG G H H G A V G V V G G R R G R D - A R E A T T A Q L G S S A A G G G V T K L E R R P P R R S W G R R R P E G A - L S S R . . . . . 187 GAAGGAGCCCATCGCCGATCGCTCTCGGTTGCCCTCCCTTCC E G A H R R S L S V A L P S K E P I A D R S R L P S L G R S P S P I A L G C P P F Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:47 2003 ________________________________________________________________________________ Sequence 38: 1007003F01YNX, from 1 to 680, both strands analyzed. ... started at: Mon Nov 10 17:48:47 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:47 2003 ________________________________________________________________________________ Sequence 39: 1007013D10YNX, from 1 to 804, both strands analyzed. ... started at: Mon Nov 10 17:48:47 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 1 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand (File: 12971836+) 1 CGCTCCGTGT GGCTCATGAA GTGCCCCCCG GTCGTCTCCC GCGCCTGGCA GGCCTGCCTC 61 CGCCTCCGCC TCTTCCTCCG ACGCCGCTAA CGCCAACCCC GTTGTCGCCA AGGTCGTCCT 121 TTCCCTCGAC CTGCTCCGCC CAGAAGAACG CCCCGAAGAG CGCCCGGAAG A Predicted gene structure (within gDNA segment 311 to 804): Exon 1 611 780 ( 170 n); cDNA 1 171 ( 171 n); score: 0.941 MATCH 1007013D10YNX+ 12971836+ 0.941 170 0.994 C PGS_1007013D10YNX+_12971836+ (611 780) Alignment (genomic DNA sequence = upper lines): CGCTCCGTGT GGCTCATGAA GTGCCCCCCG GTCGTCTCCC GCGCCTGGCA GGCC-GCCTC 669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| CGCTCCGTGT GGCTCATGAA GTGCCCCCCG GTCGTCTCCC GCGCCTGGCA GGCCTGCCTC 60 CGCCTCCGCC TCTTCCTCCG ACGCATCTCA CGCACGCGAC GTTGTCGCCA AGGTCGTCCT 729 |||||||||| |||||||||| |||| || | ||| | | |||||||||| |||||||||| CGCCTCCGCC TCTTCCTCCG ACGCCGCTAA CGCCAACCCC GTTGTCGCCA AGGTCGTCCT 120 TTCCCTCGAC CTGCTCCGCC CAGAAGAACG CCCCGAAGAG CGCCCGGAAG A 780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TTCCCTCGAC CTGCTCCGCC CAGAAGAACG CCCCGAAGAG CGCCCGGAAG A 171 hqPGS_1007013D10YNX+_12971836+ (611 780) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 804: PGL 1 (+ strand): 611 780 AGS-1 (611 780) SCR (e 0.941) Exon 1 611 780 ( 170 n); score: 0.941 PGS (611 780) 12971836+ 3-phase translation of AGS-1 (+strand): . . . . . . 611 CGCTCCGTGTGGCTCATGAAGTGCCCCCCGGTCGTCTCCCGCGCCTGGCAGGCCGCCTCC R S V W L M K C P P V V S R A W Q A A S A P C G S - S A P R S S P A P G R P P P L R V A H E V P P G R L P R L A G R L . . . . . . 671 GCCTCCGCCTCTTCCTCCGACGCATCTCACGCACGCGACGTTGTCGCCAAGGTCGTCCTT A S A S S S D A S H A R D V V A K V V L P P P L P P T H L T H A T L S P R S S F R L R L F L R R I S R T R R C R Q G R P . . . . . 731 TCCCTCGACCTGCTCCGCCCAGAAGAACGCCCCGAAGAGCGCCCGGAAGA S L D L L R P E E R P E E R P E P S T C S A Q K N A P K S A R K F P R P A P P R R T P R R A P G R Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 780 TCTTCCGGGCGCTCTTCGGGGCGTTCTTCTGGGCGGAGCAGGTCGAGGGAAAGGACGACC S S G R S S G R S S G R S R S R E R T T L P G A L R G V L L G G A G R G K G R P F R A L F G A F F W A E Q V E G K D D . . . . . . 720 TTGGCGACAACGTCGCGTGCGTGAGATGCGTCGGAGGAAGAGGCGGAGGCGGAGGCGGCC L A T T S R A - D A S E E E A E A E A A W R Q R R V R E M R R R K R R R R R R P L G D N V A C V R C V G G R G G G G G G . . . . . 660 TGCCAGGCGCGGGAGACGACCGGGGGGCACTTCATGAGCCACACGGAGCG C Q A R E T T G G H F M S H T E A R R G R R P G G T S - A T R S L P G A G D D R G A L H E P H G A Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Nov 10 17:48:47 2003 ________________________________________________________________________________ Sequence 40: 1007021B01YNX, from 1 to 678, both strands analyzed. ... started at: Mon Nov 10 17:48:47 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:47 2003 ________________________________________________________________________________ Sequence 41: 1007033B07YNX, from 1 to 1102, both strands analyzed. ... started at: Mon Nov 10 17:48:47 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Nov 10 17:48:47 2003 ________________________________________________________________________________ Sequence 42: 1007034D07YNX, from 1 to 609, both strands analyzed. ... started at: Mon Nov 10 17:48:47 2003 EST library file: all_mappedEST.fsa; matching gDNA +strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 EST library file: all_mappedEST.fsa; matching gDNA -strand ... ... found all matches, elapsed seconds = 0 ... matches indexed, elapsed seconds = 0 HitsTableSize = 0 No significant EST matches were found. ... finishe